| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-12 11:34 -0400 (Thu, 12 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4806 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1009/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-11 19:07:05 -0400 (Wed, 11 Mar 2026) |
| EndedAt: 2026-03-11 19:10:33 -0400 (Wed, 11 Mar 2026) |
| EllapsedTime: 207.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-11 23:07:05 UTC
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 18.244 0.981 20.392
var_imp 18.100 1.083 20.695
FSmethod 17.561 0.898 19.335
pred_ensembel 6.653 0.170 6.728
enrichfindP 0.203 0.038 10.930
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 97.002370
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 101.019246
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.647399
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.314343
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.951357
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 97.018930
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 110.000389
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 102.336177
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 96.604636
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.848057
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 96.618641
final value 94.353550
converged
Fitting Repeat 2
# weights: 507
initial value 108.680968
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 107.663651
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 99.575933
iter 10 value 93.924456
iter 20 value 88.101338
final value 87.590733
converged
Fitting Repeat 5
# weights: 507
initial value 104.675741
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 102.981783
iter 10 value 94.488130
iter 20 value 89.639335
iter 30 value 87.363239
iter 40 value 86.688079
iter 50 value 86.230856
iter 60 value 86.227379
final value 86.227313
converged
Fitting Repeat 2
# weights: 103
initial value 114.539997
iter 10 value 94.265727
iter 20 value 88.206773
iter 30 value 86.074731
iter 40 value 85.923739
iter 50 value 85.841975
iter 60 value 85.545265
iter 70 value 85.439847
iter 80 value 85.432210
final value 85.432160
converged
Fitting Repeat 3
# weights: 103
initial value 98.237600
iter 10 value 92.401210
iter 20 value 88.293142
iter 30 value 86.940779
iter 40 value 85.735194
iter 50 value 85.490729
iter 60 value 85.339478
iter 70 value 85.267025
iter 80 value 85.163703
iter 90 value 85.094392
final value 85.093447
converged
Fitting Repeat 4
# weights: 103
initial value 98.943031
iter 10 value 94.454042
iter 20 value 88.622171
iter 30 value 88.287004
iter 40 value 87.025001
iter 50 value 86.470239
iter 60 value 85.653504
iter 70 value 85.465464
iter 80 value 85.050948
iter 90 value 84.927248
final value 84.927132
converged
Fitting Repeat 5
# weights: 103
initial value 105.635891
iter 10 value 94.503555
iter 20 value 93.548324
iter 30 value 88.900957
iter 40 value 87.415072
iter 50 value 87.207487
iter 60 value 86.085596
iter 70 value 86.037428
iter 80 value 85.875049
iter 90 value 85.617196
iter 100 value 85.482392
final value 85.482392
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.309606
iter 10 value 95.571162
iter 20 value 94.578085
iter 30 value 93.709421
iter 40 value 90.403727
iter 50 value 86.102304
iter 60 value 83.137746
iter 70 value 82.759274
iter 80 value 82.502176
iter 90 value 82.350373
iter 100 value 82.194250
final value 82.194250
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.491815
iter 10 value 94.427707
iter 20 value 88.833122
iter 30 value 88.068026
iter 40 value 87.120354
iter 50 value 86.963941
iter 60 value 85.616283
iter 70 value 85.493934
iter 80 value 85.311088
iter 90 value 85.231004
iter 100 value 85.181762
final value 85.181762
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.986009
iter 10 value 94.375101
iter 20 value 87.497371
iter 30 value 86.987880
iter 40 value 85.697070
iter 50 value 83.710736
iter 60 value 83.081812
iter 70 value 82.674289
iter 80 value 82.409241
iter 90 value 82.226004
iter 100 value 82.196349
final value 82.196349
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.849003
iter 10 value 94.525110
iter 20 value 94.402138
iter 30 value 94.382147
iter 40 value 90.457765
iter 50 value 86.868678
iter 60 value 84.413940
iter 70 value 83.039396
iter 80 value 82.377174
iter 90 value 82.272854
iter 100 value 82.241629
final value 82.241629
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.834045
iter 10 value 94.533799
iter 20 value 89.664074
iter 30 value 87.364426
iter 40 value 87.058447
iter 50 value 86.942202
iter 60 value 85.600178
iter 70 value 85.346031
iter 80 value 85.268190
iter 90 value 85.168176
iter 100 value 85.020758
final value 85.020758
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.955814
iter 10 value 92.413633
iter 20 value 86.414512
iter 30 value 86.081933
iter 40 value 84.971835
iter 50 value 84.293033
iter 60 value 83.932680
iter 70 value 83.133906
iter 80 value 82.739636
iter 90 value 82.277500
iter 100 value 82.166843
final value 82.166843
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.938010
iter 10 value 94.361719
iter 20 value 87.793987
iter 30 value 86.317669
iter 40 value 84.877555
iter 50 value 83.918684
iter 60 value 83.607618
iter 70 value 83.534769
iter 80 value 83.432194
iter 90 value 82.769104
iter 100 value 82.029935
final value 82.029935
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 136.554157
iter 10 value 95.108402
iter 20 value 94.702405
iter 30 value 91.136796
iter 40 value 85.965483
iter 50 value 84.140454
iter 60 value 83.235862
iter 70 value 82.554908
iter 80 value 82.422238
iter 90 value 82.163074
iter 100 value 81.879483
final value 81.879483
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.770527
iter 10 value 94.763420
iter 20 value 92.680763
iter 30 value 88.710422
iter 40 value 88.384164
iter 50 value 87.030763
iter 60 value 84.441124
iter 70 value 83.771793
iter 80 value 82.777577
iter 90 value 82.400374
iter 100 value 82.191137
final value 82.191137
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.563519
iter 10 value 94.188994
iter 20 value 88.196651
iter 30 value 86.958222
iter 40 value 84.411132
iter 50 value 83.305545
iter 60 value 82.897876
iter 70 value 82.454846
iter 80 value 82.121492
iter 90 value 82.057778
iter 100 value 81.857728
final value 81.857728
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.951105
iter 10 value 94.356092
iter 20 value 94.354459
iter 30 value 88.162173
final value 87.592963
converged
Fitting Repeat 2
# weights: 103
initial value 97.781939
iter 10 value 94.485772
iter 20 value 94.484269
final value 94.484214
converged
Fitting Repeat 3
# weights: 103
initial value 99.115017
final value 94.485834
converged
Fitting Repeat 4
# weights: 103
initial value 99.693012
final value 94.485666
converged
Fitting Repeat 5
# weights: 103
initial value 95.636487
iter 10 value 94.305661
iter 20 value 94.304834
iter 30 value 94.299194
iter 40 value 91.977240
final value 91.977190
converged
Fitting Repeat 1
# weights: 305
initial value 102.341945
iter 10 value 94.359060
iter 20 value 94.354541
final value 94.354535
converged
Fitting Repeat 2
# weights: 305
initial value 108.369498
iter 10 value 94.359473
iter 20 value 94.354860
final value 94.354544
converged
Fitting Repeat 3
# weights: 305
initial value 98.797099
iter 10 value 94.488738
iter 20 value 94.484345
iter 30 value 93.788891
final value 93.784015
converged
Fitting Repeat 4
# weights: 305
initial value 98.293106
iter 10 value 94.359344
iter 20 value 94.354756
final value 94.354518
converged
Fitting Repeat 5
# weights: 305
initial value 103.560428
iter 10 value 94.359084
iter 20 value 94.354986
final value 94.354894
converged
Fitting Repeat 1
# weights: 507
initial value 127.362480
iter 10 value 94.492050
iter 20 value 94.477403
iter 30 value 94.206939
iter 40 value 86.396412
iter 50 value 86.343007
iter 60 value 86.223188
final value 86.210926
converged
Fitting Repeat 2
# weights: 507
initial value 107.009710
iter 10 value 94.492261
iter 20 value 94.423235
iter 30 value 91.931158
final value 91.916750
converged
Fitting Repeat 3
# weights: 507
initial value 106.669992
iter 10 value 94.362403
iter 20 value 92.993276
iter 30 value 90.003106
iter 40 value 89.996828
iter 50 value 89.995165
iter 60 value 89.985212
iter 70 value 89.918883
iter 80 value 89.686318
iter 90 value 89.675771
iter 100 value 89.070913
final value 89.070913
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.696697
iter 10 value 94.492336
iter 20 value 94.447047
iter 30 value 89.228122
iter 40 value 86.721491
iter 50 value 86.720037
iter 60 value 86.719668
iter 70 value 86.718537
iter 80 value 86.718347
iter 90 value 86.717606
iter 100 value 86.620525
final value 86.620525
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.305547
iter 10 value 94.492298
iter 20 value 94.368334
iter 30 value 88.183444
iter 40 value 88.179266
iter 50 value 88.094384
iter 60 value 86.628945
iter 70 value 86.627366
iter 80 value 86.580451
iter 90 value 84.955633
iter 100 value 83.620186
final value 83.620186
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.189278
iter 10 value 84.318918
final value 84.318744
converged
Fitting Repeat 2
# weights: 103
initial value 94.962645
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 94.520396
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.681319
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.062973
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 104.747520
iter 10 value 92.321521
iter 20 value 92.051092
iter 30 value 92.050002
iter 30 value 92.050002
iter 30 value 92.050002
final value 92.050002
converged
Fitting Repeat 2
# weights: 305
initial value 100.308697
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 113.991151
final value 94.264858
converged
Fitting Repeat 4
# weights: 305
initial value 102.077677
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 99.122708
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 101.401810
iter 10 value 94.228680
final value 94.228678
converged
Fitting Repeat 2
# weights: 507
initial value 96.477079
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 103.280237
final value 94.443243
converged
Fitting Repeat 4
# weights: 507
initial value 95.844088
final value 94.443243
converged
Fitting Repeat 5
# weights: 507
initial value 117.702167
iter 10 value 90.373053
iter 20 value 84.431934
iter 30 value 84.399078
iter 40 value 84.318334
iter 50 value 84.317369
final value 84.317368
converged
Fitting Repeat 1
# weights: 103
initial value 98.522592
iter 10 value 94.488743
iter 20 value 94.404686
iter 30 value 93.601734
iter 40 value 93.583955
iter 50 value 92.424594
iter 60 value 87.309540
iter 70 value 87.232010
iter 80 value 86.218049
iter 90 value 84.945469
iter 100 value 84.063008
final value 84.063008
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 106.166385
iter 10 value 94.489347
iter 20 value 94.486520
iter 30 value 91.724024
iter 40 value 85.604499
iter 50 value 84.377202
iter 60 value 84.114707
iter 70 value 84.056159
iter 80 value 84.046628
iter 90 value 84.036896
final value 84.034961
converged
Fitting Repeat 3
# weights: 103
initial value 96.769909
iter 10 value 93.962835
iter 20 value 87.652611
iter 30 value 86.700580
iter 40 value 86.456938
iter 50 value 86.184493
iter 60 value 84.706089
iter 70 value 84.073256
iter 80 value 84.041507
final value 84.034961
converged
Fitting Repeat 4
# weights: 103
initial value 97.670941
iter 10 value 94.138855
iter 20 value 94.101901
iter 30 value 94.086927
iter 40 value 88.392106
iter 50 value 85.414079
iter 60 value 85.375482
iter 70 value 84.120103
iter 80 value 84.051899
final value 84.046477
converged
Fitting Repeat 5
# weights: 103
initial value 96.685862
iter 10 value 94.441901
iter 20 value 92.877475
iter 30 value 91.778885
iter 40 value 91.765288
iter 50 value 91.761228
iter 60 value 91.759250
iter 70 value 86.035461
iter 80 value 85.289678
iter 90 value 84.635873
iter 100 value 84.278709
final value 84.278709
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 126.646989
iter 10 value 94.548437
iter 20 value 92.526349
iter 30 value 89.044866
iter 40 value 85.678696
iter 50 value 84.505665
iter 60 value 82.328504
iter 70 value 81.400950
iter 80 value 81.238079
iter 90 value 81.156189
iter 100 value 81.038273
final value 81.038273
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.746214
iter 10 value 94.475228
iter 20 value 88.136378
iter 30 value 87.071906
iter 40 value 85.128343
iter 50 value 84.619445
iter 60 value 83.585413
iter 70 value 82.440204
iter 80 value 80.998641
iter 90 value 80.721666
iter 100 value 80.658420
final value 80.658420
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 117.080534
iter 10 value 94.486705
iter 20 value 86.704136
iter 30 value 85.799326
iter 40 value 84.824468
iter 50 value 83.062916
iter 60 value 82.077250
iter 70 value 81.521394
iter 80 value 81.028956
iter 90 value 80.583384
iter 100 value 80.419746
final value 80.419746
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.968423
iter 10 value 94.150371
iter 20 value 85.935440
iter 30 value 84.527567
iter 40 value 83.971057
iter 50 value 83.922251
iter 60 value 83.878899
iter 70 value 82.335753
iter 80 value 81.542702
iter 90 value 81.250723
iter 100 value 80.572719
final value 80.572719
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.171243
iter 10 value 94.554095
iter 20 value 90.384825
iter 30 value 86.982741
iter 40 value 86.560082
iter 50 value 86.458041
iter 60 value 86.231234
iter 70 value 84.672494
iter 80 value 83.499337
iter 90 value 82.330436
iter 100 value 82.106935
final value 82.106935
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.575842
iter 10 value 93.673561
iter 20 value 87.841603
iter 30 value 86.894295
iter 40 value 82.215262
iter 50 value 81.692027
iter 60 value 81.227130
iter 70 value 80.732421
iter 80 value 80.116333
iter 90 value 79.685220
iter 100 value 79.604018
final value 79.604018
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.580657
iter 10 value 96.728422
iter 20 value 94.565145
iter 30 value 91.121209
iter 40 value 89.463218
iter 50 value 86.273895
iter 60 value 85.731959
iter 70 value 85.117012
iter 80 value 82.447704
iter 90 value 80.710698
iter 100 value 80.141078
final value 80.141078
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.062480
iter 10 value 93.883039
iter 20 value 93.192756
iter 30 value 85.916817
iter 40 value 84.592977
iter 50 value 82.668087
iter 60 value 82.064972
iter 70 value 81.761216
iter 80 value 81.536431
iter 90 value 81.170799
iter 100 value 80.784837
final value 80.784837
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.567970
iter 10 value 94.701057
iter 20 value 89.592970
iter 30 value 85.944939
iter 40 value 81.622639
iter 50 value 81.196854
iter 60 value 81.038886
iter 70 value 80.860625
iter 80 value 80.555744
iter 90 value 80.526062
iter 100 value 80.455626
final value 80.455626
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.349197
iter 10 value 96.168247
iter 20 value 94.274124
iter 30 value 89.900159
iter 40 value 89.325050
iter 50 value 88.029775
iter 60 value 85.124289
iter 70 value 82.624423
iter 80 value 81.591185
iter 90 value 81.169736
iter 100 value 80.637955
final value 80.637955
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 108.330606
iter 10 value 94.486022
iter 20 value 94.484222
final value 94.484219
converged
Fitting Repeat 2
# weights: 103
initial value 101.405836
final value 94.485867
converged
Fitting Repeat 3
# weights: 103
initial value 103.087028
final value 94.486074
converged
Fitting Repeat 4
# weights: 103
initial value 103.894566
final value 94.485743
converged
Fitting Repeat 5
# weights: 103
initial value 101.883835
final value 94.485807
converged
Fitting Repeat 1
# weights: 305
initial value 98.646746
iter 10 value 92.313908
iter 20 value 92.306923
iter 30 value 92.303688
iter 40 value 91.591348
iter 50 value 91.590314
iter 60 value 91.590193
iter 70 value 91.589836
final value 91.589570
converged
Fitting Repeat 2
# weights: 305
initial value 98.421603
iter 10 value 94.448529
iter 20 value 94.437675
iter 30 value 91.489331
iter 40 value 86.735924
iter 50 value 86.123358
iter 60 value 86.121721
final value 86.121696
converged
Fitting Repeat 3
# weights: 305
initial value 109.009876
iter 10 value 94.489100
iter 20 value 94.229660
iter 30 value 87.853434
iter 40 value 86.261134
iter 50 value 86.259973
iter 60 value 86.258395
iter 70 value 86.257818
iter 80 value 86.255480
iter 90 value 86.250771
iter 100 value 86.250231
final value 86.250231
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.528169
iter 10 value 87.386889
iter 20 value 86.107980
iter 30 value 86.053012
final value 86.052612
converged
Fitting Repeat 5
# weights: 305
initial value 113.290136
iter 10 value 94.489130
iter 20 value 94.483160
iter 30 value 94.052387
iter 40 value 93.998117
final value 93.998013
converged
Fitting Repeat 1
# weights: 507
initial value 105.196774
iter 10 value 94.492727
iter 20 value 94.218567
iter 30 value 93.300956
iter 40 value 88.077766
iter 50 value 82.541727
iter 60 value 82.397337
iter 70 value 82.392568
final value 82.392531
converged
Fitting Repeat 2
# weights: 507
initial value 99.759271
iter 10 value 94.451881
iter 20 value 94.444731
iter 30 value 94.361163
iter 40 value 91.589530
iter 50 value 84.817814
iter 60 value 84.684011
iter 70 value 84.680501
iter 80 value 84.680286
iter 90 value 84.678477
iter 100 value 84.596444
final value 84.596444
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 127.856680
iter 10 value 94.491752
iter 20 value 94.465220
iter 30 value 92.920501
iter 40 value 82.749207
iter 50 value 82.298399
iter 60 value 82.264756
iter 70 value 82.264435
iter 80 value 82.257728
iter 90 value 82.153550
iter 100 value 81.122689
final value 81.122689
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 130.673348
iter 10 value 94.492625
iter 20 value 94.427914
iter 30 value 85.639003
iter 40 value 84.684520
iter 50 value 84.683892
final value 84.683674
converged
Fitting Repeat 5
# weights: 507
initial value 94.670794
iter 10 value 90.510824
iter 20 value 88.721943
iter 30 value 88.701742
iter 40 value 88.699827
iter 50 value 88.698545
iter 60 value 88.697913
iter 70 value 88.695630
iter 80 value 88.541871
iter 90 value 87.767595
iter 100 value 85.511482
final value 85.511482
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.460521
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.323899
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 106.026761
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.803576
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 103.394474
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 98.152352
iter 10 value 93.891983
iter 20 value 93.883904
final value 93.883852
converged
Fitting Repeat 2
# weights: 305
initial value 97.896033
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 99.408870
final value 94.032967
converged
Fitting Repeat 4
# weights: 305
initial value 105.671446
final value 94.032967
converged
Fitting Repeat 5
# weights: 305
initial value 100.642288
iter 10 value 93.261231
final value 93.153846
converged
Fitting Repeat 1
# weights: 507
initial value 114.386273
iter 10 value 94.033002
final value 94.032967
converged
Fitting Repeat 2
# weights: 507
initial value 96.688997
final value 93.991525
converged
Fitting Repeat 3
# weights: 507
initial value 99.877599
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 122.637666
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 114.625465
final value 93.991526
converged
Fitting Repeat 1
# weights: 103
initial value 96.888367
iter 10 value 93.969308
iter 20 value 91.373725
iter 30 value 91.085795
iter 40 value 91.023246
iter 50 value 90.252473
iter 60 value 90.207878
final value 90.207848
converged
Fitting Repeat 2
# weights: 103
initial value 98.114915
iter 10 value 94.056868
iter 20 value 93.838436
iter 30 value 88.199190
iter 40 value 83.496541
iter 50 value 83.095980
iter 60 value 82.852623
iter 70 value 81.669807
iter 80 value 80.979544
iter 90 value 80.932619
iter 90 value 80.932619
iter 90 value 80.932619
final value 80.932619
converged
Fitting Repeat 3
# weights: 103
initial value 105.261135
iter 10 value 88.823692
iter 20 value 85.995569
iter 30 value 84.711793
iter 40 value 84.360775
iter 50 value 84.319729
iter 60 value 84.297773
iter 70 value 84.279748
iter 80 value 82.367768
iter 90 value 81.399214
iter 100 value 80.376121
final value 80.376121
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 100.541209
iter 10 value 93.848289
iter 20 value 85.985773
iter 30 value 85.049479
iter 40 value 84.568971
iter 50 value 84.530312
iter 60 value 83.715118
iter 70 value 80.584937
iter 80 value 80.042181
iter 90 value 79.962681
iter 100 value 79.895322
final value 79.895322
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 106.567920
iter 10 value 93.986109
iter 20 value 87.292317
iter 30 value 86.366419
iter 40 value 84.913924
iter 50 value 84.449971
iter 60 value 84.309727
iter 70 value 84.278820
iter 80 value 79.958490
iter 90 value 79.859936
iter 100 value 79.859749
final value 79.859749
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 109.457672
iter 10 value 94.046854
iter 20 value 88.417992
iter 30 value 84.323398
iter 40 value 82.589607
iter 50 value 81.188925
iter 60 value 80.222898
iter 70 value 79.749599
iter 80 value 79.392114
iter 90 value 78.992643
iter 100 value 78.663933
final value 78.663933
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.045325
iter 10 value 89.281515
iter 20 value 82.223447
iter 30 value 79.626116
iter 40 value 78.875346
iter 50 value 77.678472
iter 60 value 76.699545
iter 70 value 76.575345
iter 80 value 76.329222
iter 90 value 76.171489
iter 100 value 76.126139
final value 76.126139
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.024494
iter 10 value 94.078382
iter 20 value 92.809171
iter 30 value 89.580039
iter 40 value 82.561919
iter 50 value 81.099087
iter 60 value 80.240403
iter 70 value 79.710774
iter 80 value 79.159702
iter 90 value 78.825213
iter 100 value 78.713395
final value 78.713395
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 114.716655
iter 10 value 95.250756
iter 20 value 94.077533
iter 30 value 89.738154
iter 40 value 80.226525
iter 50 value 79.697131
iter 60 value 79.572095
iter 70 value 78.849874
iter 80 value 78.077373
iter 90 value 77.649513
iter 100 value 77.589018
final value 77.589018
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.541420
iter 10 value 94.063250
iter 20 value 94.040624
iter 30 value 93.465192
iter 40 value 93.327359
iter 50 value 89.641567
iter 60 value 80.019327
iter 70 value 79.703969
iter 80 value 79.582549
iter 90 value 79.464786
iter 100 value 79.381769
final value 79.381769
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.376396
iter 10 value 93.145079
iter 20 value 83.521468
iter 30 value 81.886253
iter 40 value 78.501338
iter 50 value 76.831073
iter 60 value 76.563891
iter 70 value 76.391631
iter 80 value 76.236988
iter 90 value 76.191626
iter 100 value 76.133985
final value 76.133985
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 144.563799
iter 10 value 94.160214
iter 20 value 88.053289
iter 30 value 83.459937
iter 40 value 78.950500
iter 50 value 77.844814
iter 60 value 77.581952
iter 70 value 77.366831
iter 80 value 77.197674
iter 90 value 76.926431
iter 100 value 76.824839
final value 76.824839
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.094930
iter 10 value 87.129899
iter 20 value 84.116334
iter 30 value 80.068064
iter 40 value 79.028017
iter 50 value 78.337319
iter 60 value 77.194395
iter 70 value 76.905916
iter 80 value 76.237878
iter 90 value 75.989649
iter 100 value 75.726506
final value 75.726506
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.429906
iter 10 value 94.011030
iter 20 value 84.268913
iter 30 value 81.462916
iter 40 value 80.823311
iter 50 value 80.210540
iter 60 value 79.425533
iter 70 value 78.923687
iter 80 value 78.683093
iter 90 value 78.229579
iter 100 value 78.099452
final value 78.099452
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.972598
iter 10 value 94.502897
iter 20 value 83.755232
iter 30 value 82.954379
iter 40 value 80.579370
iter 50 value 78.880230
iter 60 value 78.358106
iter 70 value 77.791691
iter 80 value 77.553715
iter 90 value 77.290448
iter 100 value 77.117284
final value 77.117284
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.057187
iter 10 value 94.034540
iter 20 value 93.998169
iter 30 value 85.031986
iter 40 value 84.116055
iter 50 value 81.721024
final value 81.216814
converged
Fitting Repeat 2
# weights: 103
initial value 100.339192
iter 10 value 94.054577
final value 94.052915
converged
Fitting Repeat 3
# weights: 103
initial value 102.113803
final value 94.054695
converged
Fitting Repeat 4
# weights: 103
initial value 100.918636
final value 94.054882
converged
Fitting Repeat 5
# weights: 103
initial value 94.134798
final value 94.054448
converged
Fitting Repeat 1
# weights: 305
initial value 107.994713
iter 10 value 94.058079
iter 20 value 94.052855
iter 30 value 92.992506
iter 40 value 91.859153
final value 91.823402
converged
Fitting Repeat 2
# weights: 305
initial value 98.053872
iter 10 value 94.053162
iter 20 value 92.580064
iter 30 value 91.954221
iter 40 value 91.848161
iter 50 value 91.847652
iter 60 value 87.964584
iter 70 value 81.556932
iter 80 value 81.051238
final value 80.981387
converged
Fitting Repeat 3
# weights: 305
initial value 115.373792
iter 10 value 94.059158
final value 94.054859
converged
Fitting Repeat 4
# weights: 305
initial value 115.900466
iter 10 value 94.058083
iter 20 value 93.936705
iter 30 value 86.065157
iter 40 value 84.939104
iter 50 value 84.802014
iter 60 value 84.796483
iter 70 value 84.402044
iter 80 value 84.222836
iter 90 value 84.219575
iter 100 value 84.091402
final value 84.091402
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 94.123859
iter 10 value 94.037478
iter 20 value 94.033022
iter 30 value 89.098860
iter 40 value 88.406954
final value 88.405734
converged
Fitting Repeat 1
# weights: 507
initial value 94.500140
iter 10 value 94.059306
iter 20 value 93.860555
iter 30 value 84.907064
iter 40 value 84.411398
iter 50 value 84.406919
iter 60 value 84.151750
iter 70 value 83.117699
iter 80 value 83.036910
iter 90 value 81.204107
iter 100 value 81.078147
final value 81.078147
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.337156
iter 10 value 93.977326
iter 20 value 93.706793
iter 30 value 86.781709
iter 40 value 86.473294
iter 50 value 86.187535
iter 60 value 80.071280
iter 70 value 76.523409
iter 80 value 76.451274
final value 76.446695
converged
Fitting Repeat 3
# weights: 507
initial value 111.221229
iter 10 value 93.976033
iter 20 value 93.969767
iter 30 value 88.691058
iter 40 value 81.081394
iter 50 value 79.136485
iter 60 value 77.260716
iter 70 value 76.896541
iter 80 value 76.750853
iter 90 value 76.724260
final value 76.718600
converged
Fitting Repeat 4
# weights: 507
initial value 100.417053
iter 10 value 94.061075
iter 20 value 93.996233
iter 30 value 84.112493
iter 40 value 84.019029
iter 50 value 81.335970
iter 60 value 80.017303
iter 70 value 78.428360
iter 80 value 78.427847
iter 90 value 78.390326
iter 100 value 78.075797
final value 78.075797
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 97.808268
iter 10 value 94.058566
iter 20 value 91.926809
iter 30 value 90.182146
iter 40 value 89.406813
iter 50 value 88.936177
iter 60 value 88.857494
iter 70 value 88.825786
final value 88.821363
converged
Fitting Repeat 1
# weights: 103
initial value 98.392740
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.107756
final value 94.483333
converged
Fitting Repeat 3
# weights: 103
initial value 97.904772
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.520870
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.945873
iter 10 value 93.670246
final value 93.572293
converged
Fitting Repeat 1
# weights: 305
initial value 124.174567
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.701719
final value 94.088889
converged
Fitting Repeat 3
# weights: 305
initial value 98.447722
final value 94.448052
converged
Fitting Repeat 4
# weights: 305
initial value 109.039138
final value 94.461538
converged
Fitting Repeat 5
# weights: 305
initial value 98.265404
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 96.354852
iter 10 value 90.328108
iter 20 value 86.263984
iter 30 value 86.187907
iter 40 value 86.174219
final value 86.157328
converged
Fitting Repeat 2
# weights: 507
initial value 117.124337
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 100.889796
iter 10 value 87.074426
iter 20 value 86.525711
iter 30 value 86.464533
final value 86.464479
converged
Fitting Repeat 4
# weights: 507
initial value 105.729026
iter 10 value 94.134496
final value 94.055814
converged
Fitting Repeat 5
# weights: 507
initial value 98.232748
iter 10 value 93.553953
iter 20 value 93.161760
final value 93.161539
converged
Fitting Repeat 1
# weights: 103
initial value 103.477244
iter 10 value 94.406969
iter 20 value 93.766301
iter 30 value 86.743664
iter 40 value 83.971803
iter 50 value 83.458257
iter 60 value 83.080341
iter 70 value 82.767320
iter 80 value 82.459380
iter 90 value 82.286594
final value 82.286570
converged
Fitting Repeat 2
# weights: 103
initial value 107.042991
iter 10 value 94.663002
iter 20 value 94.383977
iter 30 value 91.814058
iter 40 value 85.312860
iter 50 value 84.571774
iter 60 value 82.566946
iter 70 value 82.208319
final value 82.136930
converged
Fitting Repeat 3
# weights: 103
initial value 110.400656
iter 10 value 94.013315
iter 20 value 89.413110
iter 30 value 88.913460
iter 40 value 88.836237
iter 50 value 88.095538
iter 60 value 86.741837
iter 70 value 85.975776
iter 80 value 85.961669
final value 85.961609
converged
Fitting Repeat 4
# weights: 103
initial value 99.287240
iter 10 value 94.490738
iter 20 value 94.281365
iter 30 value 93.978850
iter 40 value 92.725708
iter 50 value 88.187345
iter 60 value 87.088323
iter 70 value 86.808871
iter 80 value 86.200977
iter 90 value 86.033660
iter 100 value 85.961905
final value 85.961905
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.988547
iter 10 value 91.946354
iter 20 value 88.855823
iter 30 value 87.857768
iter 40 value 85.704169
iter 50 value 85.604784
iter 60 value 85.569612
final value 85.561261
converged
Fitting Repeat 1
# weights: 305
initial value 111.322211
iter 10 value 96.444686
iter 20 value 93.470511
iter 30 value 88.361016
iter 40 value 84.197878
iter 50 value 83.017410
iter 60 value 82.864272
iter 70 value 82.530676
iter 80 value 82.257135
iter 90 value 82.132028
iter 100 value 81.640897
final value 81.640897
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.745394
iter 10 value 94.349645
iter 20 value 93.692218
iter 30 value 93.653504
iter 40 value 89.536247
iter 50 value 88.576916
iter 60 value 88.151745
iter 70 value 85.971921
iter 80 value 83.544072
iter 90 value 82.201001
iter 100 value 81.458861
final value 81.458861
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.167889
iter 10 value 92.957107
iter 20 value 87.334486
iter 30 value 86.341549
iter 40 value 83.831619
iter 50 value 83.238248
iter 60 value 82.781558
iter 70 value 81.933011
iter 80 value 81.876156
iter 90 value 81.753027
iter 100 value 81.289240
final value 81.289240
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.835951
iter 10 value 94.432005
iter 20 value 93.732390
iter 30 value 93.701632
iter 40 value 93.383262
iter 50 value 92.177075
iter 60 value 89.798654
iter 70 value 88.018400
iter 80 value 85.673286
iter 90 value 84.229124
iter 100 value 83.644809
final value 83.644809
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.311665
iter 10 value 89.716938
iter 20 value 87.656889
iter 30 value 85.753447
iter 40 value 85.503911
iter 50 value 85.402116
iter 60 value 85.362707
iter 70 value 85.060256
iter 80 value 83.139753
iter 90 value 82.520054
iter 100 value 81.266684
final value 81.266684
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.225293
iter 10 value 95.121117
iter 20 value 85.754068
iter 30 value 84.226441
iter 40 value 83.450218
iter 50 value 82.136465
iter 60 value 81.560904
iter 70 value 81.293081
iter 80 value 81.164523
iter 90 value 81.113645
iter 100 value 81.027232
final value 81.027232
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.471911
iter 10 value 94.753277
iter 20 value 87.575656
iter 30 value 85.677154
iter 40 value 82.492542
iter 50 value 81.964541
iter 60 value 81.591646
iter 70 value 81.257712
iter 80 value 81.175500
iter 90 value 81.081905
iter 100 value 80.804353
final value 80.804353
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.259352
iter 10 value 93.702941
iter 20 value 92.844539
iter 30 value 89.659526
iter 40 value 85.862528
iter 50 value 83.749866
iter 60 value 82.188448
iter 70 value 81.518409
iter 80 value 80.946710
iter 90 value 80.611995
iter 100 value 80.504500
final value 80.504500
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.563743
iter 10 value 94.758985
iter 20 value 94.302516
iter 30 value 91.887940
iter 40 value 88.798610
iter 50 value 85.923279
iter 60 value 85.336215
iter 70 value 84.020262
iter 80 value 83.299305
iter 90 value 82.729020
iter 100 value 82.514499
final value 82.514499
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.056044
iter 10 value 92.517067
iter 20 value 91.304016
iter 30 value 90.939953
iter 40 value 87.014689
iter 50 value 83.680685
iter 60 value 83.065890
iter 70 value 82.873685
iter 80 value 82.182415
iter 90 value 82.047259
iter 100 value 81.847779
final value 81.847779
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.201948
final value 94.485567
converged
Fitting Repeat 2
# weights: 103
initial value 97.090761
final value 94.485773
converged
Fitting Repeat 3
# weights: 103
initial value 96.723518
final value 94.485989
converged
Fitting Repeat 4
# weights: 103
initial value 99.153650
iter 10 value 94.486029
iter 20 value 94.277141
iter 30 value 88.021675
iter 40 value 87.968189
iter 50 value 87.967882
iter 60 value 86.896206
final value 86.896196
converged
Fitting Repeat 5
# weights: 103
initial value 94.643262
iter 10 value 93.102103
iter 20 value 88.920740
iter 30 value 88.604045
iter 40 value 86.636564
iter 50 value 86.623889
iter 60 value 86.618887
iter 70 value 86.617683
final value 86.617675
converged
Fitting Repeat 1
# weights: 305
initial value 122.273847
iter 10 value 87.946398
iter 20 value 83.428018
iter 30 value 83.424567
final value 83.424157
converged
Fitting Repeat 2
# weights: 305
initial value 106.856996
iter 10 value 93.778156
iter 20 value 93.774510
iter 30 value 93.498286
iter 40 value 83.490945
iter 50 value 83.369882
final value 83.369459
converged
Fitting Repeat 3
# weights: 305
initial value 105.838160
iter 10 value 92.028406
iter 20 value 91.818889
iter 30 value 91.818274
iter 30 value 91.818273
final value 91.818270
converged
Fitting Repeat 4
# weights: 305
initial value 96.652422
iter 10 value 93.778492
iter 20 value 93.777886
iter 30 value 93.773564
iter 40 value 93.773495
final value 93.773491
converged
Fitting Repeat 5
# weights: 305
initial value 109.107400
iter 10 value 94.489152
iter 20 value 93.984406
iter 30 value 93.595155
final value 93.540875
converged
Fitting Repeat 1
# weights: 507
initial value 102.499903
iter 10 value 94.105448
iter 20 value 94.064121
iter 30 value 92.416963
iter 40 value 92.185821
iter 50 value 92.162750
iter 60 value 92.160461
iter 70 value 92.156356
iter 80 value 87.169124
iter 90 value 86.374886
final value 86.372393
converged
Fitting Repeat 2
# weights: 507
initial value 111.713549
iter 10 value 93.863005
iter 20 value 93.854199
iter 30 value 93.565464
iter 40 value 93.540270
iter 50 value 93.414742
iter 60 value 85.551457
iter 70 value 85.155769
iter 80 value 84.913787
iter 90 value 84.885011
iter 100 value 84.690121
final value 84.690121
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 94.813887
iter 10 value 91.358843
iter 20 value 91.324777
iter 30 value 90.788979
iter 40 value 90.728888
iter 50 value 90.724240
final value 90.724108
converged
Fitting Repeat 4
# weights: 507
initial value 103.170115
iter 10 value 94.492185
iter 20 value 94.483571
iter 30 value 88.112878
iter 40 value 88.012540
iter 50 value 87.946252
iter 60 value 85.671004
iter 70 value 83.795674
iter 80 value 82.916862
final value 82.916858
converged
Fitting Repeat 5
# weights: 507
initial value 112.628475
iter 10 value 90.120158
iter 20 value 86.981996
iter 30 value 85.987152
iter 40 value 84.628424
iter 50 value 84.596125
iter 60 value 84.595808
iter 70 value 84.587828
iter 80 value 84.583360
iter 90 value 84.582708
final value 84.582206
converged
Fitting Repeat 1
# weights: 103
initial value 102.112208
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 120.406733
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.535022
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 103.489793
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.905164
iter 10 value 94.031390
final value 94.022599
converged
Fitting Repeat 1
# weights: 305
initial value 94.942329
final value 94.032967
converged
Fitting Repeat 2
# weights: 305
initial value 97.118861
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 96.589109
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 105.106226
final value 94.032967
converged
Fitting Repeat 5
# weights: 305
initial value 100.993017
iter 10 value 92.567210
final value 92.567155
converged
Fitting Repeat 1
# weights: 507
initial value 97.893727
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 97.322882
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 105.785469
iter 10 value 92.703908
iter 10 value 92.703907
iter 10 value 92.703907
final value 92.703907
converged
Fitting Repeat 4
# weights: 507
initial value 102.637982
iter 10 value 94.052883
iter 20 value 94.052268
iter 30 value 89.322352
iter 40 value 87.216768
iter 50 value 87.142238
iter 60 value 84.834660
iter 70 value 84.628871
final value 84.628815
converged
Fitting Repeat 5
# weights: 507
initial value 98.588141
final value 94.044528
converged
Fitting Repeat 1
# weights: 103
initial value 99.476622
iter 10 value 94.057889
iter 20 value 94.056744
iter 30 value 93.546695
iter 40 value 92.693941
iter 50 value 92.485812
iter 60 value 92.275342
iter 70 value 86.640190
iter 80 value 83.547016
iter 90 value 82.840131
iter 100 value 82.472065
final value 82.472065
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.053491
iter 10 value 93.932759
iter 20 value 86.148443
iter 30 value 84.830035
iter 40 value 84.276220
iter 50 value 84.113013
iter 60 value 84.071431
iter 70 value 84.063824
iter 80 value 84.048500
final value 84.048450
converged
Fitting Repeat 3
# weights: 103
initial value 103.664180
iter 10 value 89.014816
iter 20 value 87.667390
iter 30 value 87.367720
iter 40 value 85.237604
iter 50 value 84.936037
iter 60 value 84.850895
iter 70 value 84.821765
final value 84.821753
converged
Fitting Repeat 4
# weights: 103
initial value 99.626549
iter 10 value 94.061080
iter 20 value 92.693694
iter 30 value 85.949143
iter 40 value 85.056872
iter 50 value 84.479099
iter 60 value 84.354934
iter 70 value 83.561864
iter 80 value 83.259786
iter 90 value 81.646046
final value 81.641131
converged
Fitting Repeat 5
# weights: 103
initial value 101.402482
iter 10 value 94.058619
iter 20 value 94.015126
iter 30 value 93.624719
iter 40 value 92.703054
iter 50 value 88.238782
iter 60 value 86.930630
iter 70 value 86.520520
iter 80 value 85.029771
iter 90 value 84.821799
final value 84.821754
converged
Fitting Repeat 1
# weights: 305
initial value 105.923352
iter 10 value 94.214010
iter 20 value 93.461435
iter 30 value 91.775859
iter 40 value 90.186980
iter 50 value 87.876416
iter 60 value 83.317704
iter 70 value 82.151685
iter 80 value 81.981861
iter 90 value 81.884843
iter 100 value 81.744399
final value 81.744399
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.904783
iter 10 value 94.078626
iter 20 value 94.047519
iter 30 value 93.286355
iter 40 value 93.068545
iter 50 value 91.369518
iter 60 value 86.041022
iter 70 value 84.216821
iter 80 value 81.877420
iter 90 value 81.584636
iter 100 value 81.313793
final value 81.313793
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 117.024617
iter 10 value 94.066948
iter 20 value 88.724512
iter 30 value 85.642471
iter 40 value 85.438024
iter 50 value 85.146169
iter 60 value 84.989361
iter 70 value 84.670655
iter 80 value 83.625917
iter 90 value 82.469482
iter 100 value 81.749058
final value 81.749058
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.555541
iter 10 value 94.244429
iter 20 value 94.039575
iter 30 value 93.530633
iter 40 value 92.014233
iter 50 value 88.352698
iter 60 value 85.471863
iter 70 value 85.323282
iter 80 value 83.465327
iter 90 value 83.276883
iter 100 value 83.229706
final value 83.229706
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.054854
iter 10 value 94.063532
iter 20 value 90.300990
iter 30 value 88.543217
iter 40 value 85.073660
iter 50 value 84.361181
iter 60 value 82.376002
iter 70 value 81.608896
iter 80 value 81.511241
iter 90 value 81.174368
iter 100 value 80.687611
final value 80.687611
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.365610
iter 10 value 94.287479
iter 20 value 93.422544
iter 30 value 86.560997
iter 40 value 85.863351
iter 50 value 83.580944
iter 60 value 81.664197
iter 70 value 80.588112
iter 80 value 80.274633
iter 90 value 80.163896
iter 100 value 79.770939
final value 79.770939
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.064123
iter 10 value 95.482046
iter 20 value 88.186132
iter 30 value 87.243306
iter 40 value 83.317603
iter 50 value 81.635977
iter 60 value 81.216969
iter 70 value 80.288899
iter 80 value 79.999414
iter 90 value 79.840048
iter 100 value 79.734787
final value 79.734787
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.018193
iter 10 value 88.297880
iter 20 value 84.048740
iter 30 value 81.861890
iter 40 value 81.141644
iter 50 value 80.888058
iter 60 value 80.716854
iter 70 value 80.394820
iter 80 value 80.226750
iter 90 value 79.933567
iter 100 value 79.714535
final value 79.714535
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.581068
iter 10 value 94.063901
iter 20 value 93.534689
iter 30 value 93.104366
iter 40 value 93.055683
iter 50 value 92.991409
iter 60 value 85.567979
iter 70 value 82.914684
iter 80 value 81.124659
iter 90 value 80.222762
iter 100 value 79.964033
final value 79.964033
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 124.369094
iter 10 value 94.202176
iter 20 value 85.817306
iter 30 value 85.498661
iter 40 value 84.761379
iter 50 value 82.157482
iter 60 value 80.587450
iter 70 value 80.472860
iter 80 value 80.339011
iter 90 value 80.114247
iter 100 value 80.043712
final value 80.043712
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.889989
final value 94.034575
converged
Fitting Repeat 2
# weights: 103
initial value 95.389765
iter 10 value 94.054799
final value 94.052927
converged
Fitting Repeat 3
# weights: 103
initial value 98.549518
iter 10 value 94.054738
iter 20 value 94.052968
iter 30 value 89.228176
iter 40 value 86.333879
iter 50 value 86.162768
iter 60 value 86.144890
iter 60 value 86.144890
iter 60 value 86.144890
final value 86.144890
converged
Fitting Repeat 4
# weights: 103
initial value 95.520764
final value 94.054484
converged
Fitting Repeat 5
# weights: 103
initial value 102.286311
final value 94.054523
converged
Fitting Repeat 1
# weights: 305
initial value 100.930814
iter 10 value 92.343548
iter 20 value 92.305212
iter 30 value 92.267036
iter 40 value 92.265742
iter 50 value 89.470749
iter 60 value 85.207624
iter 70 value 83.961825
iter 80 value 83.347480
iter 90 value 83.099333
iter 100 value 82.848973
final value 82.848973
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.863800
iter 10 value 94.057739
iter 20 value 91.169257
iter 30 value 84.977511
iter 40 value 84.699898
iter 50 value 84.699293
iter 50 value 84.699293
final value 84.699293
converged
Fitting Repeat 3
# weights: 305
initial value 104.744945
iter 10 value 94.057319
iter 20 value 93.722433
iter 30 value 93.175797
iter 40 value 92.264148
iter 50 value 92.261632
iter 60 value 92.187098
iter 70 value 90.997615
iter 80 value 85.274843
iter 90 value 85.181739
iter 100 value 85.179005
final value 85.179005
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.172680
iter 10 value 94.055016
iter 20 value 94.033525
iter 30 value 94.005666
final value 94.005606
converged
Fitting Repeat 5
# weights: 305
initial value 100.126908
iter 10 value 94.058281
iter 20 value 94.052835
iter 30 value 93.934939
iter 40 value 92.090873
iter 50 value 86.411938
iter 60 value 85.905308
iter 70 value 85.632565
iter 80 value 83.536904
iter 90 value 83.269605
iter 100 value 83.245430
final value 83.245430
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.468553
iter 10 value 87.249867
iter 20 value 86.069484
iter 30 value 86.056460
iter 40 value 86.052473
iter 50 value 86.023533
iter 60 value 83.924299
iter 70 value 82.921552
iter 80 value 82.384917
iter 90 value 82.363491
iter 100 value 82.361205
final value 82.361205
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 99.769914
iter 10 value 94.060792
iter 20 value 93.734718
iter 30 value 85.428742
iter 40 value 81.875126
iter 50 value 81.161144
iter 60 value 78.509113
iter 70 value 78.156342
iter 80 value 77.804683
iter 90 value 77.793447
final value 77.792971
converged
Fitting Repeat 3
# weights: 507
initial value 96.914526
iter 10 value 92.736363
iter 20 value 92.263814
iter 30 value 92.260340
iter 40 value 92.258035
iter 50 value 92.102282
iter 60 value 89.525326
iter 70 value 85.345893
iter 80 value 83.668111
iter 90 value 82.579611
iter 100 value 81.510629
final value 81.510629
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 100.795879
iter 10 value 94.059352
iter 20 value 93.590098
iter 30 value 88.464478
iter 40 value 85.735941
iter 50 value 83.296494
iter 60 value 82.440603
iter 70 value 81.300339
iter 80 value 80.632715
iter 90 value 79.458122
iter 100 value 79.430018
final value 79.430018
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 99.369975
iter 10 value 94.060847
iter 20 value 93.995622
iter 30 value 92.573145
iter 40 value 92.241602
iter 50 value 91.434801
iter 60 value 88.336063
iter 70 value 88.286044
iter 80 value 88.285030
iter 90 value 88.283712
iter 100 value 87.762135
final value 87.762135
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 134.005453
iter 10 value 117.952846
iter 20 value 106.301274
iter 30 value 105.926334
iter 40 value 105.468659
iter 50 value 105.153793
iter 60 value 103.771911
iter 70 value 102.786537
iter 80 value 102.598588
iter 90 value 102.174113
iter 100 value 101.642740
final value 101.642740
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 152.757589
iter 10 value 118.080741
iter 20 value 114.782778
iter 30 value 108.024307
iter 40 value 106.817343
iter 50 value 104.601279
iter 60 value 103.385178
iter 70 value 101.644562
iter 80 value 100.377638
iter 90 value 100.202751
iter 100 value 100.147014
final value 100.147014
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 131.349426
iter 10 value 119.008823
iter 20 value 110.409491
iter 30 value 109.005613
iter 40 value 108.365760
iter 50 value 107.594110
iter 60 value 107.151816
iter 70 value 103.867639
iter 80 value 103.110389
iter 90 value 102.059736
iter 100 value 101.563575
final value 101.563575
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 147.471658
iter 10 value 116.563063
iter 20 value 107.977013
iter 30 value 106.198854
iter 40 value 105.318544
iter 50 value 103.730287
iter 60 value 102.797376
iter 70 value 102.381523
iter 80 value 102.239411
iter 90 value 102.004626
iter 100 value 101.616517
final value 101.616517
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.080465
iter 10 value 114.483939
iter 20 value 111.017562
iter 30 value 106.924117
iter 40 value 104.900083
iter 50 value 102.966202
iter 60 value 102.458132
iter 70 value 101.873329
iter 80 value 101.296496
iter 90 value 101.031827
iter 100 value 100.994958
final value 100.994958
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Mar 11 19:10:29 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
20.128 0.502 77.562
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 17.561 | 0.898 | 19.335 | |
| FreqInteractors | 0.166 | 0.011 | 0.179 | |
| calculateAAC | 0.013 | 0.003 | 0.016 | |
| calculateAutocor | 0.136 | 0.027 | 0.171 | |
| calculateCTDC | 0.027 | 0.002 | 0.032 | |
| calculateCTDD | 0.166 | 0.013 | 0.180 | |
| calculateCTDT | 0.061 | 0.007 | 0.068 | |
| calculateCTriad | 0.160 | 0.015 | 0.176 | |
| calculateDC | 0.033 | 0.004 | 0.038 | |
| calculateF | 0.106 | 0.003 | 0.119 | |
| calculateKSAAP | 0.038 | 0.004 | 0.042 | |
| calculateQD_Sm | 0.723 | 0.063 | 0.811 | |
| calculateTC | 0.626 | 0.064 | 0.730 | |
| calculateTC_Sm | 0.112 | 0.010 | 0.131 | |
| corr_plot | 18.244 | 0.981 | 20.392 | |
| enrichfindP | 0.203 | 0.038 | 10.930 | |
| enrichfind_hp | 0.017 | 0.002 | 0.844 | |
| enrichplot | 0.182 | 0.011 | 0.212 | |
| filter_missing_values | 0.001 | 0.000 | 0.000 | |
| getFASTA | 0.031 | 0.008 | 3.430 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.000 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.001 | |
| plotPPI | 0.030 | 0.001 | 0.038 | |
| pred_ensembel | 6.653 | 0.170 | 6.728 | |
| var_imp | 18.100 | 1.083 | 20.695 | |