Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-03-19 11:46 -0400 (Wed, 19 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4742 |
palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 989/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.13.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.13.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.13.0.tar.gz |
StartedAt: 2025-03-18 19:48:13 -0400 (Tue, 18 Mar 2025) |
EndedAt: 2025-03-18 19:51:30 -0400 (Tue, 18 Mar 2025) |
EllapsedTime: 197.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.13.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck’ * using R Under development (unstable) (2025-03-02 r87868) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 14.2.0 * running under: macOS Ventura 13.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.13.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed FSmethod 18.057 0.793 19.167 var_imp 17.901 0.647 18.560 corr_plot 17.758 0.736 18.717 pred_ensembel 5.425 0.094 4.921 enrichfindP 0.163 0.025 8.509 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.21-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.13.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 99.410493 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 105.216222 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 95.570489 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 99.054764 final value 93.394928 converged Fitting Repeat 5 # weights: 103 initial value 94.555676 iter 10 value 93.394935 final value 93.394928 converged Fitting Repeat 1 # weights: 305 initial value 100.930786 iter 10 value 93.220099 iter 20 value 93.219812 final value 93.219807 converged Fitting Repeat 2 # weights: 305 initial value 97.295432 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 121.440003 iter 10 value 93.394942 final value 93.394928 converged Fitting Repeat 4 # weights: 305 initial value 111.491995 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 100.669275 iter 10 value 90.626259 iter 20 value 88.221978 iter 30 value 88.213084 final value 88.209464 converged Fitting Repeat 1 # weights: 507 initial value 102.290469 iter 10 value 94.448025 final value 93.394928 converged Fitting Repeat 2 # weights: 507 initial value 112.547837 iter 10 value 94.448069 final value 94.448053 converged Fitting Repeat 3 # weights: 507 initial value 104.497711 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 133.165050 iter 10 value 93.407084 final value 93.394928 converged Fitting Repeat 5 # weights: 507 initial value 111.039200 final value 93.911765 converged Fitting Repeat 1 # weights: 103 initial value 102.654891 iter 10 value 94.299107 iter 20 value 88.222942 iter 30 value 83.971411 iter 40 value 82.849593 iter 50 value 82.361258 iter 60 value 81.844104 iter 70 value 81.801183 final value 81.789110 converged Fitting Repeat 2 # weights: 103 initial value 98.598991 iter 10 value 94.487316 iter 20 value 94.236613 iter 30 value 93.677068 iter 40 value 93.615257 iter 50 value 88.061580 iter 60 value 84.037164 iter 70 value 83.033833 iter 80 value 82.138794 iter 90 value 82.046297 iter 100 value 82.015846 final value 82.015846 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 102.265560 iter 10 value 92.233678 iter 20 value 91.289292 iter 30 value 88.709093 iter 40 value 87.169509 iter 50 value 84.187331 iter 60 value 82.748834 iter 70 value 82.218049 iter 80 value 82.052429 iter 90 value 82.015854 final value 82.015843 converged Fitting Repeat 4 # weights: 103 initial value 97.140406 iter 10 value 93.744756 iter 20 value 91.265039 iter 30 value 86.435778 iter 40 value 86.171693 iter 50 value 85.803526 iter 60 value 85.337871 iter 70 value 85.279164 iter 80 value 84.863742 iter 90 value 84.532475 final value 84.527595 converged Fitting Repeat 5 # weights: 103 initial value 97.530412 iter 10 value 94.488317 iter 20 value 93.747973 iter 30 value 93.563948 iter 40 value 92.749005 iter 50 value 86.696143 iter 60 value 84.867832 iter 70 value 83.931297 iter 80 value 83.691176 iter 90 value 83.546974 iter 100 value 82.609303 final value 82.609303 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 106.140212 iter 10 value 94.477917 iter 20 value 93.577665 iter 30 value 91.467872 iter 40 value 87.505269 iter 50 value 87.209280 iter 60 value 86.666894 iter 70 value 85.221825 iter 80 value 84.054812 iter 90 value 83.965520 iter 100 value 83.457803 final value 83.457803 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.976931 iter 10 value 94.104690 iter 20 value 92.877091 iter 30 value 88.788176 iter 40 value 85.912086 iter 50 value 83.995133 iter 60 value 81.107885 iter 70 value 80.350599 iter 80 value 80.151828 iter 90 value 80.114882 iter 100 value 80.068932 final value 80.068932 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.526186 iter 10 value 94.432651 iter 20 value 89.204973 iter 30 value 84.604722 iter 40 value 83.728454 iter 50 value 83.102529 iter 60 value 82.739226 iter 70 value 82.370169 iter 80 value 81.472493 iter 90 value 80.901558 iter 100 value 80.755297 final value 80.755297 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 109.936229 iter 10 value 93.998684 iter 20 value 93.622095 iter 30 value 87.276956 iter 40 value 85.851429 iter 50 value 84.978542 iter 60 value 84.481760 iter 70 value 84.206175 iter 80 value 84.083932 iter 90 value 82.384213 iter 100 value 81.617625 final value 81.617625 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.409111 iter 10 value 94.564228 iter 20 value 94.197577 iter 30 value 86.116596 iter 40 value 85.477884 iter 50 value 84.964689 iter 60 value 82.985577 iter 70 value 81.680244 iter 80 value 81.209496 iter 90 value 80.935195 iter 100 value 80.871969 final value 80.871969 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 105.417146 iter 10 value 94.555321 iter 20 value 91.360114 iter 30 value 89.109141 iter 40 value 86.822777 iter 50 value 85.894304 iter 60 value 81.661228 iter 70 value 81.256809 iter 80 value 80.718835 iter 90 value 80.463113 iter 100 value 80.349328 final value 80.349328 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.589288 iter 10 value 96.366412 iter 20 value 93.278705 iter 30 value 89.061811 iter 40 value 86.369629 iter 50 value 85.593934 iter 60 value 83.522273 iter 70 value 81.545864 iter 80 value 80.741946 iter 90 value 80.618560 iter 100 value 80.458043 final value 80.458043 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.173339 iter 10 value 94.302716 iter 20 value 87.875700 iter 30 value 87.508379 iter 40 value 86.622166 iter 50 value 84.818769 iter 60 value 82.963402 iter 70 value 81.628950 iter 80 value 81.370083 iter 90 value 81.135280 iter 100 value 81.091534 final value 81.091534 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.313648 iter 10 value 94.959836 iter 20 value 94.080313 iter 30 value 86.683943 iter 40 value 85.625286 iter 50 value 85.384515 iter 60 value 84.854268 iter 70 value 81.858549 iter 80 value 81.485655 iter 90 value 81.139240 iter 100 value 80.730364 final value 80.730364 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.738322 iter 10 value 92.631610 iter 20 value 83.632463 iter 30 value 82.330225 iter 40 value 82.132740 iter 50 value 82.118840 iter 60 value 81.958756 iter 70 value 81.635441 iter 80 value 81.055942 iter 90 value 80.865422 iter 100 value 80.702667 final value 80.702667 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.088024 final value 94.485874 converged Fitting Repeat 2 # weights: 103 initial value 104.228579 final value 94.485930 converged Fitting Repeat 3 # weights: 103 initial value 97.057725 iter 10 value 94.484782 final value 94.484543 converged Fitting Repeat 4 # weights: 103 initial value 107.370395 iter 10 value 94.485958 iter 20 value 94.484269 final value 94.484216 converged Fitting Repeat 5 # weights: 103 initial value 100.161060 final value 94.485861 converged Fitting Repeat 1 # weights: 305 initial value 96.869118 iter 10 value 94.408438 iter 20 value 94.406767 iter 30 value 93.933889 final value 93.872020 converged Fitting Repeat 2 # weights: 305 initial value 101.556811 iter 10 value 94.009056 iter 20 value 93.876768 iter 30 value 93.762347 iter 40 value 93.344137 iter 50 value 93.341886 iter 60 value 92.174675 iter 70 value 85.950482 iter 80 value 84.423738 iter 90 value 83.651210 iter 100 value 83.522074 final value 83.522074 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.995368 iter 10 value 93.400124 iter 20 value 93.397649 iter 30 value 93.342415 iter 40 value 93.342104 iter 50 value 91.799060 iter 60 value 89.465312 iter 70 value 87.458356 iter 80 value 86.775120 iter 90 value 86.691645 final value 86.691643 converged Fitting Repeat 4 # weights: 305 initial value 104.972864 iter 10 value 93.400121 iter 20 value 93.396733 iter 30 value 93.395437 final value 93.395431 converged Fitting Repeat 5 # weights: 305 initial value 97.425502 iter 10 value 93.400428 iter 20 value 93.396963 iter 30 value 93.336349 final value 93.336144 converged Fitting Repeat 1 # weights: 507 initial value 106.175787 iter 10 value 94.492733 iter 20 value 94.484025 iter 30 value 93.174719 iter 40 value 86.344507 iter 50 value 85.929170 iter 60 value 85.764559 iter 70 value 85.756956 iter 80 value 85.581939 iter 90 value 84.691399 iter 100 value 84.619649 final value 84.619649 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 110.965940 iter 10 value 94.462325 iter 20 value 94.455555 iter 30 value 94.451973 iter 40 value 94.451546 iter 50 value 94.438931 iter 60 value 93.875546 iter 70 value 93.872187 iter 80 value 93.862334 final value 93.851934 converged Fitting Repeat 3 # weights: 507 initial value 96.383077 iter 10 value 88.940395 iter 20 value 87.730195 iter 30 value 87.654653 iter 40 value 87.653004 iter 50 value 86.961347 iter 60 value 86.777599 iter 70 value 86.777129 final value 86.776826 converged Fitting Repeat 4 # weights: 507 initial value 107.319305 iter 10 value 94.492065 iter 20 value 94.366390 iter 30 value 85.278828 iter 40 value 83.577512 iter 50 value 83.558427 iter 60 value 83.558188 final value 83.558174 converged Fitting Repeat 5 # weights: 507 initial value 112.101362 iter 10 value 93.920060 iter 20 value 93.912859 iter 30 value 93.726446 iter 40 value 93.341724 iter 50 value 93.276131 iter 50 value 93.276130 iter 50 value 93.276130 final value 93.276130 converged Fitting Repeat 1 # weights: 103 initial value 101.619156 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.925851 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 103.242178 final value 94.484210 converged Fitting Repeat 4 # weights: 103 initial value 104.704605 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.850323 iter 10 value 90.994725 iter 20 value 85.880607 iter 30 value 85.876041 final value 85.875862 converged Fitting Repeat 1 # weights: 305 initial value 102.700566 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 102.045833 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 102.602508 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 103.860107 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 102.377014 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 103.050119 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 100.955558 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 118.799788 final value 94.466823 converged Fitting Repeat 4 # weights: 507 initial value 94.633670 iter 10 value 94.431535 final value 94.427726 converged Fitting Repeat 5 # weights: 507 initial value 104.536127 iter 10 value 92.356488 iter 20 value 88.696654 final value 88.529084 converged Fitting Repeat 1 # weights: 103 initial value 104.509140 iter 10 value 94.502302 iter 20 value 91.232762 iter 30 value 85.845888 iter 40 value 85.241589 iter 50 value 84.878668 iter 60 value 84.092040 iter 70 value 83.632083 iter 80 value 83.598543 iter 90 value 83.598334 final value 83.598283 converged Fitting Repeat 2 # weights: 103 initial value 104.161152 iter 10 value 94.173720 iter 20 value 87.037423 iter 30 value 84.783721 iter 40 value 84.622622 iter 50 value 84.191932 iter 60 value 83.817106 final value 83.813039 converged Fitting Repeat 3 # weights: 103 initial value 103.926207 iter 10 value 94.499256 iter 20 value 93.720775 iter 30 value 86.739600 iter 40 value 84.431903 iter 50 value 84.109392 iter 60 value 83.467424 iter 70 value 83.384596 final value 83.384541 converged Fitting Repeat 4 # weights: 103 initial value 100.798343 iter 10 value 94.488309 iter 20 value 94.417711 iter 30 value 90.478059 iter 40 value 89.683896 iter 50 value 89.401089 iter 60 value 83.938057 iter 70 value 81.299102 iter 80 value 80.852282 iter 90 value 80.843062 final value 80.842883 converged Fitting Repeat 5 # weights: 103 initial value 117.205200 iter 10 value 94.266550 iter 20 value 86.221985 iter 30 value 85.492679 iter 40 value 84.609627 iter 50 value 84.095627 iter 60 value 83.983001 iter 70 value 83.943598 iter 80 value 83.829787 iter 90 value 83.813126 final value 83.813039 converged Fitting Repeat 1 # weights: 305 initial value 103.796743 iter 10 value 94.493047 iter 20 value 94.456592 iter 30 value 92.407352 iter 40 value 90.319045 iter 50 value 88.122864 iter 60 value 85.631912 iter 70 value 83.582732 iter 80 value 82.224057 iter 90 value 81.822350 iter 100 value 81.446975 final value 81.446975 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.678562 iter 10 value 94.466998 iter 20 value 88.970204 iter 30 value 85.749324 iter 40 value 84.662838 iter 50 value 83.655853 iter 60 value 81.717783 iter 70 value 81.131669 iter 80 value 80.757582 iter 90 value 80.269920 iter 100 value 80.096264 final value 80.096264 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 109.379190 iter 10 value 94.660258 iter 20 value 94.274815 iter 30 value 93.962343 iter 40 value 91.617266 iter 50 value 86.893886 iter 60 value 85.931357 iter 70 value 84.703921 iter 80 value 81.950264 iter 90 value 80.708027 iter 100 value 80.540229 final value 80.540229 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 103.970064 iter 10 value 95.628890 iter 20 value 95.339708 iter 30 value 94.691151 iter 40 value 91.503978 iter 50 value 90.472549 iter 60 value 88.325473 iter 70 value 84.998743 iter 80 value 82.441311 iter 90 value 80.892669 iter 100 value 79.576203 final value 79.576203 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 120.720590 iter 10 value 94.496408 iter 20 value 88.965315 iter 30 value 85.893018 iter 40 value 85.602337 iter 50 value 84.162835 iter 60 value 83.515121 iter 70 value 82.181694 iter 80 value 81.842553 iter 90 value 81.579501 iter 100 value 80.881447 final value 80.881447 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 108.877890 iter 10 value 94.739962 iter 20 value 94.065028 iter 30 value 92.989921 iter 40 value 85.491244 iter 50 value 81.447851 iter 60 value 80.692643 iter 70 value 80.199649 iter 80 value 79.568113 iter 90 value 79.481795 iter 100 value 79.437207 final value 79.437207 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.574395 iter 10 value 94.446822 iter 20 value 87.267201 iter 30 value 85.754124 iter 40 value 84.647373 iter 50 value 82.022035 iter 60 value 81.548017 iter 70 value 81.503512 iter 80 value 81.356949 iter 90 value 80.937400 iter 100 value 80.396618 final value 80.396618 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 116.718859 iter 10 value 94.470672 iter 20 value 90.738512 iter 30 value 87.199925 iter 40 value 84.005075 iter 50 value 82.852758 iter 60 value 82.381154 iter 70 value 82.190168 iter 80 value 81.690686 iter 90 value 81.051352 iter 100 value 80.451628 final value 80.451628 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.560201 iter 10 value 92.174507 iter 20 value 89.759981 iter 30 value 84.599048 iter 40 value 83.763932 iter 50 value 83.354720 iter 60 value 83.092138 iter 70 value 82.936710 iter 80 value 82.106171 iter 90 value 81.380270 iter 100 value 80.792982 final value 80.792982 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.189575 iter 10 value 94.515827 iter 20 value 94.464502 iter 30 value 94.156785 iter 40 value 85.953998 iter 50 value 85.310067 iter 60 value 84.586265 iter 70 value 83.306718 iter 80 value 80.399520 iter 90 value 80.038661 iter 100 value 79.688810 final value 79.688810 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 107.709239 final value 94.485893 converged Fitting Repeat 2 # weights: 103 initial value 105.867150 iter 10 value 94.485940 iter 20 value 94.460554 iter 30 value 90.831309 iter 40 value 85.883465 iter 50 value 85.878101 iter 60 value 85.757845 iter 60 value 85.757845 iter 60 value 85.757845 final value 85.757845 converged Fitting Repeat 3 # weights: 103 initial value 100.192471 final value 94.485743 converged Fitting Repeat 4 # weights: 103 initial value 97.534763 final value 94.090678 converged Fitting Repeat 5 # weights: 103 initial value 100.128640 final value 94.485910 converged Fitting Repeat 1 # weights: 305 initial value 95.541895 iter 10 value 94.489518 iter 20 value 93.467461 iter 30 value 85.915809 iter 40 value 85.880545 iter 50 value 85.879600 iter 60 value 85.879308 iter 70 value 85.835931 iter 80 value 84.980242 iter 90 value 84.979431 iter 100 value 84.976919 final value 84.976919 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 120.029297 iter 10 value 94.094626 iter 20 value 94.092467 iter 30 value 94.089721 iter 40 value 93.519063 iter 50 value 84.417641 iter 60 value 83.018420 iter 70 value 82.448861 final value 82.343638 converged Fitting Repeat 3 # weights: 305 initial value 117.939812 iter 10 value 94.489251 iter 20 value 94.140791 iter 30 value 91.046655 iter 40 value 91.008450 iter 50 value 87.344525 iter 60 value 87.335192 iter 70 value 87.333970 iter 80 value 83.820415 iter 90 value 83.674606 iter 100 value 83.589211 final value 83.589211 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 112.500857 iter 10 value 94.122097 iter 20 value 94.115906 iter 30 value 94.001175 iter 40 value 93.999573 iter 50 value 93.996602 iter 60 value 93.952564 iter 70 value 90.872616 iter 80 value 87.620420 iter 90 value 87.193384 iter 100 value 87.190406 final value 87.190406 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.713274 iter 10 value 94.472410 iter 20 value 94.467377 final value 94.467070 converged Fitting Repeat 1 # weights: 507 initial value 114.436623 iter 10 value 94.195282 iter 20 value 94.189688 iter 30 value 94.188851 iter 40 value 94.188720 iter 50 value 88.394875 iter 60 value 83.241665 iter 70 value 81.339818 iter 80 value 80.360951 iter 90 value 79.871230 iter 100 value 79.630599 final value 79.630599 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 95.615329 iter 10 value 94.474589 iter 20 value 94.429669 iter 30 value 94.428244 final value 94.428198 converged Fitting Repeat 3 # weights: 507 initial value 117.810681 iter 10 value 94.489654 iter 20 value 91.494164 iter 30 value 87.632310 iter 40 value 83.022206 iter 50 value 81.856489 iter 60 value 81.853132 iter 60 value 81.853132 final value 81.853132 converged Fitting Repeat 4 # weights: 507 initial value 117.388556 iter 10 value 88.773433 iter 20 value 85.833443 iter 30 value 85.765102 iter 40 value 85.757976 iter 50 value 85.677329 iter 60 value 85.672000 iter 70 value 85.036980 iter 80 value 82.630977 iter 90 value 82.533578 iter 100 value 82.505770 final value 82.505770 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 122.791669 iter 10 value 94.328274 iter 20 value 94.207356 iter 30 value 88.715083 iter 40 value 85.242972 iter 50 value 83.754652 iter 60 value 83.462518 iter 70 value 83.395763 iter 80 value 83.387848 iter 90 value 83.386876 iter 90 value 83.386876 final value 83.386876 converged Fitting Repeat 1 # weights: 103 initial value 99.861852 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 106.029854 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 97.958716 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 100.441108 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.800013 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 107.125671 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 97.090371 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 103.896436 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 107.237573 final value 94.354396 converged Fitting Repeat 5 # weights: 305 initial value 96.381461 iter 10 value 93.798817 iter 10 value 93.798817 iter 10 value 93.798817 final value 93.798817 converged Fitting Repeat 1 # weights: 507 initial value 97.563544 iter 10 value 94.254943 iter 20 value 93.865929 iter 30 value 92.940466 iter 40 value 91.948776 iter 50 value 91.710123 final value 91.708580 converged Fitting Repeat 2 # weights: 507 initial value 99.717383 iter 10 value 94.336217 final value 94.336207 converged Fitting Repeat 3 # weights: 507 initial value 105.620835 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 117.156630 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 114.097975 final value 94.461207 converged Fitting Repeat 1 # weights: 103 initial value 111.309252 iter 10 value 93.964556 iter 20 value 83.083692 iter 30 value 82.376211 iter 40 value 81.902329 iter 50 value 81.531384 iter 60 value 81.354850 iter 70 value 81.047159 iter 80 value 80.586824 iter 90 value 80.582489 iter 90 value 80.582489 iter 90 value 80.582489 final value 80.582489 converged Fitting Repeat 2 # weights: 103 initial value 100.492105 iter 10 value 94.488620 iter 20 value 94.037834 iter 30 value 93.834709 iter 40 value 93.731583 iter 50 value 92.641605 iter 60 value 86.132337 iter 70 value 84.360269 iter 80 value 82.215947 iter 90 value 81.741136 iter 100 value 81.493418 final value 81.493418 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 103.271810 iter 10 value 94.420846 iter 20 value 91.280247 iter 30 value 85.680252 iter 40 value 85.437246 iter 50 value 84.585361 iter 60 value 84.323076 iter 70 value 84.312140 final value 84.312115 converged Fitting Repeat 4 # weights: 103 initial value 101.067681 iter 10 value 94.482833 iter 20 value 93.940260 iter 30 value 86.820146 iter 40 value 83.952885 iter 50 value 82.599996 iter 60 value 81.891778 iter 70 value 81.034683 iter 80 value 80.701812 iter 90 value 80.583629 final value 80.582489 converged Fitting Repeat 5 # weights: 103 initial value 110.008129 iter 10 value 94.477249 iter 20 value 93.848135 iter 30 value 90.056113 iter 40 value 86.594353 iter 50 value 86.409991 iter 60 value 86.042109 iter 70 value 86.027647 iter 80 value 84.064845 iter 90 value 83.867588 iter 100 value 83.847992 final value 83.847992 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 114.988573 iter 10 value 94.566184 iter 20 value 86.012248 iter 30 value 84.957529 iter 40 value 83.680296 iter 50 value 80.920148 iter 60 value 80.131724 iter 70 value 79.915923 iter 80 value 79.687067 iter 90 value 79.442296 iter 100 value 79.250533 final value 79.250533 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.515972 iter 10 value 93.586927 iter 20 value 92.799359 iter 30 value 91.588406 iter 40 value 91.131234 iter 50 value 87.034333 iter 60 value 85.554852 iter 70 value 84.848864 iter 80 value 83.718771 iter 90 value 80.506150 iter 100 value 80.159916 final value 80.159916 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.010856 iter 10 value 94.642445 iter 20 value 89.250711 iter 30 value 86.702457 iter 40 value 85.528212 iter 50 value 83.258869 iter 60 value 81.918635 iter 70 value 80.720866 iter 80 value 80.006833 iter 90 value 79.616669 iter 100 value 79.498840 final value 79.498840 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.015906 iter 10 value 94.416206 iter 20 value 94.251005 iter 30 value 90.842600 iter 40 value 85.649173 iter 50 value 84.068575 iter 60 value 83.513139 iter 70 value 82.982236 iter 80 value 82.182161 iter 90 value 81.164038 iter 100 value 80.040225 final value 80.040225 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 116.502944 iter 10 value 95.186408 iter 20 value 93.849097 iter 30 value 87.314892 iter 40 value 83.199075 iter 50 value 81.537678 iter 60 value 81.016148 iter 70 value 80.795109 iter 80 value 80.509823 iter 90 value 80.302748 iter 100 value 79.983645 final value 79.983645 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.059664 iter 10 value 94.536748 iter 20 value 91.817620 iter 30 value 86.321305 iter 40 value 83.815155 iter 50 value 82.218159 iter 60 value 81.825345 iter 70 value 80.997409 iter 80 value 79.688157 iter 90 value 79.170648 iter 100 value 78.953661 final value 78.953661 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 117.929217 iter 10 value 94.374970 iter 20 value 91.461435 iter 30 value 87.775407 iter 40 value 84.856450 iter 50 value 82.400115 iter 60 value 82.049874 iter 70 value 81.466890 iter 80 value 80.424937 iter 90 value 79.553076 iter 100 value 79.433075 final value 79.433075 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 116.087894 iter 10 value 92.486330 iter 20 value 85.361765 iter 30 value 81.072040 iter 40 value 80.291559 iter 50 value 79.756475 iter 60 value 79.182387 iter 70 value 78.938639 iter 80 value 78.788808 iter 90 value 78.746857 iter 100 value 78.675555 final value 78.675555 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 110.832464 iter 10 value 88.470903 iter 20 value 85.600858 iter 30 value 81.492778 iter 40 value 80.914525 iter 50 value 80.206100 iter 60 value 80.057951 iter 70 value 79.466261 iter 80 value 79.422155 iter 90 value 79.274522 iter 100 value 79.128923 final value 79.128923 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.889274 iter 10 value 94.487251 iter 20 value 93.660051 iter 30 value 86.159772 iter 40 value 85.272828 iter 50 value 81.554010 iter 60 value 80.084944 iter 70 value 79.677361 iter 80 value 79.604914 iter 90 value 79.517954 iter 100 value 79.444803 final value 79.444803 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 112.020756 final value 94.490298 converged Fitting Repeat 2 # weights: 103 initial value 95.767391 iter 10 value 94.486011 iter 20 value 94.484255 final value 94.484214 converged Fitting Repeat 3 # weights: 103 initial value 102.135139 iter 10 value 94.485719 iter 20 value 94.484259 iter 30 value 94.369213 final value 94.354650 converged Fitting Repeat 4 # weights: 103 initial value 97.603041 final value 94.486116 converged Fitting Repeat 5 # weights: 103 initial value 97.377488 final value 94.485648 converged Fitting Repeat 1 # weights: 305 initial value 100.217111 iter 10 value 94.341427 iter 20 value 94.332680 iter 30 value 90.043179 iter 40 value 86.405227 iter 50 value 85.253607 iter 60 value 85.252781 iter 70 value 85.252000 iter 80 value 84.973384 iter 90 value 84.632194 iter 100 value 84.449239 final value 84.449239 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 97.995450 iter 10 value 94.488609 iter 20 value 86.295779 iter 30 value 84.655918 iter 40 value 84.325714 iter 50 value 84.320920 final value 84.320809 converged Fitting Repeat 3 # weights: 305 initial value 105.520426 iter 10 value 94.466234 iter 20 value 94.359561 iter 30 value 94.356079 iter 40 value 92.665502 iter 50 value 84.736339 iter 60 value 84.707388 iter 70 value 84.705981 iter 80 value 83.641940 iter 90 value 82.839637 iter 100 value 82.328462 final value 82.328462 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.940915 iter 10 value 94.488643 iter 20 value 94.252314 iter 30 value 84.728610 iter 40 value 84.508890 iter 50 value 84.414740 final value 84.413667 converged Fitting Repeat 5 # weights: 305 initial value 96.288961 iter 10 value 94.488999 iter 20 value 88.336913 iter 30 value 86.886625 iter 40 value 84.699913 iter 50 value 80.991846 iter 60 value 80.263961 iter 70 value 79.801648 final value 79.741953 converged Fitting Repeat 1 # weights: 507 initial value 96.046197 iter 10 value 88.091087 iter 20 value 84.875110 iter 30 value 84.653448 iter 40 value 83.318685 iter 50 value 82.976404 iter 60 value 82.972656 iter 70 value 82.970033 iter 80 value 81.325339 iter 90 value 81.250066 iter 100 value 81.248606 final value 81.248606 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 96.904236 iter 10 value 94.491270 iter 20 value 93.736726 iter 30 value 84.984847 iter 40 value 84.108534 iter 50 value 80.953250 iter 60 value 80.816913 iter 70 value 80.815532 iter 80 value 80.812896 iter 90 value 80.178801 iter 100 value 78.838807 final value 78.838807 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 96.293555 iter 10 value 94.492586 iter 20 value 94.484370 final value 94.484353 converged Fitting Repeat 4 # weights: 507 initial value 108.982845 iter 10 value 94.493421 iter 20 value 94.491620 iter 30 value 94.465803 iter 40 value 86.811787 iter 50 value 84.871546 iter 60 value 84.852809 final value 84.851934 converged Fitting Repeat 5 # weights: 507 initial value 128.604526 iter 10 value 94.492871 iter 20 value 94.480403 iter 30 value 92.067782 iter 40 value 86.149425 iter 50 value 84.410407 iter 60 value 84.341726 iter 70 value 84.339042 iter 80 value 84.338981 iter 90 value 84.338914 final value 84.338824 converged Fitting Repeat 1 # weights: 103 initial value 94.567694 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 97.064236 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 95.411551 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 96.839971 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 100.636661 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 94.563418 final value 93.991525 converged Fitting Repeat 2 # weights: 305 initial value 97.073968 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 95.312796 final value 93.991525 converged Fitting Repeat 4 # weights: 305 initial value 107.438678 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 104.256780 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 119.667614 final value 93.810010 converged Fitting Repeat 2 # weights: 507 initial value 102.968924 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 106.261858 final value 93.810010 converged Fitting Repeat 4 # weights: 507 initial value 94.373687 final value 92.514439 converged Fitting Repeat 5 # weights: 507 initial value 101.845532 iter 10 value 93.793862 final value 93.789014 converged Fitting Repeat 1 # weights: 103 initial value 102.928924 iter 10 value 94.049858 iter 20 value 91.497158 iter 30 value 90.277899 iter 40 value 85.838989 iter 50 value 85.703057 iter 60 value 85.414548 iter 70 value 83.178722 iter 80 value 83.138089 iter 90 value 83.121542 iter 100 value 83.116012 final value 83.116012 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.663538 iter 10 value 94.057572 iter 20 value 93.942827 iter 30 value 93.891465 iter 40 value 93.863597 iter 50 value 91.856920 iter 60 value 90.086600 iter 70 value 89.820988 iter 80 value 89.808023 final value 89.808010 converged Fitting Repeat 3 # weights: 103 initial value 100.346877 iter 10 value 94.069855 iter 20 value 92.602856 iter 30 value 83.605607 iter 40 value 83.524071 iter 50 value 83.502224 iter 60 value 83.480513 final value 83.479284 converged Fitting Repeat 4 # weights: 103 initial value 98.712591 iter 10 value 94.042827 iter 20 value 91.377202 iter 30 value 91.264041 iter 40 value 91.261820 final value 91.261813 converged Fitting Repeat 5 # weights: 103 initial value 102.679677 iter 10 value 93.960800 iter 20 value 86.565516 iter 30 value 86.217054 iter 40 value 86.133271 iter 50 value 83.604213 iter 60 value 83.523060 iter 70 value 83.518815 iter 80 value 83.496529 iter 90 value 83.479288 final value 83.479284 converged Fitting Repeat 1 # weights: 305 initial value 101.273835 iter 10 value 94.041846 iter 20 value 86.778039 iter 30 value 84.712798 iter 40 value 83.276901 iter 50 value 82.851023 iter 60 value 81.786619 iter 70 value 80.443365 iter 80 value 79.899541 iter 90 value 79.761817 iter 100 value 79.706154 final value 79.706154 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 104.463318 iter 10 value 92.282900 iter 20 value 86.034215 iter 30 value 83.281783 iter 40 value 82.902834 iter 50 value 82.562974 iter 60 value 81.536380 iter 70 value 79.782950 iter 80 value 79.140293 iter 90 value 78.980080 iter 100 value 78.941463 final value 78.941463 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.235719 iter 10 value 93.402245 iter 20 value 85.981169 iter 30 value 83.569396 iter 40 value 82.681352 iter 50 value 82.262185 iter 60 value 81.549752 iter 70 value 80.714709 iter 80 value 80.342475 iter 90 value 80.093047 iter 100 value 80.033251 final value 80.033251 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.892833 iter 10 value 95.031279 iter 20 value 94.352414 iter 30 value 86.276097 iter 40 value 83.189974 iter 50 value 83.151307 iter 60 value 83.113065 iter 70 value 82.326521 iter 80 value 81.353426 iter 90 value 80.474930 iter 100 value 80.025039 final value 80.025039 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.239689 iter 10 value 94.220826 iter 20 value 94.097011 iter 30 value 87.069007 iter 40 value 85.014965 iter 50 value 82.335855 iter 60 value 81.801391 iter 70 value 81.371594 iter 80 value 80.984959 iter 90 value 80.395655 iter 100 value 79.850852 final value 79.850852 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 123.875404 iter 10 value 94.119830 iter 20 value 88.499352 iter 30 value 85.100261 iter 40 value 83.851838 iter 50 value 82.699372 iter 60 value 81.861869 iter 70 value 81.430210 iter 80 value 81.227411 iter 90 value 80.535825 iter 100 value 80.226703 final value 80.226703 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 121.415044 iter 10 value 94.078319 iter 20 value 91.862382 iter 30 value 86.168459 iter 40 value 84.127480 iter 50 value 81.207394 iter 60 value 80.457262 iter 70 value 80.305088 iter 80 value 80.071094 iter 90 value 79.774980 iter 100 value 79.576313 final value 79.576313 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 119.653528 iter 10 value 94.334664 iter 20 value 93.592537 iter 30 value 84.306403 iter 40 value 83.259836 iter 50 value 83.067106 iter 60 value 82.294205 iter 70 value 81.115586 iter 80 value 80.638287 iter 90 value 80.108195 iter 100 value 79.799133 final value 79.799133 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.564067 iter 10 value 93.842065 iter 20 value 83.689265 iter 30 value 83.000863 iter 40 value 81.562660 iter 50 value 81.217646 iter 60 value 80.467290 iter 70 value 80.420942 iter 80 value 80.329087 iter 90 value 80.140964 iter 100 value 79.717322 final value 79.717322 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 123.249395 iter 10 value 94.540722 iter 20 value 93.590891 iter 30 value 84.887546 iter 40 value 83.332603 iter 50 value 82.712264 iter 60 value 82.603857 iter 70 value 82.560580 iter 80 value 82.264574 iter 90 value 81.534196 iter 100 value 81.200783 final value 81.200783 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.172114 final value 94.054592 converged Fitting Repeat 2 # weights: 103 initial value 95.772685 final value 94.054294 converged Fitting Repeat 3 # weights: 103 initial value 102.444345 final value 93.820481 converged Fitting Repeat 4 # weights: 103 initial value 96.119710 iter 10 value 94.052955 final value 94.052912 converged Fitting Repeat 5 # weights: 103 initial value 104.564803 final value 94.054574 converged Fitting Repeat 1 # weights: 305 initial value 96.677948 iter 10 value 94.057542 iter 20 value 94.052924 iter 30 value 93.971993 iter 40 value 90.418035 iter 50 value 83.978500 iter 60 value 83.789016 iter 70 value 83.781435 iter 80 value 83.781064 iter 90 value 83.779005 iter 100 value 83.773935 final value 83.773935 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.837746 iter 10 value 94.060255 iter 20 value 93.695287 iter 30 value 90.173487 iter 40 value 84.173819 iter 50 value 84.154631 iter 60 value 84.102833 iter 70 value 84.101306 iter 80 value 82.888452 iter 90 value 82.658434 iter 100 value 82.054615 final value 82.054615 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 95.501345 iter 10 value 93.720060 iter 20 value 92.891561 iter 30 value 92.706998 iter 40 value 84.891566 iter 50 value 84.832050 iter 60 value 82.206050 iter 70 value 82.180450 final value 82.180430 converged Fitting Repeat 4 # weights: 305 initial value 105.293842 iter 10 value 94.057741 iter 20 value 94.053201 iter 30 value 94.031391 iter 40 value 93.511540 iter 50 value 93.008265 iter 60 value 92.993779 iter 70 value 92.726372 iter 80 value 92.719048 final value 92.718995 converged Fitting Repeat 5 # weights: 305 initial value 95.111377 iter 10 value 94.057868 iter 20 value 94.052941 iter 30 value 92.702182 final value 92.702180 converged Fitting Repeat 1 # weights: 507 initial value 99.834055 iter 10 value 93.448087 iter 20 value 86.208326 iter 30 value 85.827653 iter 40 value 85.576484 iter 50 value 84.580120 iter 60 value 84.537905 iter 70 value 84.536684 iter 80 value 84.287366 iter 90 value 83.603407 iter 100 value 83.553264 final value 83.553264 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 94.193166 iter 10 value 93.727489 iter 20 value 93.712942 iter 30 value 93.711773 iter 40 value 89.262431 iter 50 value 82.272067 iter 60 value 82.268860 iter 70 value 82.180820 iter 80 value 82.180531 iter 90 value 80.890262 iter 100 value 79.186953 final value 79.186953 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 99.067358 iter 10 value 94.059638 iter 20 value 94.020019 iter 30 value 89.260697 iter 40 value 83.774403 iter 50 value 81.315126 iter 60 value 79.273024 iter 70 value 78.850767 iter 80 value 78.614202 iter 90 value 78.360155 iter 100 value 78.350928 final value 78.350928 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 96.196073 iter 10 value 94.060684 iter 20 value 92.191496 iter 30 value 84.349605 iter 40 value 84.341000 final value 84.340972 converged Fitting Repeat 5 # weights: 507 initial value 105.847066 iter 10 value 94.060450 iter 20 value 93.268708 iter 30 value 86.600932 iter 40 value 84.319894 iter 50 value 84.303649 iter 60 value 82.970966 iter 70 value 80.807722 iter 80 value 80.639293 iter 90 value 80.055658 iter 100 value 79.625256 final value 79.625256 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.411497 final value 93.867392 converged Fitting Repeat 2 # weights: 103 initial value 120.318286 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.365882 iter 10 value 93.867217 final value 93.855558 converged Fitting Repeat 4 # weights: 103 initial value 96.682063 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 98.050725 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 96.272414 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 113.052499 iter 10 value 93.701587 iter 10 value 93.701587 iter 10 value 93.701587 final value 93.701587 converged Fitting Repeat 3 # weights: 305 initial value 115.128359 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 98.598701 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 96.527524 iter 10 value 88.789254 iter 10 value 88.789254 iter 10 value 88.789253 final value 88.789253 converged Fitting Repeat 1 # weights: 507 initial value 105.498246 iter 10 value 88.988822 iter 20 value 88.969362 final value 88.969344 converged Fitting Repeat 2 # weights: 507 initial value 96.508860 final value 93.867392 converged Fitting Repeat 3 # weights: 507 initial value 95.260897 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 103.130034 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 99.048818 iter 10 value 93.555230 iter 20 value 87.048151 iter 30 value 86.468934 iter 40 value 86.468576 final value 86.468550 converged Fitting Repeat 1 # weights: 103 initial value 97.847499 iter 10 value 93.626532 iter 20 value 86.649516 iter 30 value 85.249706 iter 40 value 84.443474 iter 50 value 83.958676 iter 60 value 83.890228 iter 70 value 83.878848 iter 80 value 83.865847 final value 83.865841 converged Fitting Repeat 2 # weights: 103 initial value 102.566353 iter 10 value 94.056560 iter 20 value 94.033642 iter 30 value 86.228026 iter 40 value 84.073062 iter 50 value 83.913778 iter 60 value 83.866998 final value 83.865841 converged Fitting Repeat 3 # weights: 103 initial value 103.838438 iter 10 value 93.951375 iter 20 value 92.336360 iter 30 value 92.109466 iter 40 value 86.928815 iter 50 value 84.661591 iter 60 value 84.357995 iter 70 value 84.128668 final value 84.123995 converged Fitting Repeat 4 # weights: 103 initial value 97.448629 iter 10 value 93.918849 iter 20 value 87.945394 iter 30 value 85.865937 iter 40 value 85.018298 iter 50 value 84.931965 final value 84.928789 converged Fitting Repeat 5 # weights: 103 initial value 98.138827 iter 10 value 94.073663 iter 20 value 93.866667 iter 30 value 93.310795 iter 40 value 92.845278 iter 50 value 87.588606 iter 60 value 86.307627 iter 70 value 85.653113 iter 80 value 84.844547 iter 90 value 84.122892 iter 100 value 83.961442 final value 83.961442 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 108.818946 iter 10 value 94.143083 iter 20 value 92.614391 iter 30 value 92.351241 iter 40 value 89.332814 iter 50 value 84.789587 iter 60 value 84.314651 iter 70 value 83.782066 iter 80 value 83.123969 iter 90 value 82.247337 iter 100 value 81.302877 final value 81.302877 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.603231 iter 10 value 94.067234 iter 20 value 87.949324 iter 30 value 85.328438 iter 40 value 84.269450 iter 50 value 84.181055 iter 60 value 84.036130 iter 70 value 83.969569 iter 80 value 83.136040 iter 90 value 81.455173 iter 100 value 80.955632 final value 80.955632 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.366256 iter 10 value 93.982863 iter 20 value 85.883930 iter 30 value 84.882943 iter 40 value 84.729773 iter 50 value 83.860724 iter 60 value 82.857209 iter 70 value 82.147301 iter 80 value 82.090308 iter 90 value 82.081804 iter 100 value 82.078579 final value 82.078579 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.712060 iter 10 value 93.942726 iter 20 value 87.101301 iter 30 value 85.107586 iter 40 value 84.816499 iter 50 value 84.737377 iter 60 value 84.644581 iter 70 value 84.155054 iter 80 value 82.689675 iter 90 value 81.353622 iter 100 value 81.047584 final value 81.047584 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.833045 iter 10 value 94.091341 iter 20 value 88.241904 iter 30 value 85.586050 iter 40 value 84.505817 iter 50 value 84.119651 iter 60 value 83.699143 iter 70 value 82.732877 iter 80 value 81.687473 iter 90 value 81.104277 iter 100 value 80.833681 final value 80.833681 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.349714 iter 10 value 94.289637 iter 20 value 90.421150 iter 30 value 85.705742 iter 40 value 82.821045 iter 50 value 82.031096 iter 60 value 81.858546 iter 70 value 81.506067 iter 80 value 81.252500 iter 90 value 81.190084 iter 100 value 80.783173 final value 80.783173 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 113.713089 iter 10 value 95.032303 iter 20 value 94.004637 iter 30 value 93.649805 iter 40 value 93.312965 iter 50 value 90.485357 iter 60 value 88.562620 iter 70 value 83.862886 iter 80 value 81.291577 iter 90 value 80.762370 iter 100 value 80.736634 final value 80.736634 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 117.994392 iter 10 value 91.769742 iter 20 value 85.472266 iter 30 value 84.842929 iter 40 value 83.870744 iter 50 value 81.334988 iter 60 value 80.990893 iter 70 value 80.707544 iter 80 value 80.608441 iter 90 value 80.555285 iter 100 value 80.525418 final value 80.525418 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.206853 iter 10 value 95.638739 iter 20 value 86.840431 iter 30 value 85.601540 iter 40 value 83.609451 iter 50 value 82.998923 iter 60 value 82.378725 iter 70 value 81.372107 iter 80 value 80.878212 iter 90 value 80.715238 iter 100 value 80.658479 final value 80.658479 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 112.206225 iter 10 value 94.690939 iter 20 value 93.957130 iter 30 value 87.549000 iter 40 value 86.707209 iter 50 value 85.969721 iter 60 value 83.536253 iter 70 value 82.076743 iter 80 value 81.247928 iter 90 value 80.842822 iter 100 value 80.651746 final value 80.651746 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.949491 iter 10 value 87.271952 iter 20 value 84.997441 iter 30 value 84.995754 iter 40 value 83.934621 iter 50 value 83.927163 iter 60 value 83.918755 iter 70 value 83.833968 final value 83.833557 converged Fitting Repeat 2 # weights: 103 initial value 105.400540 final value 94.054602 converged Fitting Repeat 3 # weights: 103 initial value 94.648024 final value 94.054706 converged Fitting Repeat 4 # weights: 103 initial value 107.141867 iter 10 value 94.044692 iter 10 value 94.044691 iter 10 value 94.044691 final value 94.044691 converged Fitting Repeat 5 # weights: 103 initial value 101.123872 final value 94.054521 converged Fitting Repeat 1 # weights: 305 initial value 118.022846 iter 10 value 94.057973 iter 20 value 94.006305 iter 30 value 92.610074 iter 40 value 92.594830 iter 50 value 92.594716 iter 50 value 92.594715 final value 92.594713 converged Fitting Repeat 2 # weights: 305 initial value 95.734537 iter 10 value 94.030052 iter 20 value 93.872080 iter 30 value 85.289846 iter 40 value 84.910348 iter 50 value 84.901847 final value 84.901747 converged Fitting Repeat 3 # weights: 305 initial value 102.026691 iter 10 value 93.381766 iter 20 value 86.278647 iter 30 value 81.188309 iter 40 value 79.381637 iter 50 value 79.075627 iter 60 value 78.949373 iter 70 value 78.946650 iter 80 value 78.944352 final value 78.942284 converged Fitting Repeat 4 # weights: 305 initial value 97.596269 iter 10 value 94.057593 iter 20 value 93.438708 iter 30 value 91.219088 iter 40 value 91.153044 final value 91.153003 converged Fitting Repeat 5 # weights: 305 initial value 97.891627 iter 10 value 94.057131 iter 20 value 93.991477 iter 30 value 89.953660 iter 40 value 85.680192 iter 50 value 84.906796 iter 60 value 84.684696 iter 70 value 84.682951 iter 80 value 84.682538 final value 84.682365 converged Fitting Repeat 1 # weights: 507 initial value 106.401471 iter 10 value 88.345522 iter 20 value 87.650339 iter 30 value 87.604935 iter 40 value 87.577741 iter 50 value 87.572814 iter 60 value 87.565153 iter 70 value 87.563371 iter 80 value 87.563007 iter 90 value 87.481667 iter 100 value 86.559198 final value 86.559198 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 130.873423 iter 10 value 94.034304 iter 20 value 94.031458 iter 30 value 87.489836 iter 40 value 84.445943 iter 50 value 83.308765 iter 60 value 81.926977 iter 70 value 80.724951 iter 80 value 80.704023 final value 80.703716 converged Fitting Repeat 3 # weights: 507 initial value 118.912902 iter 10 value 94.056098 iter 20 value 93.975996 final value 93.868640 converged Fitting Repeat 4 # weights: 507 initial value 135.015561 iter 10 value 94.061232 iter 20 value 94.047170 iter 30 value 93.819868 iter 40 value 91.350776 iter 50 value 89.968829 iter 60 value 85.733001 iter 70 value 84.138103 iter 80 value 83.755847 iter 90 value 83.493499 iter 100 value 82.838444 final value 82.838444 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 94.898981 iter 10 value 94.060112 iter 20 value 94.052212 iter 30 value 85.167172 iter 40 value 84.676702 iter 50 value 84.656387 final value 84.655540 converged Fitting Repeat 1 # weights: 507 initial value 126.712228 iter 10 value 120.265278 iter 20 value 118.271182 iter 30 value 117.713691 iter 40 value 117.070201 iter 50 value 113.370733 iter 60 value 110.709599 iter 70 value 106.474621 iter 80 value 105.108039 iter 90 value 102.962613 iter 100 value 101.766399 final value 101.766399 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 129.985659 iter 10 value 119.695190 iter 20 value 108.470359 iter 30 value 108.065943 iter 40 value 107.514910 iter 50 value 106.245296 iter 60 value 104.956021 iter 70 value 103.019769 iter 80 value 102.277856 iter 90 value 102.208571 iter 100 value 102.184987 final value 102.184987 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 130.572298 iter 10 value 117.915769 iter 20 value 117.453750 iter 30 value 108.448755 iter 40 value 107.488387 iter 50 value 105.094350 iter 60 value 102.296663 iter 70 value 101.302365 iter 80 value 100.682148 iter 90 value 100.529617 iter 100 value 100.485391 final value 100.485391 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 150.291757 iter 10 value 118.372367 iter 20 value 111.422392 iter 30 value 105.997527 iter 40 value 105.592375 iter 50 value 105.054868 iter 60 value 103.775123 iter 70 value 103.480660 iter 80 value 103.422075 iter 90 value 103.296845 iter 100 value 102.552986 final value 102.552986 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 128.650243 iter 10 value 120.904612 iter 20 value 117.784295 iter 30 value 117.242117 iter 40 value 109.302106 iter 50 value 105.630611 iter 60 value 104.136780 iter 70 value 103.024237 iter 80 value 102.177332 iter 90 value 101.741693 iter 100 value 101.555346 final value 101.555346 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Tue Mar 18 19:51:26 2025 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 17.640 0.421 84.024
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 18.057 | 0.793 | 19.167 | |
FreqInteractors | 0.075 | 0.004 | 0.080 | |
calculateAAC | 0.013 | 0.002 | 0.015 | |
calculateAutocor | 0.142 | 0.026 | 0.168 | |
calculateCTDC | 0.027 | 0.002 | 0.028 | |
calculateCTDD | 0.184 | 0.012 | 0.196 | |
calculateCTDT | 0.082 | 0.004 | 0.086 | |
calculateCTriad | 0.142 | 0.009 | 0.151 | |
calculateDC | 0.031 | 0.002 | 0.033 | |
calculateF | 0.095 | 0.004 | 0.100 | |
calculateKSAAP | 0.032 | 0.003 | 0.034 | |
calculateQD_Sm | 0.630 | 0.059 | 0.691 | |
calculateTC | 0.543 | 0.051 | 0.593 | |
calculateTC_Sm | 0.10 | 0.01 | 0.11 | |
corr_plot | 17.758 | 0.736 | 18.717 | |
enrichfindP | 0.163 | 0.025 | 8.509 | |
enrichfind_hp | 0.025 | 0.012 | 1.069 | |
enrichplot | 0.118 | 0.004 | 0.122 | |
filter_missing_values | 0.000 | 0.000 | 0.001 | |
getFASTA | 0.028 | 0.006 | 3.809 | |
getHPI | 0 | 0 | 0 | |
get_negativePPI | 0.000 | 0.000 | 0.001 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.000 | 0.000 | 0.001 | |
plotPPI | 0.024 | 0.001 | 0.024 | |
pred_ensembel | 5.425 | 0.094 | 4.921 | |
var_imp | 17.901 | 0.647 | 18.560 | |