Back to Multiple platform build/check report for BioC 3.8
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for cytofkit on merida1

This page was generated on 2018-07-17 11:22:54 -0400 (Tue, 17 Jul 2018).

Package 339/1574HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cytofkit 1.13.0
Jinmiao Chen , Matthew Myint
Snapshot Date: 2018-07-16 16:45:08 -0400 (Mon, 16 Jul 2018)
URL: https://git.bioconductor.org/packages/cytofkit
Branch: master
Last Commit: bb50f38
Last Changed Date: 2018-04-30 10:41:40 -0400 (Mon, 30 Apr 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: cytofkit
Version: 1.13.0
Command: rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cytofkit_1.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cytofkit.buildbin-libdir
StartedAt: 2018-07-17 03:24:07 -0400 (Tue, 17 Jul 2018)
EndedAt: 2018-07-17 03:24:43 -0400 (Tue, 17 Jul 2018)
EllapsedTime: 36.8 seconds
RetCode: 0
Status:  OK 
PackageFile: cytofkit_1.13.0.tgz
PackageFileSize: 5.416 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cytofkit.buildbin-libdir && mkdir cytofkit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cytofkit_1.13.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cytofkit.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cytofkit.buildbin-libdir cytofkit_1.13.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cytofkit’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c jaccard_coeff.cpp -o jaccard_coeff.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cytofkit.so RcppExports.o jaccard_coeff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/cytofkit.buildbin-libdir/cytofkit/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cytofkit)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "cytofkit.buildbin-libdir/cytofkit/libs//cytofkit.so"