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BioC 3.3: CHECK report for genoset on windows2.bioconductor.org

This page was generated on 2015-10-27 12:14:47 -0400 (Tue, 27 Oct 2015).

Package 428/1104HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genoset 1.25.0
Peter M. Haverty
Snapshot Date: 2015-10-26 20:20:04 -0400 (Mon, 26 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genoset
Last Changed Rev: 109592 / Revision: 109948
Last Changed Date: 2015-10-13 15:59:53 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  ERROR  OK  ERROR 
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  ERROR  OK [ ERROR ] ERROR 

Summary

Package: genoset
Version: 1.25.0
Command: rm -rf genoset.buildbin-libdir genoset.Rcheck && mkdir genoset.buildbin-libdir genoset.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genoset.buildbin-libdir genoset_1.25.0.tar.gz >genoset.Rcheck\00install.out 2>&1 && cp genoset.Rcheck\00install.out genoset-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=genoset.buildbin-libdir --install="check:genoset-install.out" --force-multiarch --no-vignettes --timings genoset_1.25.0.tar.gz
StartedAt: 2015-10-27 02:44:41 -0400 (Tue, 27 Oct 2015)
EndedAt: 2015-10-27 02:44:48 -0400 (Tue, 27 Oct 2015)
EllapsedTime: 7.4 seconds
RetCode: 1
Status:  ERROR  
CheckDir: genoset.Rcheck
Warnings: NA

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf genoset.buildbin-libdir genoset.Rcheck && mkdir genoset.buildbin-libdir genoset.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genoset.buildbin-libdir genoset_1.25.0.tar.gz >genoset.Rcheck\00install.out 2>&1 && cp genoset.Rcheck\00install.out genoset-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=genoset.buildbin-libdir --install="check:genoset-install.out" --force-multiarch --no-vignettes --timings genoset_1.25.0.tar.gz
###
##############################################################################
##############################################################################

genoset.Rcheck/00install.out:


install for i386

* installing *source* package 'genoset' ...
** libs
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c bounds.c -o bounds.o
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rangeSummaries.c -o rangeSummaries.o
gcc -m32 -I"c:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local320/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c utils.c -o utils.o
gcc -m32 -shared -s -static-libgcc -o genoset.dll tmp.def bounds.o init.o rangeSummaries.o utils.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -Lc:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to c:/biocbld/bbs-3.3-bioc/meat/genoset.buildbin-libdir/genoset/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error : class "GIntervalTree" is not exported by 'namespace:GenomicRanges'
ERROR: lazy loading failed for package 'genoset'
* removing 'c:/biocbld/bbs-3.3-bioc/meat/genoset.buildbin-libdir/genoset'
Warning: running command 'c:/biocbld/bbs-3.3-bioc/R/bin/i386/Rcmd.exe INSTALL --library=genoset.buildbin-libdir genoset_1.25.0.tar.gz --no-multiarch' had status 1