| Back to Workflows build report for BioC 3.21 |
This page was generated on 2025-03-18 16:30 -0400 (Tue, 18 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4740 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4543 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 24/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| seqpac 1.7.0 (landing page) Daniel Natt
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | ERROR | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the seqpac package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: seqpac |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data seqpac |
| StartedAt: 2025-03-18 13:08:38 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 13:09:44 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 65.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data seqpac
###
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* checking for file ‘seqpac/DESCRIPTION’ ... OK
* preparing ‘seqpac’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’ using rmarkdown
# reads processed: 7902
# reads with at least one alignment: 7 (0.09%)
# reads that failed to align: 7895 (99.91%)
Reported 67 alignments
Quitting from seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd:160-189 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `options()`:
! invalid 'scipen'
---
Backtrace:
▆
1. └─seqpac::PAC_mapper(pac, ref = ref_tRNA, override = TRUE)
2. └─seqpac::map_reanno(...)
3. └─seqpac::import_reanno(...)
4. └─base::options(scipen = opt_sci)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd' failed with diagnostics:
invalid 'scipen'
--- failed re-building ‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’
SUMMARY: processing the following file failed:
‘seqpac_-_A_guide_to_sRNA_analysis_using_sequence-based_counts.Rmd’
Error: Vignette re-building failed.
Execution halted