| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-14 11:34 -0400 (Sat, 14 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4837 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4050 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1009/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-14 00:26:01 -0400 (Sat, 14 Mar 2026) |
| EndedAt: 2026-03-14 00:41:06 -0400 (Sat, 14 Mar 2026) |
| EllapsedTime: 905.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-14 04:26:01 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 35.660 0.645 36.332
corr_plot 34.976 0.462 35.484
FSmethod 33.452 0.640 34.126
pred_ensembel 13.158 0.312 12.147
enrichfindP 0.529 0.050 11.546
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 113.629573
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 109.407832
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.766616
final value 94.050051
converged
Fitting Repeat 4
# weights: 103
initial value 94.282245
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 101.562715
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 102.436560
final value 93.915746
converged
Fitting Repeat 2
# weights: 305
initial value 113.471556
iter 10 value 93.697116
iter 20 value 93.688290
final value 93.687996
converged
Fitting Repeat 3
# weights: 305
initial value 97.132697
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 95.188722
final value 93.371808
converged
Fitting Repeat 5
# weights: 305
initial value 99.409090
iter 10 value 93.371782
iter 20 value 92.740832
iter 30 value 92.735651
final value 92.735634
converged
Fitting Repeat 1
# weights: 507
initial value 95.984728
iter 10 value 93.697415
iter 20 value 93.697146
final value 93.697144
converged
Fitting Repeat 2
# weights: 507
initial value 96.365007
final value 94.050051
converged
Fitting Repeat 3
# weights: 507
initial value 137.666010
final value 94.050051
converged
Fitting Repeat 4
# weights: 507
initial value 95.202736
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 101.826835
iter 10 value 93.915746
iter 10 value 93.915746
iter 10 value 93.915746
final value 93.915746
converged
Fitting Repeat 1
# weights: 103
initial value 99.458138
iter 10 value 94.051957
iter 20 value 93.981796
iter 30 value 93.946442
iter 40 value 93.750875
iter 50 value 87.370721
iter 60 value 83.304845
iter 70 value 82.318565
iter 80 value 81.715815
iter 90 value 81.590310
iter 100 value 81.467854
final value 81.467854
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 105.653089
iter 10 value 93.458377
iter 20 value 90.523562
iter 30 value 87.105711
iter 40 value 86.216155
iter 50 value 85.638835
iter 60 value 85.008617
iter 70 value 83.813267
iter 80 value 83.787301
iter 90 value 83.780241
final value 83.780213
converged
Fitting Repeat 3
# weights: 103
initial value 101.042852
iter 10 value 94.048174
iter 20 value 93.779438
iter 30 value 93.415023
iter 40 value 93.376443
iter 50 value 88.207676
iter 60 value 83.822489
iter 70 value 83.170194
iter 80 value 82.915281
iter 90 value 82.740026
iter 100 value 82.719599
final value 82.719599
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.699706
iter 10 value 94.037432
iter 20 value 89.437554
iter 30 value 85.434424
iter 40 value 83.533356
iter 50 value 82.707635
iter 60 value 82.393980
iter 70 value 81.978885
iter 80 value 81.514827
iter 90 value 81.359778
iter 100 value 81.270465
final value 81.270465
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.743510
iter 10 value 94.033815
iter 20 value 87.874553
iter 30 value 86.328122
iter 40 value 85.443099
iter 50 value 81.847420
iter 60 value 81.605196
iter 70 value 81.563134
iter 80 value 81.428077
iter 90 value 81.261757
iter 100 value 81.232991
final value 81.232991
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.628447
iter 10 value 95.023455
iter 20 value 94.138118
iter 30 value 94.019947
iter 40 value 91.951463
iter 50 value 88.289720
iter 60 value 85.146963
iter 70 value 84.345092
iter 80 value 83.629979
iter 90 value 81.550645
iter 100 value 80.818742
final value 80.818742
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.997300
iter 10 value 94.454417
iter 20 value 88.474147
iter 30 value 86.298775
iter 40 value 85.276501
iter 50 value 84.466383
iter 60 value 84.325090
iter 70 value 83.880588
iter 80 value 83.780432
iter 90 value 83.778603
iter 100 value 83.674237
final value 83.674237
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.381603
iter 10 value 94.050296
iter 20 value 87.891026
iter 30 value 83.827931
iter 40 value 83.773932
iter 50 value 82.418158
iter 60 value 81.873515
iter 70 value 81.641489
iter 80 value 81.141943
iter 90 value 80.569866
iter 100 value 80.439915
final value 80.439915
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.380440
iter 10 value 94.093977
iter 20 value 92.526475
iter 30 value 88.226639
iter 40 value 82.814568
iter 50 value 80.907679
iter 60 value 80.593427
iter 70 value 80.517231
iter 80 value 80.488652
iter 90 value 80.467582
iter 100 value 80.461493
final value 80.461493
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.947032
iter 10 value 94.017641
iter 20 value 93.368888
iter 30 value 86.820386
iter 40 value 85.065880
iter 50 value 84.165123
iter 60 value 83.388219
iter 70 value 82.248959
iter 80 value 81.198139
iter 90 value 80.484691
iter 100 value 80.311018
final value 80.311018
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.148543
iter 10 value 92.517040
iter 20 value 88.766006
iter 30 value 83.809013
iter 40 value 83.616381
iter 50 value 83.486734
iter 60 value 83.441284
iter 70 value 82.955085
iter 80 value 81.875580
iter 90 value 81.330000
iter 100 value 81.136716
final value 81.136716
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 124.963561
iter 10 value 93.668341
iter 20 value 86.314455
iter 30 value 82.783372
iter 40 value 81.354743
iter 50 value 80.664964
iter 60 value 80.520581
iter 70 value 80.290809
iter 80 value 80.120718
iter 90 value 80.050741
iter 100 value 80.033538
final value 80.033538
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.379610
iter 10 value 94.427627
iter 20 value 93.335024
iter 30 value 91.748722
iter 40 value 84.876183
iter 50 value 84.122462
iter 60 value 83.486226
iter 70 value 83.215999
iter 80 value 82.745733
iter 90 value 80.724703
iter 100 value 79.813818
final value 79.813818
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.996609
iter 10 value 94.263047
iter 20 value 93.881105
iter 30 value 92.854846
iter 40 value 86.162398
iter 50 value 83.032993
iter 60 value 82.613982
iter 70 value 82.171208
iter 80 value 81.274985
iter 90 value 80.978911
iter 100 value 80.095789
final value 80.095789
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.866291
iter 10 value 95.431396
iter 20 value 92.159375
iter 30 value 87.780507
iter 40 value 85.524823
iter 50 value 83.201225
iter 60 value 81.982835
iter 70 value 81.096669
iter 80 value 80.821266
iter 90 value 80.613402
iter 100 value 80.348414
final value 80.348414
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.050530
final value 93.917511
converged
Fitting Repeat 2
# weights: 103
initial value 100.900223
final value 94.054635
converged
Fitting Repeat 3
# weights: 103
initial value 102.058791
final value 94.054534
converged
Fitting Repeat 4
# weights: 103
initial value 98.830427
final value 94.054610
converged
Fitting Repeat 5
# weights: 103
initial value 94.107022
final value 94.054563
converged
Fitting Repeat 1
# weights: 305
initial value 121.857734
iter 10 value 94.058158
iter 20 value 94.030081
iter 30 value 92.015365
iter 40 value 91.503406
iter 50 value 91.503085
iter 60 value 91.502925
iter 70 value 87.530052
iter 80 value 85.069632
iter 90 value 84.414199
iter 100 value 84.400427
final value 84.400427
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 94.847816
iter 10 value 86.558546
iter 20 value 84.280111
iter 30 value 84.196858
iter 40 value 83.953454
iter 50 value 83.162618
iter 60 value 82.837821
iter 70 value 82.834380
iter 80 value 82.833798
iter 90 value 82.370197
iter 100 value 81.694907
final value 81.694907
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.238188
iter 10 value 94.055229
iter 20 value 94.045077
iter 30 value 90.947046
iter 40 value 90.734864
iter 50 value 90.733813
final value 90.733805
converged
Fitting Repeat 4
# weights: 305
initial value 104.920482
iter 10 value 94.057382
iter 20 value 94.034652
iter 30 value 92.088438
iter 40 value 85.788185
iter 50 value 85.695663
iter 60 value 85.676664
iter 70 value 85.675038
iter 80 value 83.618798
iter 90 value 83.444657
iter 100 value 81.529233
final value 81.529233
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 122.681135
iter 10 value 94.057472
iter 20 value 93.981585
iter 30 value 85.315048
iter 40 value 82.879397
iter 50 value 81.950784
iter 60 value 80.417404
iter 70 value 80.061498
iter 80 value 79.737007
iter 90 value 79.735857
final value 79.735825
converged
Fitting Repeat 1
# weights: 507
initial value 100.922072
iter 10 value 93.923470
iter 20 value 93.580483
iter 30 value 93.570648
final value 93.570540
converged
Fitting Repeat 2
# weights: 507
initial value 117.491028
iter 10 value 87.421365
iter 20 value 85.529157
iter 30 value 85.524251
iter 40 value 85.518795
iter 50 value 85.126506
iter 60 value 82.438127
iter 70 value 82.375167
iter 80 value 82.094554
iter 90 value 80.558278
iter 100 value 79.295748
final value 79.295748
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.389787
iter 10 value 91.001737
iter 20 value 89.990582
iter 30 value 89.974215
iter 40 value 89.973337
iter 50 value 86.992825
iter 60 value 86.048071
iter 70 value 85.884956
iter 80 value 85.734875
iter 90 value 85.508135
final value 85.507581
converged
Fitting Repeat 4
# weights: 507
initial value 106.469372
iter 10 value 94.060959
iter 20 value 90.429005
iter 30 value 87.059194
iter 40 value 84.614482
iter 50 value 84.554257
iter 60 value 84.314708
iter 70 value 84.312554
iter 80 value 84.259848
iter 90 value 83.915034
iter 100 value 83.811773
final value 83.811773
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.210839
iter 10 value 93.924332
iter 20 value 93.919037
iter 30 value 93.917475
iter 40 value 93.912049
iter 50 value 92.606702
iter 60 value 87.534375
iter 70 value 87.532017
iter 80 value 87.530431
iter 90 value 87.505601
iter 100 value 85.827012
final value 85.827012
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.482475
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 96.331486
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.247366
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 94.552307
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 95.292519
final value 94.033149
converged
Fitting Repeat 1
# weights: 305
initial value 105.438147
final value 94.052904
converged
Fitting Repeat 2
# weights: 305
initial value 94.468806
final value 94.008696
converged
Fitting Repeat 3
# weights: 305
initial value 99.352477
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 105.345821
iter 10 value 92.034212
final value 92.034056
converged
Fitting Repeat 5
# weights: 305
initial value 102.900085
final value 94.052911
converged
Fitting Repeat 1
# weights: 507
initial value 100.019592
iter 10 value 93.994012
iter 10 value 93.994012
iter 10 value 93.994012
final value 93.994012
converged
Fitting Repeat 2
# weights: 507
initial value 108.545889
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 130.339878
iter 10 value 94.052910
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 102.429051
iter 10 value 92.929795
iter 20 value 88.107700
iter 30 value 88.094418
final value 88.024699
converged
Fitting Repeat 5
# weights: 507
initial value 108.986286
final value 94.017143
converged
Fitting Repeat 1
# weights: 103
initial value 95.711964
iter 10 value 92.320154
iter 20 value 92.079155
iter 30 value 91.660682
iter 40 value 91.528105
iter 50 value 90.975114
iter 60 value 90.922819
iter 70 value 90.922313
final value 90.922310
converged
Fitting Repeat 2
# weights: 103
initial value 103.844253
iter 10 value 94.056715
iter 20 value 92.181511
iter 30 value 86.237626
iter 40 value 84.996915
iter 50 value 84.596883
iter 60 value 84.073893
final value 84.067342
converged
Fitting Repeat 3
# weights: 103
initial value 103.990907
iter 10 value 94.058331
iter 20 value 94.056654
iter 30 value 86.118435
iter 40 value 85.047702
iter 50 value 84.968524
iter 60 value 83.963554
iter 70 value 83.552779
iter 80 value 83.414371
iter 90 value 83.389407
final value 83.385077
converged
Fitting Repeat 4
# weights: 103
initial value 100.521802
iter 10 value 93.528764
iter 20 value 91.639168
iter 30 value 91.230675
iter 40 value 91.059127
iter 50 value 91.045043
final value 91.045013
converged
Fitting Repeat 5
# weights: 103
initial value 109.998440
iter 10 value 93.735075
iter 20 value 90.050161
iter 30 value 87.012862
iter 40 value 86.654344
iter 50 value 86.029216
iter 60 value 84.177439
iter 70 value 83.393416
iter 80 value 82.571946
iter 90 value 81.877853
iter 100 value 81.653278
final value 81.653278
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 106.518053
iter 10 value 94.878210
iter 20 value 93.599353
iter 30 value 89.012909
iter 40 value 85.867004
iter 50 value 84.711777
iter 60 value 84.546904
iter 70 value 84.357713
iter 80 value 82.540931
iter 90 value 81.952292
iter 100 value 81.739616
final value 81.739616
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.989526
iter 10 value 93.044746
iter 20 value 88.726056
iter 30 value 85.875603
iter 40 value 84.016048
iter 50 value 83.934535
iter 60 value 83.841951
iter 70 value 83.816801
iter 80 value 83.776500
iter 90 value 83.698448
iter 100 value 83.632808
final value 83.632808
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.361288
iter 10 value 94.058543
iter 20 value 90.948843
iter 30 value 85.865152
iter 40 value 83.006699
iter 50 value 82.500080
iter 60 value 81.976931
iter 70 value 81.308247
iter 80 value 80.605064
iter 90 value 80.269113
iter 100 value 80.166727
final value 80.166727
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.299285
iter 10 value 93.843332
iter 20 value 85.562421
iter 30 value 85.058076
iter 40 value 84.934599
iter 50 value 84.849163
iter 60 value 83.528914
iter 70 value 81.743148
iter 80 value 81.451859
iter 90 value 81.327772
iter 100 value 81.283155
final value 81.283155
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.823508
iter 10 value 94.093494
iter 20 value 92.520181
iter 30 value 88.552102
iter 40 value 84.343118
iter 50 value 83.819710
iter 60 value 83.340046
iter 70 value 82.487685
iter 80 value 81.646927
iter 90 value 81.337858
iter 100 value 80.898794
final value 80.898794
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 126.216733
iter 10 value 94.205781
iter 20 value 94.104688
iter 30 value 91.518031
iter 40 value 90.472912
iter 50 value 89.943345
iter 60 value 87.789118
iter 70 value 83.439002
iter 80 value 82.647459
iter 90 value 82.287802
iter 100 value 81.938189
final value 81.938189
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.133426
iter 10 value 94.065752
iter 20 value 90.000312
iter 30 value 87.056510
iter 40 value 83.443931
iter 50 value 82.924532
iter 60 value 82.334076
iter 70 value 81.392246
iter 80 value 81.132089
iter 90 value 80.941127
iter 100 value 80.722229
final value 80.722229
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 125.066053
iter 10 value 94.483876
iter 20 value 90.998835
iter 30 value 89.774216
iter 40 value 89.471456
iter 50 value 86.251302
iter 60 value 82.547299
iter 70 value 82.262323
iter 80 value 81.401534
iter 90 value 81.199783
iter 100 value 81.044074
final value 81.044074
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.954634
iter 10 value 93.391805
iter 20 value 86.100932
iter 30 value 85.490277
iter 40 value 84.813677
iter 50 value 84.495644
iter 60 value 83.809522
iter 70 value 83.485445
iter 80 value 83.282832
iter 90 value 83.069079
iter 100 value 81.862777
final value 81.862777
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.162565
iter 10 value 93.001530
iter 20 value 89.240735
iter 30 value 87.596197
iter 40 value 84.681710
iter 50 value 83.544829
iter 60 value 81.919006
iter 70 value 81.335226
iter 80 value 80.987661
iter 90 value 80.852694
iter 100 value 80.759126
final value 80.759126
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 107.319367
final value 94.054578
converged
Fitting Repeat 2
# weights: 103
initial value 101.371459
final value 94.054439
converged
Fitting Repeat 3
# weights: 103
initial value 102.609881
final value 94.054573
converged
Fitting Repeat 4
# weights: 103
initial value 101.598724
final value 94.054778
converged
Fitting Repeat 5
# weights: 103
initial value 118.513123
final value 94.054625
converged
Fitting Repeat 1
# weights: 305
initial value 97.868361
iter 10 value 94.058269
iter 20 value 93.914509
iter 30 value 85.634077
iter 40 value 84.088571
iter 50 value 83.838884
iter 60 value 83.552426
iter 70 value 82.412715
iter 80 value 82.377784
iter 90 value 82.372012
iter 100 value 82.304902
final value 82.304902
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.157927
iter 10 value 94.056534
iter 20 value 92.921065
iter 30 value 86.826489
iter 40 value 86.775854
iter 50 value 86.775615
iter 60 value 86.432573
iter 70 value 86.388689
final value 86.387938
converged
Fitting Repeat 3
# weights: 305
initial value 98.695090
iter 10 value 94.057081
iter 20 value 91.386258
iter 30 value 91.252036
final value 91.251876
converged
Fitting Repeat 4
# weights: 305
initial value 105.634219
iter 10 value 94.057808
iter 20 value 93.908243
iter 30 value 86.933603
final value 86.796406
converged
Fitting Repeat 5
# weights: 305
initial value 117.427690
iter 10 value 94.013529
iter 20 value 93.914565
iter 30 value 93.735284
iter 40 value 92.235506
iter 50 value 92.174467
iter 60 value 92.174221
final value 92.173865
converged
Fitting Repeat 1
# weights: 507
initial value 108.956221
iter 10 value 94.026094
iter 20 value 87.926431
iter 30 value 85.681037
iter 40 value 84.462093
iter 50 value 84.367570
iter 60 value 84.332367
iter 70 value 84.249716
iter 80 value 84.123722
iter 90 value 84.119710
iter 100 value 83.438741
final value 83.438741
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.512869
iter 10 value 94.061602
iter 20 value 93.275385
iter 30 value 84.899872
iter 40 value 84.039401
final value 84.038929
converged
Fitting Repeat 3
# weights: 507
initial value 112.151244
iter 10 value 94.060888
iter 20 value 91.955794
iter 30 value 91.616146
iter 40 value 91.615907
iter 50 value 91.147623
iter 60 value 91.143462
final value 91.143433
converged
Fitting Repeat 4
# weights: 507
initial value 114.497455
iter 10 value 94.024969
iter 20 value 92.890287
iter 30 value 91.838936
iter 40 value 91.441643
iter 50 value 91.437484
iter 60 value 91.428955
iter 70 value 91.428736
iter 80 value 91.426890
iter 90 value 91.425820
iter 100 value 91.425071
final value 91.425071
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.998332
iter 10 value 94.017093
iter 20 value 94.009485
final value 94.008951
converged
Fitting Repeat 1
# weights: 103
initial value 105.959635
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.054612
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.242636
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.130480
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.386237
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.067177
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 100.644098
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 98.249182
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 96.658766
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 106.575845
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 107.999891
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 110.483987
final value 93.320225
converged
Fitting Repeat 3
# weights: 507
initial value 104.208173
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 115.233320
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 101.783833
final value 94.026542
converged
Fitting Repeat 1
# weights: 103
initial value 99.805698
iter 10 value 94.488615
iter 10 value 94.488615
iter 20 value 94.386411
iter 30 value 89.168025
iter 40 value 88.437404
iter 50 value 88.167862
iter 60 value 87.499882
iter 70 value 86.198610
iter 80 value 84.775368
iter 90 value 84.253693
iter 100 value 83.983756
final value 83.983756
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.540814
iter 10 value 94.488831
iter 20 value 94.127294
iter 30 value 93.021778
iter 40 value 88.240103
iter 50 value 87.746576
iter 60 value 87.388882
iter 70 value 84.873352
iter 80 value 84.782265
iter 90 value 84.615720
iter 100 value 83.981472
final value 83.981472
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 114.364575
iter 10 value 94.486554
iter 20 value 94.275792
iter 30 value 93.653002
iter 40 value 93.451933
iter 50 value 93.170970
iter 60 value 88.904967
iter 70 value 87.680315
iter 80 value 87.266840
final value 87.252415
converged
Fitting Repeat 4
# weights: 103
initial value 96.101207
iter 10 value 93.453526
iter 20 value 92.134416
iter 30 value 90.209798
iter 40 value 89.517463
iter 50 value 85.311762
iter 60 value 84.291745
iter 70 value 83.977392
iter 80 value 83.902943
final value 83.902941
converged
Fitting Repeat 5
# weights: 103
initial value 101.394807
iter 10 value 93.694342
iter 20 value 93.163510
iter 30 value 88.897577
iter 40 value 88.433141
iter 50 value 88.201215
iter 60 value 88.181764
iter 70 value 87.211143
iter 80 value 86.830818
final value 86.830123
converged
Fitting Repeat 1
# weights: 305
initial value 105.228425
iter 10 value 94.663343
iter 20 value 91.021276
iter 30 value 87.937796
iter 40 value 87.105297
iter 50 value 85.034964
iter 60 value 84.532536
iter 70 value 84.289897
iter 80 value 84.226998
iter 90 value 84.092177
iter 100 value 83.769940
final value 83.769940
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.921215
iter 10 value 94.028885
iter 20 value 89.111438
iter 30 value 88.364334
iter 40 value 88.032722
iter 50 value 87.430512
iter 60 value 86.590728
iter 70 value 86.078990
iter 80 value 84.828509
iter 90 value 84.337383
iter 100 value 84.215004
final value 84.215004
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.823595
iter 10 value 95.014525
iter 20 value 94.567400
iter 30 value 93.546255
iter 40 value 88.244389
iter 50 value 87.856460
iter 60 value 87.060099
iter 70 value 86.231780
iter 80 value 86.191364
iter 90 value 86.085941
iter 100 value 85.755138
final value 85.755138
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 126.160124
iter 10 value 94.506558
iter 20 value 93.938260
iter 30 value 91.426398
iter 40 value 86.273368
iter 50 value 85.780272
iter 60 value 84.256711
iter 70 value 83.677097
iter 80 value 83.269806
iter 90 value 83.085980
iter 100 value 82.991010
final value 82.991010
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.574415
iter 10 value 94.555197
iter 20 value 94.379281
iter 30 value 93.581981
iter 40 value 89.772367
iter 50 value 85.736854
iter 60 value 83.692857
iter 70 value 83.179084
iter 80 value 82.943021
iter 90 value 82.850611
iter 100 value 82.719670
final value 82.719670
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.581143
iter 10 value 94.408144
iter 20 value 88.811041
iter 30 value 87.247195
iter 40 value 85.505252
iter 50 value 84.123371
iter 60 value 83.701226
iter 70 value 83.180906
iter 80 value 83.087711
iter 90 value 82.831090
iter 100 value 82.802870
final value 82.802870
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.145154
iter 10 value 94.064385
iter 20 value 88.282372
iter 30 value 85.740613
iter 40 value 84.271567
iter 50 value 83.963517
iter 60 value 83.677634
iter 70 value 82.917505
iter 80 value 82.682346
iter 90 value 82.552604
iter 100 value 82.507234
final value 82.507234
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 126.602057
iter 10 value 94.784012
iter 20 value 93.276223
iter 30 value 88.371389
iter 40 value 88.052210
iter 50 value 87.023342
iter 60 value 86.801106
iter 70 value 86.531208
iter 80 value 86.052229
iter 90 value 84.658624
iter 100 value 83.593777
final value 83.593777
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.268321
iter 10 value 93.921144
iter 20 value 89.342319
iter 30 value 85.963384
iter 40 value 85.065675
iter 50 value 84.812890
iter 60 value 84.559227
iter 70 value 84.364958
iter 80 value 83.852409
iter 90 value 83.173161
iter 100 value 82.858445
final value 82.858445
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 148.791193
iter 10 value 100.645933
iter 20 value 99.109500
iter 30 value 94.533953
iter 40 value 94.251097
iter 50 value 94.125710
iter 60 value 92.408845
iter 70 value 88.693430
iter 80 value 87.791120
iter 90 value 85.807094
iter 100 value 85.360373
final value 85.360373
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.954076
final value 94.485779
converged
Fitting Repeat 2
# weights: 103
initial value 100.090565
iter 10 value 94.485759
iter 20 value 93.914804
iter 30 value 87.486990
iter 40 value 86.030471
iter 50 value 85.989482
iter 60 value 85.988925
iter 70 value 85.958552
iter 80 value 85.953522
final value 85.953407
converged
Fitting Repeat 3
# weights: 103
initial value 96.629563
final value 94.485901
converged
Fitting Repeat 4
# weights: 103
initial value 101.649448
final value 94.485952
converged
Fitting Repeat 5
# weights: 103
initial value 95.667132
final value 94.485981
converged
Fitting Repeat 1
# weights: 305
initial value 100.953091
iter 10 value 93.958729
iter 20 value 93.863570
iter 30 value 91.859885
iter 40 value 87.111897
iter 50 value 86.482238
iter 60 value 86.412929
iter 70 value 85.148191
iter 80 value 82.625746
iter 90 value 81.959319
iter 100 value 81.769062
final value 81.769062
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.004608
iter 10 value 94.488627
iter 20 value 94.123642
iter 30 value 93.527481
iter 40 value 93.496328
final value 93.489411
converged
Fitting Repeat 3
# weights: 305
initial value 113.218216
iter 10 value 93.400173
iter 20 value 93.325759
iter 30 value 93.320938
iter 40 value 93.239885
iter 50 value 93.189700
iter 60 value 91.157007
iter 70 value 87.592769
iter 80 value 85.037077
iter 90 value 84.577103
iter 100 value 84.490127
final value 84.490127
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 94.890817
iter 10 value 94.488920
iter 20 value 94.474549
iter 30 value 93.387005
iter 40 value 91.912176
iter 50 value 85.978503
iter 60 value 84.480086
iter 70 value 82.761404
iter 80 value 82.250915
iter 90 value 81.709606
iter 100 value 81.636905
final value 81.636905
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.937434
iter 10 value 94.489414
iter 20 value 94.412091
iter 30 value 91.122112
iter 40 value 85.667404
iter 50 value 85.652160
iter 60 value 85.585544
iter 70 value 85.578334
final value 85.578302
converged
Fitting Repeat 1
# weights: 507
initial value 111.696216
iter 10 value 94.035825
iter 20 value 94.028891
iter 30 value 93.019709
iter 40 value 88.897236
iter 50 value 87.944307
iter 60 value 87.941583
iter 70 value 87.927178
iter 80 value 87.919615
iter 90 value 87.716330
iter 100 value 86.735882
final value 86.735882
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.864678
iter 10 value 94.403002
iter 20 value 92.746322
iter 30 value 91.840840
iter 40 value 91.795313
final value 91.792296
converged
Fitting Repeat 3
# weights: 507
initial value 109.108048
iter 10 value 93.374026
iter 20 value 93.300965
iter 30 value 93.300415
iter 40 value 92.367458
iter 50 value 91.005434
iter 60 value 85.007271
iter 70 value 84.004780
iter 80 value 83.765049
iter 90 value 83.581618
iter 100 value 83.444169
final value 83.444169
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.203826
iter 10 value 93.328315
iter 20 value 93.266365
iter 30 value 93.181953
iter 40 value 87.892950
iter 50 value 87.459922
iter 60 value 87.457618
final value 87.456857
converged
Fitting Repeat 5
# weights: 507
initial value 98.475151
iter 10 value 94.491453
iter 20 value 94.473103
iter 30 value 91.581870
iter 40 value 88.715993
iter 50 value 88.305220
iter 60 value 88.301925
iter 70 value 88.293236
final value 88.293156
converged
Fitting Repeat 1
# weights: 103
initial value 98.981032
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.992643
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 111.658711
iter 10 value 92.676052
iter 20 value 92.468386
iter 30 value 90.150378
iter 40 value 90.130660
final value 90.130615
converged
Fitting Repeat 4
# weights: 103
initial value 95.500431
final value 94.484210
converged
Fitting Repeat 5
# weights: 103
initial value 95.507171
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 99.075499
final value 94.484210
converged
Fitting Repeat 2
# weights: 305
initial value 117.103888
final value 94.105263
converged
Fitting Repeat 3
# weights: 305
initial value 94.402804
iter 10 value 84.629369
iter 20 value 83.851904
iter 30 value 81.773239
iter 40 value 81.265735
iter 50 value 81.262695
final value 81.262629
converged
Fitting Repeat 4
# weights: 305
initial value 109.366845
iter 10 value 94.332829
final value 94.275362
converged
Fitting Repeat 5
# weights: 305
initial value 101.926770
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 125.316545
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 104.812083
final value 93.874609
converged
Fitting Repeat 3
# weights: 507
initial value 103.724134
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 110.696498
final value 94.275362
converged
Fitting Repeat 5
# weights: 507
initial value 99.839570
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 102.479255
iter 10 value 86.301980
iter 20 value 84.924711
iter 30 value 82.711313
iter 40 value 82.625275
iter 50 value 82.575727
iter 60 value 82.254549
iter 70 value 82.150897
iter 80 value 81.821502
iter 90 value 81.581199
final value 81.580130
converged
Fitting Repeat 2
# weights: 103
initial value 102.708738
iter 10 value 94.354424
iter 20 value 90.032195
iter 30 value 89.442679
iter 40 value 85.565576
iter 50 value 83.653286
iter 60 value 83.290145
iter 70 value 83.179400
iter 80 value 83.153248
iter 90 value 83.128661
iter 100 value 80.482646
final value 80.482646
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 130.074530
iter 10 value 94.284859
iter 20 value 83.774724
iter 30 value 82.429068
iter 40 value 82.408244
iter 50 value 82.077796
iter 60 value 81.957814
iter 70 value 81.610217
iter 80 value 81.592147
final value 81.591657
converged
Fitting Repeat 4
# weights: 103
initial value 96.167386
iter 10 value 94.491528
iter 20 value 91.077527
iter 30 value 87.272091
iter 40 value 85.473984
iter 50 value 81.687257
iter 60 value 81.584206
iter 70 value 81.580201
final value 81.580130
converged
Fitting Repeat 5
# weights: 103
initial value 96.916118
iter 10 value 92.818882
iter 20 value 90.058630
iter 30 value 83.514597
iter 40 value 81.535500
iter 50 value 80.131253
iter 60 value 79.830968
iter 70 value 79.674057
iter 80 value 79.632825
iter 90 value 79.468108
iter 100 value 79.418666
final value 79.418666
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 109.471812
iter 10 value 94.643847
iter 20 value 94.337443
iter 30 value 92.753168
iter 40 value 82.480958
iter 50 value 80.858398
iter 60 value 80.059203
iter 70 value 79.916822
iter 80 value 79.374097
iter 90 value 78.645112
iter 100 value 78.208882
final value 78.208882
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.325237
iter 10 value 94.682729
iter 20 value 93.068696
iter 30 value 90.651045
iter 40 value 90.494110
iter 50 value 90.453988
iter 60 value 90.373840
iter 70 value 88.845457
iter 80 value 82.472772
iter 90 value 80.697448
iter 100 value 80.305944
final value 80.305944
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.033500
iter 10 value 94.488562
iter 20 value 83.409202
iter 30 value 82.392235
iter 40 value 82.068916
iter 50 value 80.352916
iter 60 value 79.115261
iter 70 value 78.692709
iter 80 value 78.553541
iter 90 value 78.369422
iter 100 value 78.147066
final value 78.147066
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.158781
iter 10 value 94.392000
iter 20 value 93.888409
iter 30 value 83.590576
iter 40 value 82.786778
iter 50 value 80.233688
iter 60 value 79.551946
iter 70 value 79.094758
iter 80 value 78.367852
iter 90 value 77.879634
iter 100 value 77.515997
final value 77.515997
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.247010
iter 10 value 94.481817
iter 20 value 83.674241
iter 30 value 82.336432
iter 40 value 82.023661
iter 50 value 80.896798
iter 60 value 79.770441
iter 70 value 79.651220
iter 80 value 79.435632
iter 90 value 79.130886
iter 100 value 79.083619
final value 79.083619
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.782800
iter 10 value 94.653470
iter 20 value 86.188028
iter 30 value 80.551307
iter 40 value 80.099570
iter 50 value 80.065511
iter 60 value 79.660871
iter 70 value 79.228665
iter 80 value 79.067916
iter 90 value 78.863010
iter 100 value 78.236406
final value 78.236406
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.713211
iter 10 value 100.014889
iter 20 value 94.389820
iter 30 value 87.340742
iter 40 value 82.818626
iter 50 value 80.023519
iter 60 value 78.799818
iter 70 value 77.929738
iter 80 value 77.662898
iter 90 value 77.405826
iter 100 value 77.329286
final value 77.329286
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 122.764166
iter 10 value 95.216884
iter 20 value 92.714011
iter 30 value 88.351020
iter 40 value 82.613477
iter 50 value 80.467946
iter 60 value 78.799616
iter 70 value 78.410723
iter 80 value 78.169241
iter 90 value 77.979637
iter 100 value 77.837624
final value 77.837624
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 121.548662
iter 10 value 94.456561
iter 20 value 81.595799
iter 30 value 80.570954
iter 40 value 80.458912
iter 50 value 79.912257
iter 60 value 78.673317
iter 70 value 78.097281
iter 80 value 77.974827
iter 90 value 77.840501
iter 100 value 77.598392
final value 77.598392
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 122.218364
iter 10 value 94.551216
iter 20 value 92.496902
iter 30 value 84.376250
iter 40 value 81.120625
iter 50 value 80.141899
iter 60 value 79.901435
iter 70 value 79.175817
iter 80 value 78.536635
iter 90 value 78.135483
iter 100 value 77.751685
final value 77.751685
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.580140
final value 94.485789
converged
Fitting Repeat 2
# weights: 103
initial value 104.047569
final value 94.485788
converged
Fitting Repeat 3
# weights: 103
initial value 97.902247
final value 94.486124
converged
Fitting Repeat 4
# weights: 103
initial value 98.040611
final value 94.485881
converged
Fitting Repeat 5
# weights: 103
initial value 95.574956
final value 94.486040
converged
Fitting Repeat 1
# weights: 305
initial value 119.571214
iter 10 value 94.489244
iter 20 value 94.434607
final value 93.871665
converged
Fitting Repeat 2
# weights: 305
initial value 96.116742
iter 10 value 94.061716
iter 20 value 94.056988
iter 30 value 94.051692
iter 40 value 93.856195
final value 93.838804
converged
Fitting Repeat 3
# weights: 305
initial value 97.112669
iter 10 value 91.936097
iter 20 value 91.934274
iter 30 value 91.931784
iter 40 value 91.931429
iter 50 value 91.931115
iter 60 value 91.930974
iter 60 value 91.930973
iter 60 value 91.930973
final value 91.930973
converged
Fitting Repeat 4
# weights: 305
initial value 100.242143
iter 10 value 94.279949
iter 20 value 94.146442
iter 30 value 89.768429
iter 40 value 79.883085
iter 50 value 79.804607
iter 60 value 79.803898
iter 70 value 79.803273
iter 80 value 79.319535
iter 90 value 77.958788
iter 100 value 77.886034
final value 77.886034
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.166834
iter 10 value 94.280345
iter 20 value 94.275359
iter 30 value 93.019203
iter 40 value 81.562894
iter 50 value 80.079701
iter 60 value 80.063781
iter 70 value 80.063419
final value 80.063415
converged
Fitting Repeat 1
# weights: 507
initial value 97.350272
iter 10 value 85.837542
iter 20 value 78.905482
iter 30 value 77.506662
iter 40 value 77.312371
iter 50 value 77.308530
iter 60 value 77.300864
iter 70 value 77.282524
iter 80 value 77.260944
iter 90 value 77.230224
iter 100 value 77.152317
final value 77.152317
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.052534
iter 10 value 89.977365
iter 20 value 88.329216
iter 30 value 87.845093
iter 40 value 84.499981
iter 50 value 83.512722
iter 60 value 83.466557
iter 70 value 83.321913
iter 80 value 83.305002
iter 90 value 83.053672
iter 100 value 83.053528
final value 83.053528
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.445964
iter 10 value 93.597652
iter 20 value 93.505152
iter 30 value 93.430805
iter 40 value 93.170435
iter 50 value 93.168855
iter 60 value 93.167490
final value 93.167288
converged
Fitting Repeat 4
# weights: 507
initial value 105.155408
iter 10 value 93.816226
iter 20 value 93.815604
iter 30 value 93.783123
iter 40 value 93.775938
final value 93.774825
converged
Fitting Repeat 5
# weights: 507
initial value 97.061135
iter 10 value 87.326047
iter 20 value 87.198030
iter 30 value 87.033815
final value 87.031547
converged
Fitting Repeat 1
# weights: 103
initial value 115.294807
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 103.721623
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.555103
iter 10 value 94.360495
final value 94.355938
converged
Fitting Repeat 4
# weights: 103
initial value 103.258612
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.055045
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 111.740220
iter 10 value 94.022728
iter 10 value 94.022727
iter 10 value 94.022727
final value 94.022727
converged
Fitting Repeat 2
# weights: 305
initial value 108.301331
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 107.905769
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 96.643557
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 99.359951
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 95.869120
iter 10 value 87.692844
iter 20 value 87.172846
iter 30 value 86.865049
final value 86.864991
converged
Fitting Repeat 2
# weights: 507
initial value 107.899590
iter 10 value 88.314940
iter 20 value 86.683879
iter 30 value 86.653157
final value 86.653104
converged
Fitting Repeat 3
# weights: 507
initial value 98.632227
iter 10 value 92.811996
iter 20 value 82.274755
iter 30 value 78.679021
iter 40 value 78.191438
iter 50 value 78.089311
iter 60 value 78.055706
final value 78.055665
converged
Fitting Repeat 4
# weights: 507
initial value 96.183181
final value 94.467391
converged
Fitting Repeat 5
# weights: 507
initial value 99.393529
final value 94.467391
converged
Fitting Repeat 1
# weights: 103
initial value 98.456710
iter 10 value 94.572062
iter 20 value 92.612200
iter 30 value 90.658421
iter 40 value 90.113110
iter 50 value 89.835203
iter 60 value 82.903925
iter 70 value 81.783568
iter 80 value 81.164231
iter 90 value 80.083672
iter 100 value 79.062201
final value 79.062201
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.801441
iter 10 value 94.460425
iter 20 value 82.492092
iter 30 value 81.449413
iter 40 value 81.084773
iter 50 value 80.347357
iter 60 value 79.776856
iter 70 value 79.742897
final value 79.742892
converged
Fitting Repeat 3
# weights: 103
initial value 96.702522
iter 10 value 94.424996
iter 20 value 89.271979
iter 30 value 84.099038
iter 40 value 82.962331
iter 50 value 82.745857
iter 60 value 81.781593
iter 70 value 81.334635
iter 80 value 81.167343
final value 81.166345
converged
Fitting Repeat 4
# weights: 103
initial value 106.914511
iter 10 value 94.487833
iter 20 value 93.192958
iter 30 value 85.022661
iter 40 value 81.690409
iter 50 value 80.808573
iter 60 value 80.466039
iter 70 value 80.336161
iter 80 value 80.321253
final value 80.321247
converged
Fitting Repeat 5
# weights: 103
initial value 105.036623
iter 10 value 94.492520
iter 20 value 94.444594
iter 30 value 83.284035
iter 40 value 82.151490
iter 50 value 81.823064
iter 60 value 81.101500
iter 70 value 80.871066
iter 80 value 80.870336
iter 80 value 80.870335
iter 80 value 80.870335
final value 80.870335
converged
Fitting Repeat 1
# weights: 305
initial value 108.305263
iter 10 value 94.591288
iter 20 value 94.272454
iter 30 value 82.824626
iter 40 value 82.165427
iter 50 value 80.883746
iter 60 value 80.135364
iter 70 value 78.372206
iter 80 value 77.789074
iter 90 value 77.485201
iter 100 value 77.256413
final value 77.256413
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 121.695029
iter 10 value 94.504090
iter 20 value 92.381447
iter 30 value 83.909928
iter 40 value 83.030562
iter 50 value 82.103381
iter 60 value 81.818850
iter 70 value 81.224195
iter 80 value 81.081907
iter 90 value 80.009799
iter 100 value 79.337641
final value 79.337641
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.092976
iter 10 value 93.494604
iter 20 value 90.331914
iter 30 value 84.411788
iter 40 value 81.975778
iter 50 value 81.752032
iter 60 value 81.042471
iter 70 value 79.747251
iter 80 value 78.026162
iter 90 value 77.695822
iter 100 value 77.413027
final value 77.413027
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 123.331791
iter 10 value 94.274355
iter 20 value 86.471307
iter 30 value 83.555650
iter 40 value 82.245208
iter 50 value 81.645847
iter 60 value 80.917356
iter 70 value 80.295753
iter 80 value 79.753104
iter 90 value 79.720095
iter 100 value 79.649577
final value 79.649577
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.783548
iter 10 value 94.423268
iter 20 value 88.151615
iter 30 value 81.736227
iter 40 value 81.218309
iter 50 value 80.518832
iter 60 value 79.317198
iter 70 value 78.236358
iter 80 value 77.719379
iter 90 value 77.626005
iter 100 value 77.588298
final value 77.588298
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.904910
iter 10 value 95.916060
iter 20 value 88.597774
iter 30 value 87.514022
iter 40 value 87.103549
iter 50 value 86.567969
iter 60 value 83.859932
iter 70 value 81.984973
iter 80 value 81.478422
iter 90 value 80.860755
iter 100 value 80.167123
final value 80.167123
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.508120
iter 10 value 95.010753
iter 20 value 90.788998
iter 30 value 80.498380
iter 40 value 79.017971
iter 50 value 78.178798
iter 60 value 78.091498
iter 70 value 78.024812
iter 80 value 77.903601
iter 90 value 77.853758
iter 100 value 77.777935
final value 77.777935
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 124.388587
iter 10 value 94.265270
iter 20 value 89.279024
iter 30 value 85.346616
iter 40 value 82.512043
iter 50 value 81.113212
iter 60 value 79.002500
iter 70 value 78.000030
iter 80 value 77.823368
iter 90 value 77.713284
iter 100 value 77.602342
final value 77.602342
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.942164
iter 10 value 94.404548
iter 20 value 89.878346
iter 30 value 84.696099
iter 40 value 80.719383
iter 50 value 79.720033
iter 60 value 78.741838
iter 70 value 77.753699
iter 80 value 77.197734
iter 90 value 77.146571
iter 100 value 77.104047
final value 77.104047
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.580021
iter 10 value 93.975334
iter 20 value 87.317473
iter 30 value 81.974842
iter 40 value 79.838162
iter 50 value 79.065541
iter 60 value 78.637029
iter 70 value 78.569810
iter 80 value 78.380938
iter 90 value 78.027362
iter 100 value 77.697599
final value 77.697599
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.805748
final value 94.486186
converged
Fitting Repeat 2
# weights: 103
initial value 97.615492
final value 94.486764
converged
Fitting Repeat 3
# weights: 103
initial value 110.690346
final value 94.485737
converged
Fitting Repeat 4
# weights: 103
initial value 100.724758
final value 94.486047
converged
Fitting Repeat 5
# weights: 103
initial value 104.021387
final value 94.485955
converged
Fitting Repeat 1
# weights: 305
initial value 105.530884
iter 10 value 94.489123
iter 20 value 90.627717
iter 30 value 89.913115
final value 89.913060
converged
Fitting Repeat 2
# weights: 305
initial value 99.655641
iter 10 value 94.489355
iter 20 value 94.459279
iter 30 value 86.939706
iter 40 value 80.738608
iter 50 value 79.761438
iter 60 value 79.257237
iter 70 value 78.988057
iter 80 value 78.981935
iter 90 value 78.972179
iter 100 value 78.435580
final value 78.435580
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.049028
iter 10 value 94.484160
iter 20 value 94.360920
iter 30 value 91.946940
iter 40 value 91.943293
iter 50 value 91.939706
iter 60 value 91.938527
iter 70 value 91.419342
iter 80 value 83.371747
iter 90 value 79.907080
iter 100 value 77.935635
final value 77.935635
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.280115
iter 10 value 94.472285
iter 20 value 94.467847
iter 30 value 94.397724
iter 40 value 82.975646
iter 50 value 81.297316
iter 60 value 81.246166
iter 70 value 80.423858
iter 80 value 78.463846
iter 90 value 76.499554
iter 100 value 75.985797
final value 75.985797
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.896043
iter 10 value 94.135094
iter 20 value 94.030339
iter 30 value 94.027461
iter 40 value 93.470466
iter 50 value 84.341346
iter 60 value 81.655329
iter 70 value 81.446747
iter 80 value 81.439727
iter 90 value 81.431053
iter 100 value 81.361501
final value 81.361501
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 100.239372
iter 10 value 94.492247
iter 20 value 94.282596
iter 30 value 89.909686
iter 40 value 89.906410
iter 50 value 81.453641
iter 60 value 80.584896
iter 70 value 80.569158
iter 80 value 80.390880
iter 90 value 78.602504
iter 100 value 77.661104
final value 77.661104
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.737892
iter 10 value 94.475729
iter 20 value 94.467900
iter 30 value 94.438349
iter 40 value 92.901744
iter 50 value 81.942508
iter 60 value 81.326557
iter 70 value 81.321602
iter 80 value 80.984855
final value 80.983823
converged
Fitting Repeat 3
# weights: 507
initial value 97.765975
iter 10 value 94.492830
iter 20 value 94.483517
iter 30 value 94.354810
iter 40 value 88.115872
iter 50 value 88.013350
iter 60 value 83.328570
iter 70 value 80.718333
iter 80 value 80.355867
iter 90 value 79.935379
iter 100 value 79.845775
final value 79.845775
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.424638
iter 10 value 94.408263
iter 20 value 94.400893
iter 30 value 94.387649
iter 40 value 94.351057
iter 50 value 94.301587
iter 60 value 90.629877
iter 70 value 89.721448
iter 80 value 86.393705
iter 90 value 86.328521
iter 100 value 86.304359
final value 86.304359
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 96.473549
iter 10 value 94.492961
iter 20 value 94.484964
iter 30 value 94.104209
iter 40 value 88.482495
iter 50 value 84.015479
iter 60 value 81.758123
iter 70 value 79.190024
iter 80 value 79.039939
iter 90 value 78.705016
iter 100 value 78.651539
final value 78.651539
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 122.966766
iter 10 value 117.749231
iter 20 value 117.684375
iter 30 value 117.554498
iter 40 value 117.553009
iter 50 value 117.514395
iter 60 value 117.508084
final value 117.501326
converged
Fitting Repeat 2
# weights: 305
initial value 118.854240
iter 10 value 117.763721
iter 20 value 117.288678
iter 30 value 110.505355
iter 40 value 110.417210
final value 110.417182
converged
Fitting Repeat 3
# weights: 305
initial value 146.560243
iter 10 value 117.847411
iter 20 value 117.532918
iter 30 value 117.516501
iter 40 value 117.473646
iter 50 value 117.471407
iter 60 value 117.459731
iter 70 value 117.456355
iter 80 value 109.895121
iter 90 value 109.412636
final value 109.412632
converged
Fitting Repeat 4
# weights: 305
initial value 131.952704
iter 10 value 117.763694
iter 20 value 117.760009
final value 117.729436
converged
Fitting Repeat 5
# weights: 305
initial value 120.029537
iter 10 value 117.894196
iter 20 value 117.664016
final value 117.549773
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Sat Mar 14 00:31:22 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
39.940 1.135 93.773
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.452 | 0.640 | 34.126 | |
| FreqInteractors | 0.455 | 0.025 | 0.480 | |
| calculateAAC | 0.030 | 0.002 | 0.033 | |
| calculateAutocor | 0.278 | 0.023 | 0.302 | |
| calculateCTDC | 0.077 | 0.001 | 0.078 | |
| calculateCTDD | 0.476 | 0.002 | 0.479 | |
| calculateCTDT | 0.160 | 0.001 | 0.161 | |
| calculateCTriad | 0.388 | 0.003 | 0.392 | |
| calculateDC | 0.085 | 0.007 | 0.093 | |
| calculateF | 0.324 | 0.000 | 0.324 | |
| calculateKSAAP | 0.110 | 0.004 | 0.115 | |
| calculateQD_Sm | 1.946 | 0.024 | 1.970 | |
| calculateTC | 1.573 | 0.142 | 1.723 | |
| calculateTC_Sm | 0.289 | 0.004 | 0.294 | |
| corr_plot | 34.976 | 0.462 | 35.484 | |
| enrichfindP | 0.529 | 0.050 | 11.546 | |
| enrichfind_hp | 0.040 | 0.003 | 1.014 | |
| enrichplot | 0.462 | 0.003 | 0.465 | |
| filter_missing_values | 0.001 | 0.000 | 0.002 | |
| getFASTA | 0.410 | 0.011 | 3.636 | |
| getHPI | 0.000 | 0.002 | 0.002 | |
| get_negativePPI | 0.004 | 0.000 | 0.004 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.003 | 0.001 | 0.004 | |
| plotPPI | 0.093 | 0.003 | 0.096 | |
| pred_ensembel | 13.158 | 0.312 | 12.147 | |
| var_imp | 35.660 | 0.645 | 36.332 | |