BioC 3.3: CHECK report for MultiAssayExperiment on zin2

Package: MultiAssayExperiment

Version: 0.99.199

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_0.99.199.tar.gz

StartedAt: 2016-05-02 04:44:48 -0700 (Mon, 02 May 2016)

EndedAt: 2016-05-02 04:46:17 -0700 (Mon, 02 May 2016)

EllapsedTime: 88.8 seconds

RetCode: 0

Status:  OK

CheckDir: MultiAssayExperiment.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings MultiAssayExperiment_0.99.199.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/MultiAssayExperiment.Rcheck’
* using R version 3.3.0 RC (2016-04-25 r70549)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MultiAssayExperiment/DESCRIPTION’ ... OK
* this is package ‘MultiAssayExperiment’ version ‘0.99.199’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiAssayExperiment’ can be installed ... [7s/7s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/8s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’ [5s/5s]
 [6s/6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘MultiAssayExperiment’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MultiAssayExperiment)

name	user	system	elapsed
API	0.001	0.000	0.001
Elist-class	0.01	0.00	0.01
Elist-set	0.513	0.016	0.614
Elist	0.032	0.004	0.036
MultiAssayExperiment-class	0.005	0.000	0.005
MultiAssayExperiment	0.243	0.000	0.243
PrepMultiAssay	0.420	0.012	0.431
RangedRaggedAssay	0.121	0.000	0.121
assayMatrix	0.316	0.000	0.315
getHits	0.731	0.000	0.731
hasAssay	0.005	0.000	0.005
mapToList	0.060	0.004	0.065
sampleMap-set	0.271	0.004	0.275
sampleMap	0.02	0.00	0.02
subsetByAssay	0.486	0.004	0.489
subsetByColumn	0.636	0.008	0.643
subsetByRow	0.614	0.000	0.613