Mustafa Erhan Ozer
| Snapshot Date: 2025-02-04 13:40 -0500 (Tue, 04 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-05 11:40 -0500 (Wed, 05 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4717 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4478 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4489 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4442 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2100/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-02-05 03:19:56 -0500 (Wed, 05 Feb 2025) |
| EndedAt: 2025-02-05 03:25:44 -0500 (Wed, 05 Feb 2025) |
| EllapsedTime: 348.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 57505,51608,811,4299,51167,81704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22901,1737,5499,64801,9498,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 156,5744,6649,83884,285126,1339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3308,10682,266,1909,2835,3709
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,5306,1605,1444,5092,4149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1027,7919,8678,490,5370,2693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2643,10537,4543,8243,83985,8642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 513,7412,9479,5571,100128525,3958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,3645,51649,929,51608,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2702,1543,84447,2729,55753,427
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2720,5291,654,2590,54931,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5571,7941,79087,2946,23369,3759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5919,359,60684,5580,5160,11131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 126328,1435,2786,3645,2647,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1557,80270,83985,5264,11132,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1629,26191,6649,3954,7077,540
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 498,9969,153,655,6387,22852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4338,8567,5261,4144,54968,149775
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,6999,8195,2949,2334,3710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11232,57380,7025,8818,201595,91452
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,130120,217,3570,79001,10229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,8803,256471,9370,1645,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5176,5617,53905,2109,28976,2919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4502,8694,7056,23291,132,4683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57085,4069,2720,5581,7297,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56922,8604,6383,2937,7352,7407
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1559,6794,1956,7919,54658,338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2548,1508,91869,629,2904,1442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2934,6445,627,28951,9479,1605
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 125170,10642,8517,27010,10116,155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55503,952,1593,23163,8560,54539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3938,1893,5617,5346,23417,6391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23304,8714,4716,3283,3645,2731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79944,406982,3651,3060,5071,471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2805,120227,51738,5295,2689,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6834,79133,57511,2348,493,2395
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,19,2720,4697,2591,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,348,445,6928,3708,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,10938,26521,9927,374291,7320
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2908,292,29881,718,51117,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7157,4656,4149,9559,340024,506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10250,10102,10229,9180,10560,2166
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,10891,3645,4126,2875,958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,6536,57620,51167,4118,51099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2642,3636,5901,181,376497,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8665,9607,5730,5727,3440,435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2642,145264,7284,3949,26291,9779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6009,8932,4790,3375,48,3953
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,3098,64919,383,6550,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2990,1352,1769,2590,2314,5276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1394,652,81689,5406,4282,4159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10165,11132,2934,3685,160287,51116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84947,79587,5274,2740,29929,2762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3586,583,5054,3440,3717,241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7428,4548,3795,9414,656,100131801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,3638,1208,7287,4232,3767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5744,29078,1649,10616,52,11232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80224,8560,1347,4285,3636,10383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,9512,80222,26517,10938,434
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 126328,32,6324,6383,4790,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26060,3813,91949,4524,83693,5538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123,5286,54575,2639,729230,388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407011,5207,7052,316,1910,1149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2690,7052,11255,6517,6584,1374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1270,84833,53346,5798,23038,4860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1356,1594,2798,55163,55331,4722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 122961,6696,10577,2591,1524,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5160,9927,64801,2629,1489,1588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7099,4544,51458,3953,793,64801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4282,217,79602,79087,440503,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406934,84061,7376,104,56922,255231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5860,7407,55750,8722,653,56302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,2702,1346,4233,353500,57817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1356,80339,790955,1371,1601,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55753,55863,5350,2790,2582,10842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10116,125988,391051,54576,9445,111240474
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,4683,2638,3425,3663,2760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51649,7292,405,2937,10599,51081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 31,3091,178,487,3117,131118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 685,3482,51422,10135,7879,64131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8660,5836,4860,7132,9377,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 768239,1621,3033,487,51024,54600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1544,84557,3065,123,53905,183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 410,85365,4313,374291,3709,4311
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 718,391051,440138,9377,90624,3624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,4049,55278,2990,5190,7297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6319,64432,2937,3383,6183,9382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 308,3551,2184,1185,91574,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,4314,56923,706,54578,2146
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6834,2712,6901,104,3357,85569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,22901,4716,3485,445,6382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6579,6319,37,57048,1509,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,51555,80070,5257,361,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 384,1374,200539,2646,51316,5967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64432,80347,959,51119,55768,6354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 359,5970,64801,6531,1588,54600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10157,9779,842,1185,388372,2590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57176,56623,27232,156,2055,10229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3569,51206,3382,79644,80222,6834
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4683,292,60684,3060,1356,90624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,1524,8567,353500,9180,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8942,23556,4887,2984,4702,200186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5068,795,4547,6891,199,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,6897,3948,5507,406922,6198
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5313,3170,374291,942,7941,1608
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2184,1374,2101,7350,6576,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56919,293,2100,5321,10352,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2034,55630,10875,7056,26119,80339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,5601,7084,7347,7942,2108
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,7040,4709,6898,9054,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27235,3553,7026,388585,10013,9374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5091,5277,2247,23369,2113,6715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2908,84317,5330,5660,477,10165
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150379,57001,1346,10841,7480,367
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 652,8651,23410,10682,2786,152926
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
115.314 1.238 116.664
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.719 | 0.080 | 3.811 | |