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BioC 3.3: BUILD report for coMET on windows2.bioconductor.org

This page was generated on 2015-10-27 12:15:54 -0400 (Tue, 27 Oct 2015).

Package 212/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
coMET 1.3.0
Tiphaine Martin
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/coMET
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: coMET
Version: 1.3.0
Command: chmod a+r coMET -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data coMET
StartedAt: 2015-10-26 23:27:32 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 23:31:09 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 217.9 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r coMET -R && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data coMET
###
##############################################################################
##############################################################################


* checking for file 'coMET/DESCRIPTION' ... OK
* preparing 'coMET':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"c:/biocbld/bbs-3.3-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Warning: running command '"C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\texi2dvi.exe" --quiet --pdf "coMET.tex" --max-iterations=20 -I "c:/biocbld/bbs-3.3-bioc/R/share/texmf/tex/latex" -I "c:/biocbld/bbs-3.3-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'coMET.tex' failed

LaTeX errors:
ET.tex:830: pdfTeX error (ext4): \pdfendlink ended up in different nesting leve
l than \pdfstartlink

 
Here is how much of TeX's memory you used:
ET.tex:830:  ==> Fatal error occurred, no output PDF file produced!
Execution halted