Mustafa Erhan Ozer
| Snapshot Date: 2025-02-04 13:40 -0500 (Tue, 04 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-05 11:41 -0500 (Wed, 05 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4717 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4478 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4489 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4442 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2100/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-02-05 06:25:39 -0500 (Wed, 05 Feb 2025) |
| EndedAt: 2025-02-05 06:31:19 -0500 (Wed, 05 Feb 2025) |
| EllapsedTime: 340.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.7.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 56606,79736,335,308,10559,2588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5264,3692,2200,24147,23556,3373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 153,2524,5191,599,3667,7025
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,115286,3309,26088,389,3416
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,2878,842,2303,1508,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5078,6906,599,84902,868,9370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284958,389692,11255,100130015,3423,185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1581,5230,5409,51649,51052,1200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10667,51085,567,26517,3062,65985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 275,87178,4722,56997,4125,4118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,6536,79731,148979,5617,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3309,4128,2539,338821,140803,3098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5214,10166,407007,6338,50943,364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3483,101180976,3990,3291,64801,199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23474,10250,28234,65985,3308,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 189,3101,1588,824,5367,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79633,4547,84061,5019,819,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6718,11136,3077,5590,100303755,8473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 959,3074,3953,56259,54896,517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3440,2984,7099,23369,5327,268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2487,4143,3586,170302,6329,51024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 513,10643,5442,256471,10667,1801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,5191,1559,90624,3308,6584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25915,3113,142,23410,51021,3638
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7345,5078,340024,81570,9698,52
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6833,10166,6566,54915,6579,4852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,79087,3717,4160,3795,4842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7172,2538,151306,790955,229,3988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1339,22978,2641,1594,836,539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,3351,540,3156,219,3486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4719,4547,7352,6696,1649,2677
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5465,6569,2693,1644,5562,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2628,53905,2984,51144,54915,5562
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26521,51660,52,132158,10295,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1369,54902,57818,7297,1232,2200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6602,3759,3600,5291,2847,563
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5321,64116,6715,350,407021,123099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,718,6183,30061,1646,7352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,383,308,388753,23411,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10165,407010,10128,80347,463,858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4040,2495,406934,5092,90865,81704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4790,2932,406937,3099,22797,132001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 999,3240,1393,2243,152078,7319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63892,2688,4842,5506,3356,4015
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5581,6261,952,2516,1968,1588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,80201,9365,836,63874,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 351,7054,5327,239,2305,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54552,51004,43,1544,10999,80331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4144,338,627,9607,25828,6550
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28234,6833,2495,5507,1200,54658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1718,6382,54805,5175,2760,55572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3773,406913,64240,5365,5562,50507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2305,79144,158,655,2572,84317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3920,3507,3483,8504,11231,55967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6341,53346,8659,6821,116085,84833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3779,80331,4886,6794,5328,8678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84300,100131801,4704,4846,7292,7355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 325,3123,2787,477,5228,1906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 563,4544,3486,5590,10842,5365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,5538,54896,6535,590,55753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,1028,64240,125988,2694,84987
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406906,2947,55863,2030,5644,9698
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1769,51204,100130015,7167,1514,51176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,5373,9698,10352,585,3460
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3562,5370,1606,5599,10250,1678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1361,34,356,51167,197322,5590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25839,166785,133396,6616,84889,284958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4358,6439,9451,1524,79644,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8642,1893,7295,85365,57001,51117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 581,22820,2778,29078,4683,2118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8195,170302,87178,79783,54106,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8932,292,2729,9370,341,54549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7841,2878,91949,6648,594,6445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2713,2271,203859,55283,5860,3773
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 213,345,10842,6891,6391,63874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10616,38,655,6715,116150,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2203,3329,488,64240,7325,4695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132001,8195,410,1491,2395,10166
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29960,353,6261,7480,51316,942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57380,81704,4728,111,3062,2524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,83985,64432,4040,51204,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6569,285848,2030,55768,7295,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2694,2100,8772,11232,1815,55858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60684,23163,8202,1072,2591,55818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1815,6649,5369,1558,32,653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2053,26119,54658,3486,83439,4724
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10643,867,6948,18,3685,6548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2673,1589,2952,6439,694,1728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7879,10559,100,1717,10577,133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6403,2713,6356,8932,4035,2310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,2788,5228,26060,7424,4976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2582,8243,7381,51128,440138,9332
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10229,1200,83884,4118,6721,4351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283459,1443,4758,432369,5370,55283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,15,2643,5465,2524,4143
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84340,256471,4842,7054,5476,79783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79144,6248,54552,51103,55024,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11136,80222,9560,55065,779,23590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55526,5139,4697,51092,55340,100506742
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85446,6319,90480,640,3685,148738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55768,100,4144,411,1843,1586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27141,4712,51181,1374,1200,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,3600,7386,1675,9054,51316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2200,63874,81033,55343,5447,5837
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,9091,9559,7320,5373,9241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11132,7941,4089,2645,10599,7252
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6354,63892,3158,216,3767,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4118,388743,4851,5367,11213,2056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6720,4282,1373,2593,5255,3663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11213,55163,51128,265,27247,551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2694,285848,7385,5445,3060,7471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3113,2778,3791,4160,51660,2247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64919,160428,6696,1555,48,7386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55967,367,2334,9429,5276,6351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,203,387,1392,2100,2056
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
69.71 1.85 73.25
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.67 | 0.07 | 1.34 | |