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BioC experimental data: CHECK report for DvDdata on moscato1

This page was generated on 2016-05-28 20:31:14 -0700 (Sat, 28 May 2016).

Package 75/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DvDdata 1.9.0
J. Saez-Rodriguez
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/DvDdata
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: DvDdata
Version: 1.9.0
Command: rm -rf DvDdata.buildbin-libdir DvDdata.Rcheck && mkdir DvDdata.buildbin-libdir DvDdata.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DvDdata.buildbin-libdir DvDdata_1.9.0.tar.gz >DvDdata.Rcheck\00install.out 2>&1 && cp DvDdata.Rcheck\00install.out DvDdata-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=DvDdata.buildbin-libdir --install="check:DvDdata-install.out" --force-multiarch --no-vignettes --timings DvDdata_1.9.0.tar.gz
StartedAt: 2016-05-28 14:15:37 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 14:19:50 -0700 (Sat, 28 May 2016)
EllapsedTime: 253.2 seconds
RetCode: 0
Status:  OK  
CheckDir: DvDdata.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf DvDdata.buildbin-libdir DvDdata.Rcheck && mkdir DvDdata.buildbin-libdir DvDdata.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DvDdata.buildbin-libdir DvDdata_1.9.0.tar.gz >DvDdata.Rcheck\00install.out 2>&1 && cp DvDdata.Rcheck\00install.out DvDdata-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=DvDdata.buildbin-libdir --install="check:DvDdata-install.out" --force-multiarch --no-vignettes --timings DvDdata_1.9.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/DvDdata.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DvDdata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DvDdata' version '1.9.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DvDdata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 44.1Mb
  sub-directories of 1Mb or more:
    data  43.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: DvDdata-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: GEOfactorvalues.Rd:18-20: Dropping empty section \references
prepare_Rd: annotationlist.Rd:17-18: Dropping empty section \source
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/DvDdata.Rcheck/00check.log'
for details.


DvDdata.Rcheck/00install.out:


install for i386

* installing *source* package 'DvDdata' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'DvDdata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DvDdata' as DvDdata_1.9.0.zip
* DONE (DvDdata)

DvDdata.Rcheck/examples_i386/DvDdata-Ex.timings:

nameusersystemelapsed
DvDdata-package0.020.000.01
GEOfactorvalues000
annotationlist000
cytodisease000
cytodrug000
diseaseClusters000
diseaseRL0.000.020.01
diseaselabels000
drugClusters000
drugRL000
druglabels0.000.010.02
genelist000

DvDdata.Rcheck/examples_x64/DvDdata-Ex.timings:

nameusersystemelapsed
DvDdata-package0.030.000.03
GEOfactorvalues000
annotationlist0.010.000.01
cytodisease000
cytodrug000
diseaseClusters000
diseaseRL0.000.010.02
diseaselabels000
drugClusters000
drugRL000
druglabels0.000.000.01
genelist000