| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-02-06 11:39 -0500 (Thu, 06 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4719 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4480 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4491 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4444 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 64/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ANCOMBC 2.9.1 (landing page) Huang Lin
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the ANCOMBC package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ANCOMBC.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ANCOMBC |
| Version: 2.9.1 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ANCOMBC |
| StartedAt: 2025-02-05 16:07:34 -0500 (Wed, 05 Feb 2025) |
| EndedAt: 2025-02-05 16:16:03 -0500 (Wed, 05 Feb 2025) |
| EllapsedTime: 509.6 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ANCOMBC ### ############################################################################## ############################################################################## * checking for file ‘ANCOMBC/DESCRIPTION’ ... OK * preparing ‘ANCOMBC’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: ANCOMBC * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘ANCOM.Rmd’ using rmarkdown --- finished re-building ‘ANCOM.Rmd’ --- re-building ‘ANCOMBC.Rmd’ using rmarkdown --- finished re-building ‘ANCOMBC.Rmd’ --- re-building ‘ANCOMBC2.Rmd’ using rmarkdown --- finished re-building ‘ANCOMBC2.Rmd’ --- re-building ‘SECOM.Rmd’ using rmarkdown --- finished re-building ‘SECOM.Rmd’ --- re-building ‘data_sanity_check.Rmd’ using rmarkdown Quitting from lines 115-123 [unnamed-chunk-9] (data_sanity_check.Rmd) Error: processing vignette 'data_sanity_check.Rmd' failed with diagnostics: 'block' is not a recognized matrix representation --- failed re-building ‘data_sanity_check.Rmd’ SUMMARY: processing the following file failed: ‘data_sanity_check.Rmd’ Error: Vignette re-building failed. Execution halted