Georg Stricker
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/GenoGAM |
| Branch: RELEASE_3_8 |
| Last Commit: bb9cd4a |
| Last Changed Date: 2019-03-19 18:01:09 -0400 (Tue, 19 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:26:33 -0400 (Sat, 13 Apr 2019).
| Package 617/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenoGAM 2.0.3 Georg Stricker
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: GenoGAM |
| Version: 2.0.3 |
| Command: rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_2.0.3.tar.gz |
| StartedAt: 2019-04-13 07:18:34 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 07:19:53 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 79.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GenoGAM_2.0.3.zip |
| PackageFileSize: 5.226 MiB |
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### Running command:
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### rm -rf GenoGAM.buildbin-libdir && mkdir GenoGAM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenoGAM.buildbin-libdir GenoGAM_2.0.3.tar.gz
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install for i386
* installing *source* package 'GenoGAM' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c matrixMult.cpp -o matrixMult.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GenoGAM.dll tmp.def RcppExports.o matrixMult.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenoGAM'
finding HTML links ... done
Coordinates-class html
GenoGAM-class html
GenoGAM html
GenoGAMDataSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/Rtmp82Aj7S/R.INSTALL3be0394eb89/GenoGAM/man/GenoGAMDataSet-class.Rd:139: file link 'GenoGAMSettings' in package 'GenoGAM' does not exist and so has been treated as a topic
GenoGAMDataSet-metrics html
GenoGAMDataSet-subsetting html
GenoGAMDataSetList-class html
GenoGAMDataSetList-metrics html
GenoGAMDataSetList-subsetting html
GenoGAMFamily-class html
GenoGAMList-class html
GenoGAMList-subsetting html
GenoGAMSettings-class html
asCoordinates html
callPeaks html
computeRegionSignificance html
computeSignificance html
computeSizeFactors html
fitGenoGAM html
makeTestGenoGAM html
makeTestGenoGAMDataSet html
makeTestGenoGAMDataSetList html
makeTestGenoGAMList html
plotGenoGAM html
readData html
writeToBEDFile html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GenoGAM' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD=1 -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -fopenmp -O2 -Wall -mtune=generic -c matrixMult.cpp -o matrixMult.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GenoGAM.dll tmp.def RcppExports.o matrixMult.o -fopenmp -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/GenoGAM.buildbin-libdir/GenoGAM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenoGAM' as GenoGAM_2.0.3.zip
* DONE (GenoGAM)
In R CMD INSTALL
In R CMD INSTALL