Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2018-07-17 11:22:54 -0400 (Tue, 17 Jul 2018).
Package 339/1574 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
cytofkit 1.13.0 Jinmiao Chen
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: cytofkit |
Version: 1.13.0 |
Command: rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cytofkit_1.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cytofkit.buildbin-libdir |
StartedAt: 2018-07-17 03:24:07 -0400 (Tue, 17 Jul 2018) |
EndedAt: 2018-07-17 03:24:43 -0400 (Tue, 17 Jul 2018) |
EllapsedTime: 36.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: cytofkit_1.13.0.tgz |
PackageFileSize: 5.416 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cytofkit_1.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cytofkit.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cytofkit.buildbin-libdir cytofkit_1.13.0.tar.gz' >>>>>>> * installing *source* package ‘cytofkit’ ... ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c jaccard_coeff.cpp -o jaccard_coeff.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cytofkit.so RcppExports.o jaccard_coeff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/cytofkit.buildbin-libdir/cytofkit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (cytofkit) >>>>>>> >>>>>>> FIXING LINKS FOR cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so"