Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-17 11:39 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1058/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IPO 1.33.0 (landing page) Thomas Lieb
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | |||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the IPO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IPO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: IPO |
Version: 1.33.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data IPO |
StartedAt: 2025-03-16 17:19:15 -0400 (Sun, 16 Mar 2025) |
EndedAt: 2025-03-16 17:20:36 -0400 (Sun, 16 Mar 2025) |
EllapsedTime: 81.1 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data IPO ### ############################################################################## ############################################################################## * checking for file ‘IPO/DESCRIPTION’ ... OK * preparing ‘IPO’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘IPO.Rmd’ using rmarkdown 2025-03-16 17:20:33.822 R[37719:416094231] XType: com.apple.fonts is not accessible. 2025-03-16 17:20:33.823 R[37719:416094231] XType: XTFontStaticRegistry is enabled. Quitting from IPO.Rmd:118-134 [optimize_peak_picking] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `dev.off()`: ! QuartzBitmap_Output - unable to open file '/tmp/Rtmp6X89Zh/file93571b07c896' --- Backtrace: ▆ 1. └─tools::buildVignettes(dir = ".", tangle = TRUE) 2. ├─base::tryCatch(...) 3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 6. └─engine$weave(file, quiet = quiet, encoding = enc) 7. └─knitr:::vweave_rmarkdown(...) 8. └─rmarkdown::render(...) 9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 10. └─knitr:::process_file(text, output) 11. ├─xfun:::handle_error(...) 12. ├─base::withCallingHandlers(...) 13. └─knitr:::process_group(group) 14. └─knitr:::call_block(x) 15. └─knitr:::block_exec(params) 16. └─knitr:::eng_r(options) 17. └─grDevices::dev.off(dv) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'IPO.Rmd' failed with diagnostics: QuartzBitmap_Output - unable to open file '/tmp/Rtmp6X89Zh/file93571b07c896' --- failed re-building ‘IPO.Rmd’ SUMMARY: processing the following file failed: ‘IPO.Rmd’ Error: Vignette re-building failed. Execution halted