Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4716
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4478
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4489
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4442
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on palomino7

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-02-03 23:33:36 -0500 (Mon, 03 Feb 2025)

EndedAt: 2025-02-03 23:35:08 -0500 (Mon, 03 Feb 2025)

EllapsedTime: 92.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** this is package 'biodbHmdb' version '1.13.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-02-03 23:34:25.230][biodb::testContext]
biodb.INFO [2025-02-03 23:34:25.233][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:34:25.235][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-02-03 23:34:25.236][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:34:25.237][biodb::testContext]
biodb.INFO [2025-02-03 23:34:25.239][biodb::testThat]
biodb.INFO [2025-02-03 23:34:25.240][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-02-03 23:34:25.241][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:25.242][biodb::testThat]
biodb.INFO [2025-02-03 23:34:25.450][biodb::testContext]
biodb.INFO [2025-02-03 23:34:25.451][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:34:25.452][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-02-03 23:34:25.453][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:34:25.454][biodb::testContext]
biodb.INFO [2025-02-03 23:34:25.464][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-03 23:34:25.467][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-03 23:34:25.475][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:34:25.476][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-03 23:34:25.477][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-03 23:34:25.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.482][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-03 23:34:25.505][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-03 23:34:25.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.510][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-03 23:34:25.511][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-03 23:34:25.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.515][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-03 23:34:25.517][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-03 23:34:25.518][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-03 23:34:25.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.522][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-03 23:34:25.523][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-03 23:34:25.525][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-03 23:34:25.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.529][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-03 23:34:25.530][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-03 23:34:25.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.535][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-03 23:34:25.536][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-03 23:34:25.537][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-03 23:34:25.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.541][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-03 23:34:25.543][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-03 23:34:25.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.547][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-03 23:34:25.548][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-03 23:34:25.550][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-03 23:34:25.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.554][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-03 23:34:25.555][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-03 23:34:25.556][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-03 23:34:25.557][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-03 23:34:25.559][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-03 23:34:25.560][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-03 23:34:25.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.564][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-03 23:34:25.565][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-03 23:34:25.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.570][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-03 23:34:25.571][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-03 23:34:25.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.575][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-03 23:34:25.577][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-03 23:34:25.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.581][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-03 23:34:25.582][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-03 23:34:25.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.587][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-03 23:34:25.588][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-03 23:34:25.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.592][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-03 23:34:25.593][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-03 23:34:25.597][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-03 23:34:25.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.601][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-03 23:34:25.603][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-03 23:34:25.604][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-03 23:34:25.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.611][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-03 23:34:25.639][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.652][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-03 23:34:25.654][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.655][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:25.656][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.658][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.659][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.660][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.661][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-03 23:34:25.663][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:25.664][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.665][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-03 23:34:25.666][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:25.667][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.669][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.670][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:34:25.670][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-03 23:34:25.670][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-03 23:34:25.670][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-03 23:34:25.670][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-03 23:34:25.671][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:25.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.674][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:25.676][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.677][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.678][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.679][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.680][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:25.681][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:25.682][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.684][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.685][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-03 23:34:25.687][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.688][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-03 23:34:25.689][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.691][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:25.692][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.699][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.700][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.702][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-03 23:34:25.703][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:25.705][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.706][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-03 23:34:25.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:25.708][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.709][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.710][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:34:25.710][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-03 23:34:25.710][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-03 23:34:25.710][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-03 23:34:25.710][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-03 23:34:25.712][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:25.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.715][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:25.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.718][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.720][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.721][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:25.722][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:25.723][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.724][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.726][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-03 23:34:25.728][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.729][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-03 23:34:25.730][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.731][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:25.732][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.734][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.735][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.736][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.737][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-03 23:34:25.738][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:25.740][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.741][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-03 23:34:25.742][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:25.743][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.745][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.746][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.747][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:25.748][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.749][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.750][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:25.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.754][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.755][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.756][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:25.757][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:25.758][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.760][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.761][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-03 23:34:25.763][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.764][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-03 23:34:25.765][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.766][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:25.768][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.769][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.770][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.771][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.772][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-03 23:34:25.773][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:25.775][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.776][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-03 23:34:25.777][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:25.778][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.779][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:25.781][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.782][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:25.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.785][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:25.787][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:25.788][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:25.790][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:25.792][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.793][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:25.795][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:25.797][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:25.798][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:25.803][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:34:25.805][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:25.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:25.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:25.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:25.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:25.902][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-03 23:34:25.906][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-03 23:34:25.908][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-03 23:34:25.909][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-03 23:34:25.911][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-03 23:34:25.913][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-03 23:34:25.914][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-03 23:34:25.916][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-03 23:34:25.947][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-03 23:34:25.948][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-03 23:34:25.950][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-03 23:34:25.952][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-03 23:34:25.953][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-03 23:34:25.955][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-03 23:34:25.956][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-03 23:34:25.958][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-03 23:34:25.959][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-03 23:34:25.961][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-03 23:34:25.962][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-03 23:34:25.964][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-03 23:34:25.965][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-03 23:34:25.967][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-03 23:34:25.968][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-03 23:34:25.970][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-03 23:34:25.971][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-03 23:34:25.973][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-03 23:34:25.975][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-03 23:34:25.976][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-03 23:34:25.978][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-03 23:34:25.979][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-03 23:34:25.981][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-03 23:34:25.982][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-03 23:34:25.984][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-03 23:34:25.986][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-03 23:34:25.987][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-03 23:34:25.989][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-03 23:34:25.990][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-03 23:34:25.992][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-03 23:34:25.993][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-03 23:34:25.995][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-03 23:34:25.996][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-03 23:34:25.998][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-03 23:34:26.000][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-03 23:34:26.001][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-03 23:34:26.003][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-03 23:34:26.004][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-03 23:34:26.006][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-03 23:34:26.007][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-03 23:34:26.009][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-03 23:34:26.010][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-03 23:34:26.012][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-03 23:34:26.013][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-03 23:34:26.015][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-03 23:34:26.017][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-03 23:34:26.018][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-03 23:34:26.020][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-03 23:34:26.021][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-03 23:34:26.023][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-03 23:34:26.024][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-03 23:34:26.026][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-03 23:34:26.027][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-03 23:34:26.029][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-03 23:34:26.030][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-03 23:34:26.032][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-03 23:34:26.034][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-03 23:34:26.035][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-03 23:34:26.037][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-03 23:34:26.038][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-03 23:34:26.040][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-03 23:34:26.041][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-03 23:34:26.043][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-03 23:34:26.044][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-03 23:34:26.046][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-03 23:34:26.047][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-03 23:34:26.049][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-03 23:34:26.050][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-03 23:34:26.052][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-03 23:34:26.054][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-03 23:34:26.055][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-03 23:34:26.057][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-03 23:34:26.058][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-03 23:34:26.060][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-03 23:34:26.062][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-03 23:34:26.087][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-03 23:34:26.090][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-03 23:34:26.093][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:34:26.095][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.097][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:26.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:26.239][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-03 23:34:26.248][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:26.251][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:26.252][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-03 23:34:26.253][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:26.254][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:26.255][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:26.256][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-03 23:34:26.258][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:26.259][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:26.260][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-03 23:34:26.261][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:26.262][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:26.264][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-03 23:34:26.265][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-03 23:34:26.266][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-03 23:34:26.267][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:26.268][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:34:26.268][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-03 23:34:26.268][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-03 23:34:26.270][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-03 23:34:26.271][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:26.272][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:26.273][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:26.274][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:26.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:26.276][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:26.277][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-03 23:34:26.277][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-03 23:34:26.279][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:26.280][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:26.281][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:26.282][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:26.287][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-03 23:34:26.289][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-03 23:34:26.291][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-03 23:34:26.293][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-03 23:34:26.294][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-03 23:34:26.314][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:26.316][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-03 23:34:26.319][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:26.323][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:34:26.327][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:26.328][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:26.329][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-03 23:34:26.331][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-03 23:34:26.332][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-03 23:34:26.332][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-03 23:34:26.333][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:26.334][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:26.335][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-03 23:34:26.336][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-03 23:34:26.337][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:26.360][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:34:26.361][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:26.363][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:26.364][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:34:26.366][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:26.367][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-03 23:34:26.376][biodb::testThat]
biodb.INFO [2025-02-03 23:34:26.377][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-03 23:34:26.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:26.380][biodb::testThat]
biodb.TRACE[2025-02-03 23:34:26.398][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-02-03 23:34:26.401][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-03 23:34:26.404][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-03 23:34:26.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:34:26.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:26.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:26.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:26.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:26.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:26.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:34:26.604][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:26.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:26.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.607][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:26.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:26.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.624][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:26.626][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:26.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.650][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:26.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:26.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.655][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.656][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.665][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.666][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.670][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.685][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.686][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:26.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:26.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.700][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:26.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:26.706][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:26.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.715][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.724][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.732][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.734][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.736][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.742][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:26.743][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:26.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:26.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:26.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:26.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:26.763][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:26.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:26.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:26.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:26.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.781][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:26.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:26.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:26.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.790][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:26.792][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:26.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.800][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:26.801][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:26.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:26.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:26.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.810][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:34:26.811][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.815][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:34:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.860][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.888][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:26.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:26.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:26.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:26.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:26.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:26.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:26.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:26.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:26.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:26.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:26.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:27.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:27.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.019][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.085][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.090][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:34:27.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:34:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:27.226][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-03 23:34:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-03 23:34:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-03 23:34:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-03 23:34:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-03 23:34:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-03 23:34:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-03 23:34:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-03 23:34:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-03 23:34:27.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.354][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.392][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:27.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:27.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.411][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.421][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.426][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.427][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.464][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.466][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:27.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:27.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.544][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.576][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.577][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.581][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.610][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:27.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.673][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:27.674][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:27.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:27.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:27.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.717][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:27.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:27.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.746][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.751][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.760][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.761][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:27.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.862][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.863][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.913][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.914][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.949][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.950][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.989][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.991][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:27.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:27.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:27.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.238][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.252][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.257][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.258][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.261][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.283][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:28.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:28.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.293][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.295][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.312][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.313][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.346][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.347][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.381][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.382][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.391][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.393][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.402][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:28.403][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:28.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.413][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:28.415][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:28.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.429][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:28.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:28.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.440][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.459][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:28.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:28.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:28.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:28.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:28.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:28.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:28.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:28.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.557][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:28.558][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:28.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:28.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:28.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.576][ef$get] fields variable is a list.
biodb.INFO [2025-02-03 23:34:28.588][biodb::testThat]
biodb.INFO [2025-02-03 23:34:28.589][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-03 23:34:28.591][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:28.592][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:28.604][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-03 23:34:28.610][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-03 23:34:28.633][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:28.635][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-03 23:34:28.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-03 23:34:28.640][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-03 23:34:28.655][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-03 23:34:28.656][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-03 23:34:28.678][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-03 23:34:28.680][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-03 23:34:28.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:34:28.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:28.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:28.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:28.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:28.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:28.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:34:28.707][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:28.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:28.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:28.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.717][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:28.718][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:28.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.722][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:28.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.727][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.728][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.737][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.738][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.742][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.756][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.758][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.772][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:28.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:28.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:28.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:28.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:28.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.792][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.793][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.802][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.803][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.812][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:28.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:28.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.826][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:28.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:28.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:28.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:28.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:28.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.853][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:28.854][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:28.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.862][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:28.863][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:28.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:28.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:28.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:28.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:28.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.882][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:34:28.883][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:28.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:34:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:28.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:28.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.906][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.921][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:28.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:28.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:28.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:28.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:28.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:29.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:29.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:29.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:34:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:29.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:29.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:29.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:29.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:29.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:29.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:29.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:29.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:29.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:34:29.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:29.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:29.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:29.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.177][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.187][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:29.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:29.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:34:29.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:34:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:34:29.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:34:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:34:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:29.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.326][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-03 23:34:29.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-03 23:34:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-03 23:34:29.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-03 23:34:29.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-03 23:34:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-03 23:34:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-03 23:34:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-03 23:34:29.381][biodb::testThat]
biodb.INFO [2025-02-03 23:34:29.383][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-03 23:34:29.384][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:29.385][biodb::testThat]
biodb.TRACE[2025-02-03 23:34:29.389][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.392][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.394][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-02-03 23:34:29.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.570][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-02-03 23:34:29.571][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-03 23:34:29.572][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-03 23:34:29.573][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-03 23:34:29.575][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.577][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.579][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:34:29.581][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.582][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:34:29.584][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:34:29.585][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:34:29.586][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:34:29.588][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:34:29.589][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-03 23:34:29.590][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-03 23:34:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.597][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:29.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:29.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.612][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:34:29.613][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-03 23:34:29.614][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-03 23:34:29.651][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.653][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.655][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.657][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-02-03 23:34:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.690][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.696][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.708][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-02-03 23:34:29.752][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-03 23:34:29.754][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-03 23:34:29.755][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-03 23:34:29.767][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.769][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.771][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:34:29.773][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.774][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:34:29.787][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:34:29.788][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:34:29.790][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:34:29.791][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:34:29.792][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-03 23:34:29.793][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-03 23:34:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.810][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.815][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.819][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:34:29.821][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-03 23:34:29.822][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-03 23:34:29.849][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.850][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.853][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.854][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-02-03 23:34:29.880][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.885][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.890][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.897][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-02-03 23:34:29.899][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-02-03 23:34:29.900][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-03 23:34:29.901][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-03 23:34:29.903][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.905][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.907][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:34:29.908][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:29.910][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:34:29.911][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:34:29.913][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:34:29.914][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:34:29.915][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:34:29.916][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-03 23:34:29.917][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-03 23:34:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.929][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:29.934][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:29.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:29.939][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:34:29.940][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-03 23:34:29.941][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-02-03 23:34:29.981][biodb::testThat]
biodb.INFO [2025-02-03 23:34:29.982][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-03 23:34:29.984][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:29.985][biodb::testThat]
biodb.TRACE[2025-02-03 23:34:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:30.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:30.077][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-03 23:34:30.079][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-03 23:34:30.080][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-03 23:34:30.088][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:30.090][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:30.092][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:34:30.094][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:30.095][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:34:30.096][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:34:30.098][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:34:30.099][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:34:30.100][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:34:30.102][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-03 23:34:30.103][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-03 23:34:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:30.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:30.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:30.124][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:34:30.125][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-02-03 23:34:30.176][biodb::testThat]
biodb.INFO [2025-02-03 23:34:30.177][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-03 23:34:30.179][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:30.180][biodb::testThat]
biodb.TRACE[2025-02-03 23:34:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-03 23:34:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-03 23:34:30.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-03 23:34:30.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-03 23:34:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-03 23:34:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-03 23:34:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-03 23:34:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:30.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-03 23:34:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-03 23:34:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-03 23:34:30.308][biodb::testThat]
biodb.INFO [2025-02-03 23:34:30.309][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-03 23:34:30.310][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:30.312][biodb::testThat]
biodb.INFO [2025-02-03 23:34:30.337][biodb::testThat]
biodb.INFO [2025-02-03 23:34:30.339][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-03 23:34:30.341][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:30.342][biodb::testThat]
biodb.INFO [2025-02-03 23:34:30.359][biodb::testThat]
biodb.INFO [2025-02-03 23:34:30.361][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-03 23:34:30.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:30.363][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:30.367][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-02-03 23:34:35.131][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-02-03 23:34:49.677][biodb::testThat]
biodb.INFO [2025-02-03 23:34:49.679][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-03 23:34:49.681][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:49.682][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:49.831][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-02-03 23:34:58.407][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:58.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:58.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.412][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:58.414][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:58.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.417][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:58.419][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:58.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.421][ef$get] fields variable is a list.
biodb.INFO [2025-02-03 23:34:58.423][biodb::testThat]
biodb.INFO [2025-02-03 23:34:58.424][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-02-03 23:34:58.425][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:58.427][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:58.429][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-02-03 23:34:58.536][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-03 23:34:58.539][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.543][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-03 23:34:58.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-02-03 23:34:58.561][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-03 23:34:58.562][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-03 23:34:58.563][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-03 23:34:58.565][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.567][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-03 23:34:58.568][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-03 23:34:58.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:34:58.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:58.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:58.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:58.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:58.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:58.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:34:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:58.637][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-03 23:34:58.639][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-02-03 23:34:58.670][biodb::testThat]
biodb.INFO [2025-02-03 23:34:58.672][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-02-03 23:34:58.673][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:58.674][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:58.682][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-02-03 23:34:58.684][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-02-03 23:34:58.685][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-03 23:34:58.687][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.689][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-03 23:34:58.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-02-03 23:34:58.693][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-03 23:34:58.694][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-03 23:34:58.695][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-03 23:34:58.697][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.699][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-03 23:34:58.700][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-03 23:34:58.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:34:58.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:58.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:58.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:58.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:58.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:58.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:34:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.721][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:34:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:58.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:34:58.754][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-03 23:34:58.756][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-02-03 23:34:58.757][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-02-03 23:34:58.794][biodb::testThat]
biodb.INFO [2025-02-03 23:34:58.795][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-02-03 23:34:58.796][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:58.797][biodb::testThat]
biodb.INFO [2025-02-03 23:34:58.850][biodb::testThat]
biodb.INFO [2025-02-03 23:34:58.851][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-02-03 23:34:58.852][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:58.854][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:58.857][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.859][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.860][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:34:58.862][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.863][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:34:58.865][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:34:58.866][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:34:58.867][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:34:58.869][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-02-03 23:34:58.901][biodb::testThat]
biodb.INFO [2025-02-03 23:34:58.903][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-02-03 23:34:58.904][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:58.905][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:58.908][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.910][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.912][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:34:58.914][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:58.915][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:34:58.916][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:34:58.918][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:34:58.919][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:34:58.920][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-02-03 23:34:58.940][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:34:58.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:34:58.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.946][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:34:58.947][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:34:58.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:58.950][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:58.952][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:58.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:58.954][ef$get] fields variable is a list.
biodb.INFO [2025-02-03 23:34:58.955][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-03 23:34:58.957][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-03 23:34:58.964][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-03 23:34:58.965][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-03 23:34:58.966][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:58.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:58.968][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:58.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:58.971][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:58.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-03 23:34:58.977][biodb::testContext]
biodb.INFO [2025-02-03 23:34:58.978][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:34:58.980][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-02-03 23:34:58.981][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:34:58.982][biodb::testContext]
biodb.INFO [2025-02-03 23:34:58.988][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-03 23:34:58.990][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-03 23:34:58.995][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:34:58.997][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-03 23:34:58.998][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-03 23:34:58.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.002][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-03 23:34:59.004][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-03 23:34:59.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.008][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-03 23:34:59.009][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-03 23:34:59.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.019][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-03 23:34:59.021][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-03 23:34:59.022][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-03 23:34:59.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.027][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-03 23:34:59.028][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-03 23:34:59.029][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-03 23:34:59.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.033][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-03 23:34:59.035][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-03 23:34:59.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.039][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-03 23:34:59.040][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-03 23:34:59.041][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-03 23:34:59.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.046][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-03 23:34:59.047][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-03 23:34:59.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.051][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-03 23:34:59.053][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-03 23:34:59.054][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-03 23:34:59.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.058][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-03 23:34:59.060][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-03 23:34:59.061][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-03 23:34:59.062][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-03 23:34:59.063][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-03 23:34:59.064][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-03 23:34:59.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.069][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-03 23:34:59.070][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-03 23:34:59.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.074][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-03 23:34:59.076][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-03 23:34:59.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.080][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-03 23:34:59.081][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-03 23:34:59.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.086][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-03 23:34:59.087][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-03 23:34:59.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.091][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-03 23:34:59.092][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-03 23:34:59.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.097][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-03 23:34:59.098][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-03 23:34:59.101][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-03 23:34:59.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.106][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-03 23:34:59.107][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-03 23:34:59.108][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-03 23:34:59.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.113][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-03 23:34:59.115][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.116][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-03 23:34:59.118][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.119][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:59.120][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.122][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.124][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.125][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.126][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-03 23:34:59.127][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:59.129][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.130][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-03 23:34:59.131][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:59.132][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.133][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.135][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:34:59.135][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-03 23:34:59.135][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-03 23:34:59.135][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-03 23:34:59.135][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-03 23:34:59.136][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:59.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.139][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:59.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.142][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.143][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.144][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.145][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:59.146][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:59.147][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.149][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.155][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-03 23:34:59.158][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.159][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-03 23:34:59.160][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.161][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:59.163][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.164][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.165][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.166][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.167][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-03 23:34:59.169][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:59.170][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.171][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-03 23:34:59.172][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:59.173][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.175][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.176][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:34:59.176][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-03 23:34:59.176][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-03 23:34:59.176][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-03 23:34:59.176][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-03 23:34:59.177][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:59.179][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.180][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.181][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:59.182][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.183][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.184][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.185][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.187][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:59.188][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:59.189][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.190][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.192][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-03 23:34:59.194][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.195][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-03 23:34:59.196][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.197][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:59.198][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.200][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.201][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.202][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.203][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-03 23:34:59.204][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:59.206][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.207][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-03 23:34:59.208][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:59.209][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.210][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.212][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.213][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:59.214][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.215][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.216][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:59.217][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.218][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.220][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.221][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.222][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:59.223][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:59.224][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.225][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.227][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-03 23:34:59.229][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.230][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-03 23:34:59.231][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.232][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:59.234][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.235][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.236][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.237][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.239][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-03 23:34:59.240][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:59.241][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.242][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-03 23:34:59.243][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:59.245][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.246][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.247][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.248][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:34:59.249][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.251][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.252][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:59.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.255][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.256][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.258][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:59.259][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:59.260][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.261][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.263][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:34:59.264][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.381][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-03 23:34:59.384][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-03 23:34:59.387][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-03 23:34:59.389][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-03 23:34:59.392][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-03 23:34:59.394][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-03 23:34:59.397][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-03 23:34:59.400][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-03 23:34:59.402][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-03 23:34:59.405][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-03 23:34:59.407][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-03 23:34:59.410][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-03 23:34:59.413][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-03 23:34:59.415][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-03 23:34:59.417][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-03 23:34:59.419][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-03 23:34:59.420][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-03 23:34:59.422][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-03 23:34:59.424][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-03 23:34:59.425][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-03 23:34:59.427][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-03 23:34:59.428][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-03 23:34:59.430][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-03 23:34:59.432][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-03 23:34:59.433][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-03 23:34:59.435][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-03 23:34:59.436][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-03 23:34:59.438][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-03 23:34:59.439][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-03 23:34:59.447][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-03 23:34:59.449][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-03 23:34:59.450][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-03 23:34:59.452][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-03 23:34:59.453][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-03 23:34:59.455][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-03 23:34:59.456][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-03 23:34:59.458][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-03 23:34:59.460][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-03 23:34:59.461][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-03 23:34:59.463][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-03 23:34:59.464][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-03 23:34:59.466][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-03 23:34:59.467][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-03 23:34:59.469][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-03 23:34:59.471][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-03 23:34:59.472][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-03 23:34:59.474][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-03 23:34:59.475][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-03 23:34:59.477][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-03 23:34:59.478][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-03 23:34:59.480][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-03 23:34:59.482][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-03 23:34:59.483][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-03 23:34:59.485][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-03 23:34:59.486][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-03 23:34:59.488][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-03 23:34:59.489][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-03 23:34:59.491][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-03 23:34:59.493][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-03 23:34:59.494][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-03 23:34:59.496][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-03 23:34:59.497][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-03 23:34:59.499][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-03 23:34:59.500][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-03 23:34:59.502][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-03 23:34:59.504][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-03 23:34:59.505][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-03 23:34:59.507][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-03 23:34:59.508][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-03 23:34:59.510][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-03 23:34:59.511][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-03 23:34:59.513][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-03 23:34:59.515][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-03 23:34:59.516][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-03 23:34:59.518][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-03 23:34:59.519][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-03 23:34:59.521][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-03 23:34:59.523][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-03 23:34:59.524][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-03 23:34:59.526][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-03 23:34:59.527][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-03 23:34:59.529][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-03 23:34:59.531][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-03 23:34:59.532][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-03 23:34:59.535][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-03 23:34:59.536][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:34:59.537][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.539][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:34:59.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:34:59.692][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-03 23:34:59.694][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:59.696][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.697][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.698][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.699][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:34:59.701][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.702][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-03 23:34:59.703][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.705][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-03 23:34:59.707][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:34:59.708][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.714][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-03 23:34:59.715][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-03 23:34:59.717][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-03 23:34:59.718][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-03 23:34:59.719][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:34:59.719][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-03 23:34:59.719][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-03 23:34:59.721][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-03 23:34:59.722][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.723][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.724][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:34:59.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:34:59.726][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:34:59.727][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:34:59.728][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-03 23:34:59.728][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-03 23:34:59.730][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:59.731][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:59.732][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-03 23:34:59.733][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:34:59.734][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-03 23:34:59.736][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-03 23:34:59.738][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-03 23:34:59.739][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-03 23:34:59.741][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-03 23:34:59.744][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:59.746][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-03 23:34:59.747][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:59.749][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:34:59.750][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:59.751][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:59.753][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-03 23:34:59.754][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-03 23:34:59.755][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-03 23:34:59.755][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-03 23:34:59.756][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:34:59.758][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:34:59.759][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-03 23:34:59.760][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-03 23:34:59.761][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:34:59.763][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:34:59.764][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:59.765][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:59.767][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:34:59.768][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:34:59.769][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-03 23:34:59.771][biodb::testThat]
biodb.INFO [2025-02-03 23:34:59.773][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-02-03 23:34:59.774][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:59.775][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:59.780][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:59.782][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:59.783][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:34:59.785][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:59.786][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:34:59.788][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:34:59.789][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:34:59.790][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:34:59.792][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:34:59.795][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-02-03 23:34:59.811][biodb::testThat]
biodb.INFO [2025-02-03 23:34:59.812][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-02-03 23:34:59.813][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:34:59.815][biodb::testThat]
biodb.DEBUG[2025-02-03 23:34:59.817][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-03 23:34:59.818][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-03 23:34:59.820][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:34:59.822][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-03 23:34:59.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-03 23:34:59.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-03 23:34:59.842][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-03 23:34:59.843][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-03 23:34:59.845][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-03 23:34:59.846][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-03 23:34:59.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:34:59.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:34:59.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:34:59.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:34:59.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:34:59.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:34:59.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:34:59.873][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:59.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:59.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:34:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:34:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.889][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:59.890][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:59.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.892][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.894][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:59.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:34:59.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.899][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:59.900][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:59.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:34:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:34:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.908][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:59.910][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:59.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:34:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:34:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:59.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:59.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:34:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:34:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.928][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:59.929][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:59.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:34:59.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:59.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:59.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:34:59.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.948][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:59.949][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:59.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:59.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:34:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.958][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:59.959][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:59.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.961][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:59.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:34:59.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.968][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:59.969][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:59.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:59.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:34:59.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:59.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:59.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:34:59.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:34:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:59.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:59.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.991][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:34:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:34:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:34:59.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:34:59.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:34:59.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.016][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.024][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.027][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.033][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:00.035][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:00.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.038][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:00.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:00.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.043][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:00.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:00.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.047][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:00.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.053][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:35:00.055][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.058][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:35:00.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.078][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:00.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:00.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.083][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:00.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:00.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.088][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:00.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.103][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:00.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:00.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:00.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:00.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:00.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:00.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:00.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:00.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:00.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:00.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:00.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:00.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:00.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:00.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:00.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:00.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:00.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:00.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:00.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.221][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:00.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:00.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.230][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:00.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:00.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:00.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:00.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:00.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:00.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:00.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:00.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:00.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:00.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:00.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:00.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:00.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:00.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:00.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:00.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:00.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.425][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:00.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.438][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:00.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:00.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:00.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:00.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:00.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:00.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:00.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:35:00.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.477][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:35:00.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:00.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:00.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.507][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:00.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.512][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:00.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:00.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.521][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:00.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:00.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:00.562][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-03 23:35:00.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:00.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:00.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:00.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:00.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-03 23:35:00.586][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-03 23:35:00.587][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-03 23:35:00.589][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-03 23:35:00.590][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-03 23:35:00.591][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:00.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:00.593][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.596][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-03 23:35:00.602][biodb::testContext]
biodb.INFO [2025-02-03 23:35:00.604][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:35:00.605][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-02-03 23:35:00.606][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-03 23:35:00.607][biodb::testContext]
biodb.INFO [2025-02-03 23:35:00.614][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-03 23:35:00.617][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-03 23:35:00.622][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:35:00.623][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-03 23:35:00.625][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-03 23:35:00.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.629][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-03 23:35:00.630][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-03 23:35:00.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.635][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-03 23:35:00.636][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-03 23:35:00.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.640][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-03 23:35:00.642][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-03 23:35:00.643][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-03 23:35:00.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.647][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-03 23:35:00.648][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-03 23:35:00.650][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-03 23:35:00.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.654][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-03 23:35:00.655][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-03 23:35:00.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.660][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-03 23:35:00.661][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-03 23:35:00.662][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-03 23:35:00.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.667][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-03 23:35:00.668][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-03 23:35:00.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.678][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-03 23:35:00.680][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-03 23:35:00.681][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-03 23:35:00.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.686][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-03 23:35:00.687][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-03 23:35:00.688][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-03 23:35:00.689][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-03 23:35:00.691][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-03 23:35:00.692][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-03 23:35:00.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.696][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-03 23:35:00.698][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-03 23:35:00.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.702][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-03 23:35:00.703][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-03 23:35:00.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.708][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-03 23:35:00.709][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-03 23:35:00.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.713][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-03 23:35:00.715][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-03 23:35:00.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.719][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-03 23:35:00.721][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-03 23:35:00.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.725][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-03 23:35:00.726][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-03 23:35:00.730][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-03 23:35:00.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.734][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-03 23:35:00.736][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-03 23:35:00.737][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-03 23:35:00.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.742][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-03 23:35:00.744][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.746][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-03 23:35:00.748][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.750][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:35:00.752][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.754][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.756][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.759][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.761][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-03 23:35:00.763][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:35:00.765][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.767][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-03 23:35:00.769][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:35:00.771][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.773][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.775][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:35:00.775][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-03 23:35:00.775][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-03 23:35:00.775][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-03 23:35:00.775][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-03 23:35:00.777][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:35:00.779][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.783][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:35:00.785][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.786][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.788][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.790][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.792][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:35:00.793][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:35:00.794][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.796][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.797][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-03 23:35:00.799][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.800][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-03 23:35:00.801][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.803][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:35:00.804][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.805][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.806][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.808][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.809][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-03 23:35:00.810][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:35:00.811][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.812][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-03 23:35:00.814][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:35:00.815][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.816][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.817][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:35:00.817][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-03 23:35:00.817][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-03 23:35:00.817][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-03 23:35:00.817][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-03 23:35:00.818][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:35:00.820][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.822][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:35:00.829][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.831][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.833][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.834][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:35:00.835][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:35:00.836][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.837][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.839][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-03 23:35:00.841][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.842][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-03 23:35:00.843][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.844][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:35:00.845][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.847][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.848][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.849][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.850][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-03 23:35:00.851][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:35:00.853][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.854][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-03 23:35:00.855][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:35:00.856][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.857][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.859][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.860][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:35:00.861][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.862][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.863][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:35:00.865][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.866][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.867][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.868][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.869][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:35:00.870][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:35:00.872][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.873][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.874][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-03 23:35:00.876][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.877][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-03 23:35:00.878][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.880][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:35:00.881][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.882][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.883][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.884][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.886][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-03 23:35:00.887][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:35:00.888][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.889][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-03 23:35:00.891][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:35:00.892][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.893][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:00.894][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.895][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-03 23:35:00.897][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.899][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:35:00.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:00.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:00.902][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:35:00.904][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.905][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:35:00.906][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:35:00.907][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:00.908][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:00.910][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:35:00.911][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:00.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:00.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:00.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:00.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:00.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.033][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-03 23:35:01.035][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-03 23:35:01.036][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-03 23:35:01.038][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-03 23:35:01.040][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-03 23:35:01.041][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-03 23:35:01.043][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-03 23:35:01.045][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-03 23:35:01.046][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-03 23:35:01.048][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-03 23:35:01.050][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-03 23:35:01.051][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-03 23:35:01.053][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-03 23:35:01.054][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-03 23:35:01.056][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-03 23:35:01.058][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-03 23:35:01.059][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-03 23:35:01.061][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-03 23:35:01.063][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-03 23:35:01.064][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-03 23:35:01.066][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-03 23:35:01.067][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-03 23:35:01.069][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-03 23:35:01.071][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-03 23:35:01.072][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-03 23:35:01.074][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-03 23:35:01.075][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-03 23:35:01.077][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-03 23:35:01.079][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-03 23:35:01.080][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-03 23:35:01.082][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-03 23:35:01.084][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-03 23:35:01.085][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-03 23:35:01.087][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-03 23:35:01.088][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-03 23:35:01.090][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-03 23:35:01.091][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-03 23:35:01.093][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-03 23:35:01.095][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-03 23:35:01.102][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-03 23:35:01.104][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-03 23:35:01.105][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-03 23:35:01.107][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-03 23:35:01.109][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-03 23:35:01.110][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-03 23:35:01.112][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-03 23:35:01.113][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-03 23:35:01.115][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-03 23:35:01.117][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-03 23:35:01.118][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-03 23:35:01.120][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-03 23:35:01.121][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-03 23:35:01.123][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-03 23:35:01.125][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-03 23:35:01.126][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-03 23:35:01.128][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-03 23:35:01.129][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-03 23:35:01.131][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-03 23:35:01.133][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-03 23:35:01.134][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-03 23:35:01.136][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-03 23:35:01.138][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-03 23:35:01.139][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-03 23:35:01.141][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-03 23:35:01.142][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-03 23:35:01.144][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-03 23:35:01.146][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-03 23:35:01.147][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-03 23:35:01.149][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-03 23:35:01.150][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-03 23:35:01.152][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-03 23:35:01.154][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-03 23:35:01.155][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-03 23:35:01.157][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-03 23:35:01.159][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-03 23:35:01.160][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-03 23:35:01.162][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-03 23:35:01.164][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-03 23:35:01.165][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-03 23:35:01.167][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-03 23:35:01.169][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-03 23:35:01.170][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-03 23:35:01.172][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-03 23:35:01.174][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-03 23:35:01.176][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-03 23:35:01.178][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-03 23:35:01.179][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.181][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-03 23:35:01.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:01.323][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-03 23:35:01.325][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:35:01.327][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:01.328][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-03 23:35:01.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:01.331][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-03 23:35:01.332][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:01.333][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-03 23:35:01.334][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:01.336][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-03 23:35:01.337][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-03 23:35:01.338][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-03 23:35:01.339][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:01.340][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-03 23:35:01.342][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-03 23:35:01.343][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-03 23:35:01.344][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-03 23:35:01.346][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-03 23:35:01.346][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-03 23:35:01.346][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-03 23:35:01.347][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-03 23:35:01.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:01.355][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:01.356][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-03 23:35:01.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-03 23:35:01.358][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-03 23:35:01.360][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-03 23:35:01.361][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-03 23:35:01.361][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-03 23:35:01.362][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:35:01.363][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:35:01.364][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-03 23:35:01.365][self$setPropertyValue]
biodb.DEBUG[2025-02-03 23:35:01.367][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-03 23:35:01.369][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-03 23:35:01.370][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-03 23:35:01.372][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-03 23:35:01.374][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-03 23:35:01.377][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:35:01.378][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-03 23:35:01.380][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:35:01.381][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:35:01.383][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:35:01.384][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:35:01.386][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-03 23:35:01.387][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-03 23:35:01.388][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-03 23:35:01.388][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-03 23:35:01.390][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-03 23:35:01.391][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-03 23:35:01.392][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-03 23:35:01.393][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-03 23:35:01.394][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-03 23:35:01.396][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:35:01.397][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:35:01.399][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:35:01.400][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-03 23:35:01.402][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-03 23:35:01.403][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-03 23:35:01.405][biodb::testThat]
biodb.INFO [2025-02-03 23:35:01.406][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-02-03 23:35:01.407][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-03 23:35:01.408][biodb::testThat]
biodb.DEBUG[2025-02-03 23:35:01.411][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-03 23:35:01.412][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-03 23:35:01.413][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-03 23:35:01.418][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:01.420][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:01.422][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:35:01.423][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:01.425][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:35:01.426][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:35:01.428][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:35:01.429][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:35:01.430][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:35:01.431][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-03 23:35:01.433][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-02-03 23:35:01.435][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-03 23:35:01.436][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-03 23:35:01.438][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:01.440][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-03 23:35:01.442][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-03 23:35:01.444][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-03 23:35:01.448][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-03 23:35:01.449][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-03 23:35:01.451][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-03 23:35:01.452][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-03 23:35:01.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:01.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:01.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:01.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:01.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:01.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:01.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:35:01.476][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:01.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:01.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:01.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.487][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.488][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.492][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.503][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.504][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.513][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.514][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.533][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.534][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.543][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.555][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.564][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.574][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.575][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:01.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:01.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:01.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:01.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:01.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.635][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.647][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:01.648][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:01.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:01.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:01.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:01.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:01.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.667][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:35:01.668][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:35:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:01.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:01.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:01.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.692][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.701][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:01.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.716][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:01.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:01.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:01.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.800][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:01.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:01.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.805][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:01.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.810][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:01.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:01.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:01.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:01.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:01.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:01.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:01.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:01.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:01.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:01.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:01.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:01.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.927][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.932][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:01.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:01.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:01.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:01.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:35:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.971][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:35:01.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:01.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:01.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:01.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.015][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:02.056][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-03 23:35:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:02.077][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:35:02.078][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-03 23:35:02.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:02.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:02.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:02.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:02.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:02.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:02.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:02.094][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-03 23:35:02.095][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-03 23:35:02.097][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:02.099][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-03 23:35:02.101][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-03 23:35:02.103][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-03 23:35:02.106][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-03 23:35:02.107][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-03 23:35:02.109][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-03 23:35:02.110][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-03 23:35:02.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:02.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:02.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:02.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:02.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:02.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:02.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:35:02.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.143][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.149][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.151][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.159][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.161][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.164][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.170][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.171][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.197][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.198][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.210][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.227][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.228][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.237][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.238][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:02.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:02.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:02.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:02.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:02.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:02.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:02.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:02.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.287][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.290][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.297][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.298][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:02.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:02.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.310][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.322][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:35:02.324][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-03 23:35:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.349][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-03 23:35:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.370][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.375][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-03 23:35:02.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-03 23:35:02.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-03 23:35:02.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-03 23:35:02.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-03 23:35:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-03 23:35:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.468][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:02.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:02.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.483][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-03 23:35:02.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-03 23:35:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:02.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:02.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:02.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:02.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-03 23:35:02.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-03 23:35:02.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.526][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-03 23:35:02.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-03 23:35:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-03 23:35:02.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.574][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.579][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.589][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-03 23:35:02.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:02.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-03 23:35:02.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-03 23:35:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:35:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.629][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-03 23:35:02.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-03 23:35:02.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-03 23:35:02.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-03 23:35:02.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.659][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.664][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-03 23:35:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-03 23:35:02.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-03 23:35:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:02.707][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-03 23:35:02.709][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.730][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:02.735][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:35:02.736][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:35:02.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:02.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:02.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:02.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:02.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:02.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:02.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:02.766][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-03 23:35:02.768][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-03 23:35:02.769][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-03 23:35:02.771][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:02.773][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:02.775][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:35:02.776][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:02.778][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:35:02.779][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:35:02.781][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:35:02.782][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:35:02.783][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:35:02.785][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-03 23:35:02.786][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-03 23:35:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.808][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.822][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:02.830][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:35:02.832][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-03 23:35:02.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:02.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:02.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:02.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:02.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:02.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:02.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:35:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.866][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:02.902][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-03 23:35:02.903][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-03 23:35:02.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:02.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:02.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:02.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:02.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:02.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:02.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-03 23:35:02.922][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-03 23:35:02.924][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-03 23:35:02.925][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-03 23:35:02.927][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:02.929][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:02.931][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-03 23:35:02.932][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-03 23:35:02.934][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-03 23:35:02.935][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-03 23:35:02.937][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-03 23:35:02.938][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-03 23:35:02.939][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-03 23:35:02.940][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-03 23:35:02.942][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-03 23:35:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.958][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:02.978][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-03 23:35:02.979][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-02-03 23:35:02.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:02.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:02.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:02.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:02.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:02.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:02.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-03 23:35:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:03.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:03.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:03.004][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:03.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:03.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:03.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-03 23:35:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-03 23:35:03.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-03 23:35:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-03 23:35:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-03 23:35:03.035][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-03 23:35:03.036][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-03 23:35:03.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-03 23:35:03.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:03.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:03.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:03.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:03.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:03.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-03 23:35:03.071][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-03 23:35:03.073][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-03 23:35:03.074][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-03 23:35:03.075][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-03 23:35:03.076][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-03 23:35:03.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-03 23:35:03.078][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-03 23:35:03.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-03 23:35:03.081][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-03 23:35:03.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.43    0.40   39.93

CHECK results for biodbHmdb on palomino7

Summary

Command output

Installation output

Tests output

Example timings