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BioC 3.3: INSTALL report for genoset on linux2.bioconductor.org

This page was generated on 2015-10-27 12:11:56 -0400 (Tue, 27 Oct 2015).

Package 428/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genoset 1.25.0
Peter M. Haverty
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genoset
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64 [ ERROR ] OK  ERROR 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  ERROR  OK  ERROR  ERROR 

Summary

Package: genoset
Version: 1.25.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL genoset
StartedAt: 2015-10-26 21:09:46 -0400 (Mon, 26 Oct 2015)
EndedAt: 2015-10-26 21:09:51 -0400 (Mon, 26 Oct 2015)
EllapsedTime: 5.3 seconds
RetCode: 1
Status:  ERROR 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL genoset
###
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* installing to library ‘/home/biocbuild/bbs-3.3-bioc/R/library’
* installing *source* package ‘genoset’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c bounds.c -o bounds.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rangeSummaries.c -o rangeSummaries.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c utils.c -o utils.o
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.3-bioc/R/lib -L/usr/local/lib -o genoset.so bounds.o init.o rangeSummaries.o utils.o -L/home/biocbuild/bbs-3.3-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.3-bioc/R/library/genoset/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error : class "GIntervalTree" is not exported by 'namespace:GenomicRanges'
ERROR: lazy loading failed for package ‘genoset’
* removing ‘/home/biocbuild/bbs-3.3-bioc/R/library/genoset’
* restoring previous ‘/home/biocbuild/bbs-3.3-bioc/R/library/genoset’