| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-10 11:32 -0400 (Tue, 10 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4522 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1009/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-10 00:04:27 -0400 (Tue, 10 Mar 2026) |
| EndedAt: 2026-03-10 00:19:26 -0400 (Tue, 10 Mar 2026) |
| EllapsedTime: 899.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-10 04:04:27 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 35.199 0.484 35.714
var_imp 33.834 0.496 34.335
FSmethod 33.283 0.581 33.897
pred_ensembel 12.923 0.160 11.767
enrichfindP 0.590 0.040 10.557
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 99.284046
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 98.037482
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.203894
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 100.448468
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 103.631965
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 113.629259
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 107.464936
iter 10 value 93.672991
final value 93.672973
converged
Fitting Repeat 3
# weights: 305
initial value 104.568509
iter 10 value 93.991526
iter 10 value 93.991525
iter 10 value 93.991525
final value 93.991525
converged
Fitting Repeat 4
# weights: 305
initial value 94.348039
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 118.912888
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 107.378108
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 99.539303
iter 10 value 93.599522
final value 93.599230
converged
Fitting Repeat 3
# weights: 507
initial value 110.058970
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 98.358643
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 108.950139
iter 10 value 93.447371
final value 93.401473
converged
Fitting Repeat 1
# weights: 103
initial value 97.837703
iter 10 value 94.114272
iter 20 value 93.609830
iter 30 value 93.584159
iter 40 value 93.221297
iter 50 value 89.713546
iter 60 value 87.270675
iter 70 value 83.808883
iter 80 value 83.018917
iter 90 value 82.722417
iter 100 value 82.650737
final value 82.650737
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.834828
iter 10 value 94.028979
iter 20 value 88.597273
iter 30 value 84.446606
iter 40 value 83.842747
iter 50 value 83.631193
iter 60 value 81.317921
iter 70 value 80.061667
iter 80 value 80.009737
iter 90 value 80.006033
iter 90 value 80.006032
iter 90 value 80.006032
final value 80.006032
converged
Fitting Repeat 3
# weights: 103
initial value 101.443097
iter 10 value 94.081355
iter 20 value 88.795774
iter 30 value 84.788835
iter 40 value 83.652160
iter 50 value 83.128806
iter 60 value 83.105104
iter 70 value 83.104758
final value 83.104581
converged
Fitting Repeat 4
# weights: 103
initial value 104.290532
iter 10 value 94.031033
iter 20 value 93.406391
iter 30 value 93.363332
iter 40 value 93.305175
iter 50 value 92.440509
iter 60 value 90.133967
iter 70 value 84.106324
iter 80 value 83.470353
iter 90 value 83.430981
iter 100 value 83.386350
final value 83.386350
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 110.644837
iter 10 value 100.295515
iter 20 value 94.056866
iter 30 value 93.856549
iter 40 value 91.270465
iter 50 value 86.937979
iter 60 value 86.053027
iter 70 value 83.452393
iter 80 value 82.933304
iter 90 value 82.790586
iter 100 value 82.663064
final value 82.663064
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 100.516694
iter 10 value 94.267771
iter 20 value 93.870457
iter 30 value 90.243094
iter 40 value 85.949354
iter 50 value 85.163135
iter 60 value 81.193174
iter 70 value 80.114009
iter 80 value 79.838688
iter 90 value 79.512315
iter 100 value 79.249829
final value 79.249829
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.169845
iter 10 value 94.164867
iter 20 value 93.717025
iter 30 value 88.126475
iter 40 value 87.727889
iter 50 value 86.862844
iter 60 value 84.182001
iter 70 value 83.103601
iter 80 value 82.969175
iter 90 value 82.911065
iter 100 value 82.833299
final value 82.833299
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.424970
iter 10 value 94.059490
iter 20 value 92.698925
iter 30 value 88.747058
iter 40 value 88.026086
iter 50 value 86.857278
iter 60 value 82.024821
iter 70 value 81.456482
iter 80 value 81.166485
iter 90 value 80.802279
iter 100 value 79.180148
final value 79.180148
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.037278
iter 10 value 94.125576
iter 20 value 94.053469
iter 30 value 88.556859
iter 40 value 84.893358
iter 50 value 83.322029
iter 60 value 82.846452
iter 70 value 81.477654
iter 80 value 80.607348
iter 90 value 79.147591
iter 100 value 78.649542
final value 78.649542
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.778376
iter 10 value 94.030111
iter 20 value 90.903156
iter 30 value 86.242134
iter 40 value 86.097817
iter 50 value 83.324332
iter 60 value 82.724522
iter 70 value 82.695412
iter 80 value 82.278126
iter 90 value 81.504657
iter 100 value 81.170845
final value 81.170845
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.911477
iter 10 value 94.043262
iter 20 value 90.907959
iter 30 value 88.610635
iter 40 value 84.752939
iter 50 value 81.872320
iter 60 value 79.784114
iter 70 value 79.206689
iter 80 value 78.923558
iter 90 value 78.576008
iter 100 value 78.350046
final value 78.350046
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.207301
iter 10 value 93.553173
iter 20 value 84.377884
iter 30 value 81.740446
iter 40 value 80.828541
iter 50 value 80.149260
iter 60 value 78.972354
iter 70 value 78.605801
iter 80 value 78.453742
iter 90 value 78.228030
iter 100 value 78.141113
final value 78.141113
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.835695
iter 10 value 97.380406
iter 20 value 93.113257
iter 30 value 85.498197
iter 40 value 80.808099
iter 50 value 79.703568
iter 60 value 78.745171
iter 70 value 78.391716
iter 80 value 78.252757
iter 90 value 77.960744
iter 100 value 77.890299
final value 77.890299
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.954596
iter 10 value 93.759811
iter 20 value 93.483790
iter 30 value 86.722481
iter 40 value 85.330556
iter 50 value 84.228098
iter 60 value 82.442516
iter 70 value 80.405857
iter 80 value 80.021056
iter 90 value 79.407539
iter 100 value 79.171000
final value 79.171000
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.528903
iter 10 value 93.845498
iter 20 value 86.971891
iter 30 value 85.566664
iter 40 value 82.832113
iter 50 value 81.514240
iter 60 value 79.683723
iter 70 value 78.918693
iter 80 value 78.850672
iter 90 value 78.819169
iter 100 value 78.761455
final value 78.761455
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.298104
iter 10 value 93.924399
iter 20 value 93.861508
iter 30 value 93.844563
final value 93.844292
converged
Fitting Repeat 2
# weights: 103
initial value 94.408579
final value 94.054739
converged
Fitting Repeat 3
# weights: 103
initial value 98.478348
final value 94.054694
converged
Fitting Repeat 4
# weights: 103
initial value 94.548733
final value 94.054779
converged
Fitting Repeat 5
# weights: 103
initial value 99.847901
iter 10 value 94.054665
iter 20 value 94.052901
iter 30 value 93.538270
iter 40 value 93.465930
final value 93.387311
converged
Fitting Repeat 1
# weights: 305
initial value 100.889163
iter 10 value 94.057603
iter 20 value 93.792461
iter 30 value 89.841190
iter 40 value 89.380250
iter 50 value 89.378301
iter 60 value 89.372635
iter 70 value 89.366394
iter 80 value 89.329766
iter 90 value 85.574093
iter 100 value 82.639630
final value 82.639630
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.400207
iter 10 value 94.057865
iter 20 value 94.052969
iter 30 value 92.613545
iter 40 value 91.761958
iter 50 value 87.644337
iter 60 value 85.446315
iter 70 value 85.028626
iter 80 value 85.026994
final value 85.026980
converged
Fitting Repeat 3
# weights: 305
initial value 106.149984
iter 10 value 94.057320
iter 20 value 93.651938
iter 30 value 89.734618
iter 40 value 88.928038
iter 50 value 88.770703
iter 60 value 88.757147
iter 70 value 88.618246
iter 80 value 88.601676
iter 80 value 88.601676
final value 88.601674
converged
Fitting Repeat 4
# weights: 305
initial value 97.517477
iter 10 value 94.057144
iter 20 value 93.607925
final value 93.599863
converged
Fitting Repeat 5
# weights: 305
initial value 96.064801
iter 10 value 94.057577
iter 20 value 94.042027
iter 30 value 90.795032
iter 40 value 86.114917
iter 50 value 83.817143
iter 60 value 79.866128
iter 70 value 78.395307
iter 80 value 78.160285
iter 90 value 78.155765
iter 100 value 78.155167
final value 78.155167
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 99.359997
iter 10 value 94.061034
iter 20 value 86.767183
iter 30 value 86.200385
iter 40 value 85.996173
final value 85.981110
converged
Fitting Repeat 2
# weights: 507
initial value 114.091656
iter 10 value 93.680910
iter 20 value 93.675619
iter 30 value 93.417709
iter 40 value 93.409114
final value 93.409079
converged
Fitting Repeat 3
# weights: 507
initial value 99.496663
iter 10 value 93.999962
iter 20 value 93.960765
iter 30 value 93.863780
iter 40 value 93.861870
final value 93.861704
converged
Fitting Repeat 4
# weights: 507
initial value 95.432261
iter 10 value 93.389024
iter 20 value 93.361287
iter 30 value 93.358914
iter 40 value 90.751348
iter 50 value 89.671584
iter 60 value 82.659088
iter 70 value 81.545150
iter 80 value 80.783558
iter 90 value 79.638126
iter 100 value 79.527569
final value 79.527569
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.827088
iter 10 value 94.059747
iter 20 value 93.760225
iter 30 value 93.205639
iter 40 value 93.197004
iter 40 value 93.197003
iter 40 value 93.197003
final value 93.197003
converged
Fitting Repeat 1
# weights: 103
initial value 98.684776
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 99.060375
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 97.550449
iter 10 value 85.844223
final value 85.759473
converged
Fitting Repeat 4
# weights: 103
initial value 102.756863
final value 93.836066
converged
Fitting Repeat 5
# weights: 103
initial value 101.035044
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 111.514682
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 99.934586
final value 93.810010
converged
Fitting Repeat 3
# weights: 305
initial value 111.463837
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 99.799860
final value 93.836066
converged
Fitting Repeat 5
# weights: 305
initial value 104.620664
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 108.239911
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 102.182679
final value 92.892737
converged
Fitting Repeat 3
# weights: 507
initial value 99.067430
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 100.862609
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 101.360726
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 96.182970
iter 10 value 94.089128
iter 20 value 90.963197
iter 30 value 86.964741
iter 40 value 86.477125
iter 50 value 86.404102
iter 60 value 86.276874
iter 70 value 85.871894
iter 80 value 85.740863
final value 85.740745
converged
Fitting Repeat 2
# weights: 103
initial value 102.861913
iter 10 value 87.397922
iter 20 value 86.718753
iter 30 value 86.388581
iter 40 value 86.153571
iter 50 value 86.149696
final value 86.149690
converged
Fitting Repeat 3
# weights: 103
initial value 95.964456
iter 10 value 94.063077
iter 20 value 93.992458
iter 30 value 89.163179
iter 40 value 88.111603
iter 50 value 86.750037
iter 60 value 86.129833
iter 70 value 86.013615
iter 80 value 86.000979
iter 90 value 85.829489
iter 100 value 85.747425
final value 85.747425
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 123.682169
iter 10 value 93.702815
iter 20 value 90.165586
iter 30 value 88.678839
iter 40 value 87.963482
iter 50 value 87.602339
iter 60 value 87.356104
iter 70 value 86.955179
iter 80 value 86.825677
iter 90 value 86.688626
final value 86.688619
converged
Fitting Repeat 5
# weights: 103
initial value 113.187356
iter 10 value 93.482499
iter 20 value 92.677097
iter 30 value 87.153032
iter 40 value 86.739302
iter 50 value 85.932275
iter 60 value 84.988758
iter 70 value 84.867131
final value 84.861185
converged
Fitting Repeat 1
# weights: 305
initial value 122.786104
iter 10 value 94.811498
iter 20 value 94.050489
iter 30 value 89.224158
iter 40 value 87.479066
iter 50 value 86.296789
iter 60 value 84.824219
iter 70 value 84.446466
iter 80 value 84.135065
iter 90 value 83.761373
iter 100 value 83.501366
final value 83.501366
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.212677
iter 10 value 88.581513
iter 20 value 86.478236
iter 30 value 85.945994
iter 40 value 85.908326
iter 50 value 85.588038
iter 60 value 84.733001
iter 70 value 84.189711
iter 80 value 83.618209
iter 90 value 83.559039
iter 100 value 83.416567
final value 83.416567
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.506885
iter 10 value 94.397331
iter 20 value 94.069657
iter 30 value 93.994373
iter 40 value 93.824190
iter 50 value 93.727825
iter 60 value 88.473620
iter 70 value 87.085059
iter 80 value 86.772580
iter 90 value 86.552878
iter 100 value 86.435598
final value 86.435598
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.332288
iter 10 value 92.767572
iter 20 value 87.096160
iter 30 value 86.767843
iter 40 value 86.542959
iter 50 value 86.387105
iter 60 value 85.714555
iter 70 value 85.100657
iter 80 value 84.588858
iter 90 value 84.332678
iter 100 value 84.130197
final value 84.130197
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.073163
iter 10 value 94.021773
iter 20 value 91.786680
iter 30 value 89.920491
iter 40 value 89.017500
iter 50 value 86.189603
iter 60 value 84.689978
iter 70 value 83.906201
iter 80 value 83.260199
iter 90 value 83.003016
iter 100 value 82.972462
final value 82.972462
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.140607
iter 10 value 94.724667
iter 20 value 88.974222
iter 30 value 87.349305
iter 40 value 85.814994
iter 50 value 85.479140
iter 60 value 85.246906
iter 70 value 85.020039
iter 80 value 84.709835
iter 90 value 84.429133
iter 100 value 84.197400
final value 84.197400
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.021440
iter 10 value 94.322450
iter 20 value 92.398772
iter 30 value 87.594277
iter 40 value 86.188010
iter 50 value 85.023323
iter 60 value 84.501076
iter 70 value 83.967946
iter 80 value 83.652158
iter 90 value 83.367442
iter 100 value 83.344285
final value 83.344285
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.221015
iter 10 value 94.393891
iter 20 value 92.280040
iter 30 value 90.992818
iter 40 value 87.474113
iter 50 value 85.880387
iter 60 value 84.977119
iter 70 value 84.780709
iter 80 value 83.913656
iter 90 value 83.345123
iter 100 value 83.035629
final value 83.035629
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.920829
iter 10 value 94.148417
iter 20 value 89.393917
iter 30 value 86.957025
iter 40 value 85.879389
iter 50 value 85.161422
iter 60 value 84.304001
iter 70 value 83.690919
iter 80 value 83.103807
iter 90 value 82.944165
iter 100 value 82.918763
final value 82.918763
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 114.785280
iter 10 value 94.222918
iter 20 value 93.980530
iter 30 value 93.264774
iter 40 value 91.042017
iter 50 value 90.184157
iter 60 value 87.996337
iter 70 value 86.983651
iter 80 value 86.804167
iter 90 value 85.149629
iter 100 value 84.176211
final value 84.176211
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.506015
final value 94.054520
converged
Fitting Repeat 2
# weights: 103
initial value 100.176799
final value 94.054500
converged
Fitting Repeat 3
# weights: 103
initial value 99.567987
iter 10 value 94.054452
iter 20 value 94.052928
iter 30 value 93.825565
iter 40 value 92.620453
iter 50 value 92.484100
iter 60 value 92.483555
final value 92.483542
converged
Fitting Repeat 4
# weights: 103
initial value 101.195422
final value 94.055440
converged
Fitting Repeat 5
# weights: 103
initial value 95.915088
final value 94.054839
converged
Fitting Repeat 1
# weights: 305
initial value 95.213987
iter 10 value 94.057593
iter 20 value 94.052928
iter 30 value 93.510163
iter 40 value 88.002716
iter 50 value 87.939204
final value 87.939037
converged
Fitting Repeat 2
# weights: 305
initial value 113.094243
iter 10 value 86.951075
iter 20 value 86.930984
iter 30 value 86.930158
iter 40 value 86.929776
iter 50 value 86.214198
iter 60 value 85.217727
iter 70 value 84.966127
iter 80 value 84.949829
iter 90 value 84.949463
final value 84.948056
converged
Fitting Repeat 3
# weights: 305
initial value 120.654736
iter 10 value 93.996052
iter 20 value 85.983610
iter 30 value 85.980380
iter 40 value 84.612667
iter 50 value 82.712004
iter 60 value 82.057028
iter 70 value 82.017649
iter 80 value 82.014091
iter 90 value 82.013886
iter 100 value 82.013767
final value 82.013767
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.694255
iter 10 value 93.840936
iter 20 value 93.810713
iter 30 value 87.085833
final value 86.931353
converged
Fitting Repeat 5
# weights: 305
initial value 102.605123
iter 10 value 94.057339
iter 20 value 94.052930
iter 20 value 94.052930
iter 20 value 94.052930
final value 94.052930
converged
Fitting Repeat 1
# weights: 507
initial value 99.593065
iter 10 value 94.061140
iter 20 value 93.836494
final value 93.836439
converged
Fitting Repeat 2
# weights: 507
initial value 102.454623
iter 10 value 94.060940
iter 20 value 93.899877
iter 30 value 93.407110
iter 40 value 87.960526
iter 50 value 84.604388
iter 60 value 84.554775
iter 70 value 83.958598
iter 80 value 83.951593
final value 83.951543
converged
Fitting Repeat 3
# weights: 507
initial value 108.161587
iter 10 value 94.061070
iter 20 value 94.030770
iter 30 value 92.692182
iter 40 value 92.508718
iter 50 value 92.301148
iter 60 value 91.084796
iter 70 value 87.867952
iter 80 value 85.906433
iter 90 value 85.177699
iter 100 value 85.143477
final value 85.143477
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.895536
iter 10 value 93.794013
iter 20 value 93.788360
final value 93.786701
converged
Fitting Repeat 5
# weights: 507
initial value 106.523300
iter 10 value 93.287441
iter 20 value 92.702889
iter 30 value 92.696840
final value 92.696206
converged
Fitting Repeat 1
# weights: 103
initial value 100.014316
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.308583
final value 94.322898
converged
Fitting Repeat 3
# weights: 103
initial value 96.219269
final value 94.354396
converged
Fitting Repeat 4
# weights: 103
initial value 101.557489
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.340407
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.147950
iter 10 value 93.837684
iter 20 value 91.108663
final value 87.590732
converged
Fitting Repeat 2
# weights: 305
initial value 102.956617
iter 10 value 88.997620
iter 20 value 84.986519
iter 30 value 84.156807
iter 40 value 83.896552
iter 50 value 83.689007
iter 60 value 83.590425
final value 83.590077
converged
Fitting Repeat 3
# weights: 305
initial value 98.400833
final value 93.809648
converged
Fitting Repeat 4
# weights: 305
initial value 98.883741
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 101.303712
final value 94.354394
converged
Fitting Repeat 1
# weights: 507
initial value 103.684541
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 112.645467
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 98.195064
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 98.902853
iter 10 value 93.127927
iter 20 value 93.052122
final value 93.051899
converged
Fitting Repeat 5
# weights: 507
initial value 96.238037
iter 10 value 93.809747
iter 20 value 93.305299
iter 30 value 93.283356
final value 93.283334
converged
Fitting Repeat 1
# weights: 103
initial value 103.415119
iter 10 value 94.488659
iter 20 value 94.389189
iter 30 value 93.692996
iter 40 value 90.630194
iter 50 value 88.346693
iter 60 value 88.295243
iter 70 value 86.543788
iter 80 value 83.792700
iter 90 value 82.341442
iter 100 value 81.270738
final value 81.270738
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.915483
iter 10 value 94.377506
iter 20 value 89.091132
iter 30 value 86.106856
iter 40 value 85.660238
iter 50 value 82.792112
iter 60 value 80.596632
iter 70 value 80.572397
iter 80 value 80.570497
iter 90 value 80.570165
final value 80.570135
converged
Fitting Repeat 3
# weights: 103
initial value 123.254122
iter 10 value 94.281755
iter 20 value 89.639628
iter 30 value 87.246002
iter 40 value 85.911367
iter 50 value 84.911912
iter 60 value 84.797460
iter 70 value 84.794955
iter 80 value 84.794707
final value 84.794565
converged
Fitting Repeat 4
# weights: 103
initial value 96.562815
iter 10 value 94.436086
iter 20 value 90.643588
iter 30 value 89.399411
iter 40 value 84.077099
iter 50 value 81.865512
iter 60 value 81.492146
iter 70 value 80.957200
iter 80 value 80.418477
iter 90 value 80.273777
final value 80.263821
converged
Fitting Repeat 5
# weights: 103
initial value 106.142111
iter 10 value 94.488859
iter 20 value 88.974116
iter 30 value 83.759528
iter 40 value 82.181376
iter 50 value 82.068676
iter 60 value 81.404495
iter 70 value 80.645242
iter 80 value 80.488899
iter 90 value 80.450586
iter 100 value 80.318653
final value 80.318653
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 103.486118
iter 10 value 94.260133
iter 20 value 92.082578
iter 30 value 84.683591
iter 40 value 83.945275
iter 50 value 83.437642
iter 60 value 81.598879
iter 70 value 80.826981
iter 80 value 80.793186
iter 90 value 80.760938
iter 100 value 80.670215
final value 80.670215
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.133210
iter 10 value 95.195774
iter 20 value 89.455336
iter 30 value 82.723000
iter 40 value 80.673823
iter 50 value 80.417946
iter 60 value 80.329046
iter 70 value 80.160149
iter 80 value 79.923987
iter 90 value 79.483560
iter 100 value 79.104918
final value 79.104918
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.629427
iter 10 value 94.467693
iter 20 value 88.270319
iter 30 value 85.882125
iter 40 value 85.817049
iter 50 value 85.176006
iter 60 value 83.338362
iter 70 value 80.764253
iter 80 value 80.308010
iter 90 value 79.748833
iter 100 value 79.630500
final value 79.630500
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.381293
iter 10 value 94.361770
iter 20 value 86.942536
iter 30 value 85.883918
iter 40 value 85.506560
iter 50 value 83.179409
iter 60 value 82.546063
iter 70 value 81.590932
iter 80 value 81.466763
iter 90 value 81.099828
iter 100 value 80.843436
final value 80.843436
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 116.101633
iter 10 value 94.772135
iter 20 value 90.646337
iter 30 value 85.636008
iter 40 value 83.730630
iter 50 value 82.125102
iter 60 value 81.940714
iter 70 value 81.111603
iter 80 value 79.833745
iter 90 value 79.481733
iter 100 value 79.197176
final value 79.197176
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.968861
iter 10 value 93.563285
iter 20 value 86.215881
iter 30 value 85.913284
iter 40 value 81.132195
iter 50 value 80.536373
iter 60 value 80.247226
iter 70 value 79.971014
iter 80 value 79.770475
iter 90 value 79.639852
iter 100 value 79.605515
final value 79.605515
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 110.862902
iter 10 value 94.635532
iter 20 value 91.571284
iter 30 value 85.745280
iter 40 value 85.534116
iter 50 value 84.562251
iter 60 value 83.646826
iter 70 value 81.274620
iter 80 value 80.293906
iter 90 value 79.793973
iter 100 value 79.666583
final value 79.666583
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 124.811061
iter 10 value 101.671207
iter 20 value 94.974659
iter 30 value 88.938239
iter 40 value 85.291825
iter 50 value 84.817687
iter 60 value 84.630708
iter 70 value 83.384072
iter 80 value 81.377671
iter 90 value 80.888109
iter 100 value 80.740848
final value 80.740848
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.044139
iter 10 value 94.513416
iter 20 value 93.520944
iter 30 value 88.739125
iter 40 value 87.096729
iter 50 value 85.362886
iter 60 value 84.680508
iter 70 value 84.252144
iter 80 value 81.632308
iter 90 value 81.183764
iter 100 value 80.546274
final value 80.546274
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.327229
iter 10 value 94.252832
iter 20 value 85.976496
iter 30 value 85.111563
iter 40 value 81.373969
iter 50 value 80.812610
iter 60 value 80.498124
iter 70 value 80.245553
iter 80 value 79.395505
iter 90 value 79.304925
iter 100 value 79.226251
final value 79.226251
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.421839
final value 94.486069
converged
Fitting Repeat 2
# weights: 103
initial value 105.780393
iter 10 value 94.486244
iter 20 value 94.479845
iter 30 value 94.165853
iter 30 value 94.165853
iter 30 value 94.165852
final value 94.165852
converged
Fitting Repeat 3
# weights: 103
initial value 108.411132
final value 94.485869
converged
Fitting Repeat 4
# weights: 103
initial value 96.461589
final value 94.485843
converged
Fitting Repeat 5
# weights: 103
initial value 98.219897
final value 94.485844
converged
Fitting Repeat 1
# weights: 305
initial value 118.771424
iter 10 value 94.489079
iter 20 value 94.272795
iter 30 value 93.368464
iter 40 value 93.283312
iter 50 value 87.384009
iter 60 value 87.183055
iter 70 value 86.568766
iter 80 value 86.327319
iter 90 value 83.150480
iter 100 value 80.242027
final value 80.242027
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 97.379134
iter 10 value 94.170403
iter 20 value 94.159251
iter 30 value 92.188625
iter 40 value 83.044297
iter 50 value 83.026155
final value 83.026136
converged
Fitting Repeat 3
# weights: 305
initial value 99.874958
iter 10 value 94.489156
iter 20 value 94.474973
iter 30 value 88.629322
iter 40 value 87.746633
iter 50 value 87.742907
iter 60 value 87.742378
iter 70 value 84.968972
iter 80 value 84.966762
iter 90 value 84.966188
iter 90 value 84.966187
iter 90 value 84.966187
final value 84.966187
converged
Fitting Repeat 4
# weights: 305
initial value 98.984487
iter 10 value 93.976371
iter 20 value 92.976470
iter 30 value 87.045654
iter 40 value 87.038425
iter 50 value 86.976962
iter 60 value 86.596253
iter 70 value 86.585185
iter 80 value 86.353808
final value 86.353715
converged
Fitting Repeat 5
# weights: 305
initial value 93.838050
iter 10 value 91.588223
iter 20 value 91.554397
iter 30 value 91.552516
iter 40 value 90.825169
iter 50 value 90.765292
final value 90.764499
converged
Fitting Repeat 1
# weights: 507
initial value 110.517921
iter 10 value 94.386504
iter 20 value 94.362982
iter 30 value 94.338085
iter 40 value 84.934344
iter 50 value 83.636709
iter 60 value 81.662163
iter 70 value 81.460351
iter 80 value 81.454962
iter 90 value 81.454144
iter 100 value 81.409704
final value 81.409704
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 96.444527
iter 10 value 94.362156
iter 20 value 94.355585
iter 30 value 93.917275
iter 40 value 86.477032
iter 50 value 86.271621
iter 60 value 86.251645
iter 70 value 86.250571
final value 86.250466
converged
Fitting Repeat 3
# weights: 507
initial value 107.834357
iter 10 value 94.362623
iter 20 value 94.068329
iter 30 value 93.687553
iter 40 value 93.533285
iter 50 value 85.772308
iter 60 value 79.467383
iter 70 value 78.423651
iter 80 value 78.211047
iter 90 value 78.172056
iter 100 value 78.042432
final value 78.042432
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 95.918940
iter 10 value 94.486262
iter 20 value 94.186232
iter 30 value 88.726153
iter 40 value 86.478809
final value 86.353170
converged
Fitting Repeat 5
# weights: 507
initial value 95.316419
iter 10 value 94.492473
iter 20 value 93.483352
iter 30 value 93.164152
iter 40 value 85.588194
iter 50 value 84.734724
iter 60 value 84.708177
iter 70 value 84.707527
iter 80 value 84.707399
iter 90 value 84.532234
iter 100 value 81.698104
final value 81.698104
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.910184
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 101.759596
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.027357
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.243101
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.169962
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.145066
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.542607
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.906807
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 120.119756
iter 10 value 94.484211
iter 10 value 94.484211
iter 10 value 94.484211
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 108.124758
iter 10 value 77.962850
iter 20 value 77.806632
iter 30 value 77.803940
final value 77.803932
converged
Fitting Repeat 1
# weights: 507
initial value 100.960049
final value 94.330997
converged
Fitting Repeat 2
# weights: 507
initial value 111.751080
iter 10 value 94.427841
iter 20 value 94.376534
final value 94.374883
converged
Fitting Repeat 3
# weights: 507
initial value 124.163163
iter 10 value 94.388015
iter 20 value 93.353948
iter 30 value 91.421364
iter 40 value 77.820849
iter 50 value 77.793338
iter 60 value 77.787829
final value 77.787733
converged
Fitting Repeat 4
# weights: 507
initial value 102.387642
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 109.508461
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.601679
iter 10 value 94.490892
iter 20 value 88.963186
iter 30 value 86.680101
iter 40 value 80.629142
iter 50 value 79.596059
iter 60 value 79.484267
iter 70 value 79.430758
iter 80 value 79.327281
iter 90 value 79.261492
iter 100 value 79.214482
final value 79.214482
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.071891
iter 10 value 94.335982
iter 20 value 89.678207
iter 30 value 84.439494
iter 40 value 80.026913
iter 50 value 79.557912
iter 60 value 79.464374
iter 70 value 79.441382
iter 80 value 79.351159
iter 90 value 79.241196
iter 100 value 79.214467
final value 79.214467
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.626503
iter 10 value 93.565651
iter 20 value 80.199738
iter 30 value 79.652477
iter 40 value 79.483617
iter 50 value 79.313723
iter 60 value 79.268578
iter 60 value 79.268577
iter 60 value 79.268577
final value 79.268577
converged
Fitting Repeat 4
# weights: 103
initial value 103.905435
iter 10 value 94.492637
iter 20 value 94.401284
iter 30 value 92.075590
iter 40 value 90.059161
iter 50 value 81.850920
iter 60 value 79.638853
iter 70 value 79.394128
iter 80 value 79.303621
iter 90 value 79.297030
final value 79.297026
converged
Fitting Repeat 5
# weights: 103
initial value 100.755385
iter 10 value 94.407112
iter 20 value 92.731044
iter 30 value 90.922598
iter 40 value 85.576742
iter 50 value 84.170096
iter 60 value 83.205700
iter 70 value 80.204005
iter 80 value 80.056228
iter 90 value 80.054087
iter 100 value 80.041732
final value 80.041732
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 110.507025
iter 10 value 94.133635
iter 20 value 83.093829
iter 30 value 79.938947
iter 40 value 79.492164
iter 50 value 79.181909
iter 60 value 79.087136
iter 70 value 78.005942
iter 80 value 77.396254
iter 90 value 77.248401
iter 100 value 77.169928
final value 77.169928
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.170970
iter 10 value 94.324504
iter 20 value 86.282856
iter 30 value 84.461516
iter 40 value 84.188787
iter 50 value 84.079935
iter 60 value 83.754721
iter 70 value 82.168565
iter 80 value 80.822834
iter 90 value 78.858952
iter 100 value 78.127078
final value 78.127078
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.748972
iter 10 value 96.524438
iter 20 value 84.062399
iter 30 value 82.995400
iter 40 value 79.455807
iter 50 value 78.897642
iter 60 value 78.763708
iter 70 value 78.756838
iter 80 value 78.572893
iter 90 value 78.324289
iter 100 value 78.288132
final value 78.288132
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.629271
iter 10 value 94.684220
iter 20 value 94.432140
iter 30 value 85.271744
iter 40 value 84.253410
iter 50 value 83.860224
iter 60 value 83.660880
iter 70 value 79.016449
iter 80 value 77.942230
iter 90 value 77.392973
iter 100 value 77.297941
final value 77.297941
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.997792
iter 10 value 94.572882
iter 20 value 91.545685
iter 30 value 85.531369
iter 40 value 82.679993
iter 50 value 81.356482
iter 60 value 79.717946
iter 70 value 79.132470
iter 80 value 79.032582
iter 90 value 78.546148
iter 100 value 77.870078
final value 77.870078
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.182852
iter 10 value 94.189162
iter 20 value 82.207305
iter 30 value 79.462398
iter 40 value 79.224230
iter 50 value 79.057902
iter 60 value 78.947353
iter 70 value 78.821573
iter 80 value 77.910286
iter 90 value 77.769515
iter 100 value 77.367994
final value 77.367994
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.636603
iter 10 value 94.313316
iter 20 value 80.422765
iter 30 value 79.375010
iter 40 value 79.224254
iter 50 value 79.074962
iter 60 value 78.962262
iter 70 value 78.803721
iter 80 value 77.762422
iter 90 value 77.405115
iter 100 value 77.362780
final value 77.362780
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.611381
iter 10 value 94.363238
iter 20 value 89.847696
iter 30 value 81.968654
iter 40 value 80.729753
iter 50 value 79.297931
iter 60 value 79.140573
iter 70 value 79.023971
iter 80 value 78.875882
iter 90 value 78.765696
iter 100 value 78.632857
final value 78.632857
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.891652
iter 10 value 93.657825
iter 20 value 80.892394
iter 30 value 79.191563
iter 40 value 78.533081
iter 50 value 78.277108
iter 60 value 77.625007
iter 70 value 77.407975
iter 80 value 77.325129
iter 90 value 77.250949
iter 100 value 77.112498
final value 77.112498
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.014876
iter 10 value 94.514704
iter 20 value 94.317405
iter 30 value 93.727599
iter 40 value 80.077231
iter 50 value 78.546393
iter 60 value 78.457937
iter 70 value 78.339561
iter 80 value 78.225377
iter 90 value 77.666584
iter 100 value 77.347905
final value 77.347905
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.147032
final value 94.485893
converged
Fitting Repeat 2
# weights: 103
initial value 98.716134
final value 94.485771
converged
Fitting Repeat 3
# weights: 103
initial value 95.050871
iter 10 value 94.487075
final value 94.485366
converged
Fitting Repeat 4
# weights: 103
initial value 100.961332
iter 10 value 94.485797
iter 20 value 94.480439
iter 30 value 94.427455
iter 40 value 87.181785
iter 50 value 84.389009
iter 60 value 84.292874
iter 70 value 84.261193
final value 84.261175
converged
Fitting Repeat 5
# weights: 103
initial value 96.078507
final value 94.485927
converged
Fitting Repeat 1
# weights: 305
initial value 95.673407
iter 10 value 94.489059
iter 20 value 94.415185
iter 30 value 93.939766
iter 40 value 93.939565
iter 50 value 93.939423
final value 93.939420
converged
Fitting Repeat 2
# weights: 305
initial value 103.646053
iter 10 value 90.730474
iter 20 value 89.041461
iter 30 value 88.936152
iter 40 value 88.929116
iter 50 value 88.925165
iter 60 value 88.925007
final value 88.924993
converged
Fitting Repeat 3
# weights: 305
initial value 99.009846
iter 10 value 92.619636
iter 20 value 92.617646
iter 30 value 87.605407
iter 40 value 87.602208
iter 50 value 87.433077
iter 60 value 85.079776
iter 70 value 85.030850
iter 80 value 85.024349
iter 90 value 82.769134
iter 100 value 81.854032
final value 81.854032
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 95.236742
iter 10 value 94.488509
iter 20 value 94.374371
iter 30 value 85.324411
iter 40 value 77.390530
iter 50 value 77.223433
iter 60 value 77.091425
iter 70 value 77.015655
iter 80 value 77.015096
final value 77.015003
converged
Fitting Repeat 5
# weights: 305
initial value 125.187681
iter 10 value 93.943807
iter 20 value 93.435242
iter 30 value 92.616545
iter 40 value 92.615251
iter 50 value 92.227353
iter 60 value 78.009548
iter 70 value 77.807384
iter 80 value 77.543082
iter 90 value 77.253416
iter 100 value 77.241483
final value 77.241483
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 99.186203
iter 10 value 94.474990
iter 20 value 94.410355
iter 30 value 82.480370
final value 82.471019
converged
Fitting Repeat 2
# weights: 507
initial value 104.794706
iter 10 value 94.475462
iter 20 value 94.471237
iter 30 value 91.280613
iter 40 value 89.042868
iter 50 value 89.037278
iter 60 value 89.037164
iter 70 value 89.034585
iter 80 value 84.909529
iter 90 value 77.819734
iter 100 value 77.749132
final value 77.749132
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 97.800476
iter 10 value 83.383868
iter 20 value 77.322114
iter 30 value 77.160404
iter 40 value 77.033797
iter 50 value 77.031100
iter 60 value 77.024363
iter 70 value 76.953585
iter 80 value 76.738511
iter 90 value 76.631833
iter 100 value 76.615940
final value 76.615940
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 99.166296
iter 10 value 94.475374
iter 20 value 94.467339
final value 94.466843
converged
Fitting Repeat 5
# weights: 507
initial value 99.901839
iter 10 value 94.456601
iter 20 value 94.450664
iter 30 value 82.626039
iter 40 value 82.476841
iter 50 value 82.475205
iter 60 value 79.077143
iter 70 value 77.693126
iter 80 value 77.502250
iter 90 value 77.501938
iter 100 value 77.440849
final value 77.440849
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.474386
iter 10 value 94.429590
iter 20 value 94.428838
iter 30 value 94.354593
final value 94.354287
converged
Fitting Repeat 2
# weights: 103
initial value 95.444176
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.847177
iter 10 value 89.857741
iter 20 value 89.769339
final value 89.768942
converged
Fitting Repeat 4
# weights: 103
initial value 94.958660
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.768940
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 94.932338
iter 10 value 89.988413
iter 20 value 89.357180
final value 89.356980
converged
Fitting Repeat 2
# weights: 305
initial value 107.261614
iter 10 value 94.362663
final value 94.361905
converged
Fitting Repeat 3
# weights: 305
initial value 96.195732
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 109.981465
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 96.227928
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 97.973707
final value 94.466823
converged
Fitting Repeat 2
# weights: 507
initial value 95.782230
final value 94.436781
converged
Fitting Repeat 3
# weights: 507
initial value 100.181445
iter 10 value 93.466290
iter 20 value 86.671272
final value 85.985695
converged
Fitting Repeat 4
# weights: 507
initial value 103.536695
iter 10 value 92.156459
final value 92.152918
converged
Fitting Repeat 5
# weights: 507
initial value 100.903617
final value 94.466823
converged
Fitting Repeat 1
# weights: 103
initial value 101.110606
iter 10 value 94.487121
iter 20 value 93.837715
iter 30 value 91.294326
iter 40 value 87.613717
iter 50 value 86.204963
iter 60 value 85.023014
iter 70 value 84.741190
final value 84.740344
converged
Fitting Repeat 2
# weights: 103
initial value 97.327107
iter 10 value 94.400578
iter 20 value 93.787106
iter 30 value 85.041536
iter 40 value 83.682097
iter 50 value 82.843787
iter 60 value 82.476996
iter 70 value 82.376322
iter 80 value 82.327257
final value 82.327254
converged
Fitting Repeat 3
# weights: 103
initial value 96.364608
iter 10 value 94.540715
iter 20 value 94.488549
iter 30 value 87.660475
iter 40 value 85.929009
iter 50 value 85.722318
iter 60 value 85.559821
iter 70 value 84.932796
iter 80 value 84.787931
iter 90 value 84.751551
final value 84.740344
converged
Fitting Repeat 4
# weights: 103
initial value 100.413329
iter 10 value 94.490774
iter 20 value 94.488494
iter 30 value 93.291192
iter 40 value 90.160081
iter 50 value 87.240072
iter 60 value 85.239853
iter 70 value 83.784563
iter 80 value 83.428464
iter 90 value 83.407507
iter 100 value 82.327664
final value 82.327664
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 107.570004
iter 10 value 94.452725
iter 20 value 92.095761
iter 30 value 91.117930
iter 40 value 89.949296
iter 50 value 89.723944
iter 60 value 89.700332
iter 70 value 85.292847
iter 80 value 83.996872
iter 90 value 83.641115
iter 100 value 82.887748
final value 82.887748
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 99.858715
iter 10 value 94.481328
iter 20 value 94.225757
iter 30 value 90.278970
iter 40 value 85.256047
iter 50 value 84.121043
iter 60 value 83.187807
iter 70 value 82.835648
iter 80 value 82.571195
iter 90 value 82.399950
iter 100 value 82.216882
final value 82.216882
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.435594
iter 10 value 94.486743
iter 20 value 94.151520
iter 30 value 92.556960
iter 40 value 87.577217
iter 50 value 83.910856
iter 60 value 83.143490
iter 70 value 82.851328
iter 80 value 82.575993
iter 90 value 82.189530
iter 100 value 81.831565
final value 81.831565
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.157400
iter 10 value 94.539758
iter 20 value 90.805886
iter 30 value 84.145101
iter 40 value 82.498446
iter 50 value 81.645479
iter 60 value 80.963086
iter 70 value 80.468923
iter 80 value 80.097754
iter 90 value 79.860895
iter 100 value 79.763303
final value 79.763303
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 117.616731
iter 10 value 94.183629
iter 20 value 91.284388
iter 30 value 89.557493
iter 40 value 83.368851
iter 50 value 81.896213
iter 60 value 81.538082
iter 70 value 81.254970
iter 80 value 81.047008
iter 90 value 80.587948
iter 100 value 80.345931
final value 80.345931
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.624777
iter 10 value 92.736644
iter 20 value 86.860523
iter 30 value 84.948877
iter 40 value 82.181987
iter 50 value 81.614063
iter 60 value 81.315903
iter 70 value 80.899787
iter 80 value 80.600095
iter 90 value 80.522589
iter 100 value 80.419714
final value 80.419714
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.469132
iter 10 value 94.493945
iter 20 value 92.394491
iter 30 value 89.000075
iter 40 value 85.042948
iter 50 value 82.742092
iter 60 value 81.637064
iter 70 value 81.559320
iter 80 value 81.223992
iter 90 value 80.811974
iter 100 value 80.007215
final value 80.007215
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.909818
iter 10 value 97.982942
iter 20 value 96.133383
iter 30 value 94.711109
iter 40 value 84.321151
iter 50 value 82.348490
iter 60 value 81.486899
iter 70 value 80.838337
iter 80 value 80.431328
iter 90 value 80.219194
iter 100 value 79.916867
final value 79.916867
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.961050
iter 10 value 94.007571
iter 20 value 84.001190
iter 30 value 83.200076
iter 40 value 82.469673
iter 50 value 81.839918
iter 60 value 81.691904
iter 70 value 81.571106
iter 80 value 81.241865
iter 90 value 81.116202
iter 100 value 80.672813
final value 80.672813
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.337831
iter 10 value 94.937185
iter 20 value 94.475119
iter 30 value 93.891714
iter 40 value 90.808045
iter 50 value 87.357176
iter 60 value 85.911113
iter 70 value 83.720837
iter 80 value 82.610580
iter 90 value 82.518808
iter 100 value 82.415142
final value 82.415142
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 121.751378
iter 10 value 95.347476
iter 20 value 93.243839
iter 30 value 92.152818
iter 40 value 89.725359
iter 50 value 88.088453
iter 60 value 87.147273
iter 70 value 83.065263
iter 80 value 81.550611
iter 90 value 80.602713
iter 100 value 80.298919
final value 80.298919
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.041832
final value 94.411325
converged
Fitting Repeat 2
# weights: 103
initial value 100.126057
final value 94.485892
converged
Fitting Repeat 3
# weights: 103
initial value 97.746382
final value 94.485872
converged
Fitting Repeat 4
# weights: 103
initial value 103.062532
final value 94.485697
converged
Fitting Repeat 5
# weights: 103
initial value 98.160709
iter 10 value 94.485942
final value 94.484253
converged
Fitting Repeat 1
# weights: 305
initial value 107.530743
iter 10 value 94.489326
iter 20 value 94.484224
iter 30 value 90.044395
iter 40 value 82.994988
iter 50 value 81.945527
iter 60 value 81.832712
iter 70 value 81.810571
final value 81.810547
converged
Fitting Repeat 2
# weights: 305
initial value 101.577620
iter 10 value 94.472088
iter 20 value 94.460605
iter 30 value 88.114010
iter 40 value 87.699937
iter 50 value 87.699160
iter 50 value 87.699160
final value 87.699160
converged
Fitting Repeat 3
# weights: 305
initial value 94.982222
iter 10 value 94.488637
iter 20 value 94.470976
final value 94.467232
converged
Fitting Repeat 4
# weights: 305
initial value 97.228691
iter 10 value 94.489215
iter 20 value 94.478458
iter 30 value 91.684991
iter 40 value 87.262543
iter 50 value 87.259221
iter 50 value 87.259221
iter 50 value 87.259220
final value 87.259220
converged
Fitting Repeat 5
# weights: 305
initial value 102.934809
iter 10 value 94.489140
iter 20 value 94.482641
iter 30 value 94.295390
iter 40 value 91.789385
iter 50 value 87.863428
iter 60 value 87.304841
iter 70 value 87.296599
iter 80 value 87.289863
iter 90 value 87.283555
iter 100 value 86.738924
final value 86.738924
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.230874
iter 10 value 94.475210
iter 20 value 94.470865
iter 30 value 94.116498
iter 40 value 88.815038
iter 50 value 88.545236
iter 60 value 88.542044
iter 70 value 88.541271
iter 80 value 88.349670
final value 88.349473
converged
Fitting Repeat 2
# weights: 507
initial value 102.955005
iter 10 value 94.492048
iter 20 value 94.484264
iter 30 value 90.948887
iter 40 value 83.362368
iter 50 value 83.350741
iter 60 value 83.323587
iter 70 value 83.094314
iter 80 value 82.530979
iter 90 value 82.500745
iter 100 value 82.497865
final value 82.497865
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 124.091035
iter 10 value 93.710813
iter 20 value 90.584072
iter 30 value 89.577964
iter 40 value 85.670383
iter 50 value 82.674985
iter 60 value 82.194596
final value 82.194272
converged
Fitting Repeat 4
# weights: 507
initial value 99.348492
iter 10 value 94.493457
iter 20 value 94.482935
iter 30 value 93.899252
iter 40 value 85.886819
iter 50 value 85.422057
iter 60 value 85.358288
iter 70 value 84.980307
iter 80 value 82.142117
iter 90 value 81.078933
iter 100 value 81.006113
final value 81.006113
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.343884
iter 10 value 94.455409
iter 20 value 94.451028
iter 30 value 88.738909
iter 40 value 86.565697
iter 50 value 84.352389
iter 60 value 81.419121
iter 70 value 79.416195
iter 80 value 79.104972
iter 90 value 79.075661
iter 100 value 79.014252
final value 79.014252
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 127.056633
iter 10 value 117.895493
iter 20 value 117.763658
iter 30 value 107.003754
iter 40 value 106.787340
iter 50 value 106.657909
final value 106.655400
converged
Fitting Repeat 2
# weights: 305
initial value 125.711003
iter 10 value 117.870967
iter 20 value 117.866071
iter 20 value 117.866070
iter 20 value 117.866069
final value 117.866069
converged
Fitting Repeat 3
# weights: 305
initial value 150.894680
iter 10 value 117.895036
iter 20 value 117.890329
iter 30 value 117.868709
iter 40 value 114.512744
iter 50 value 112.933615
iter 60 value 112.933061
iter 70 value 107.602284
iter 80 value 106.970269
iter 90 value 106.781182
iter 100 value 106.778107
final value 106.778107
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 138.991390
iter 10 value 110.751920
iter 20 value 109.312086
iter 30 value 106.935849
iter 40 value 104.949429
iter 50 value 104.940612
iter 60 value 104.939182
iter 70 value 104.937147
final value 104.936746
converged
Fitting Repeat 5
# weights: 305
initial value 139.124111
iter 10 value 117.763881
iter 20 value 117.755901
iter 30 value 107.265480
iter 40 value 106.898980
iter 50 value 106.898361
final value 106.898357
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
RUNIT TEST PROTOCOL -- Tue Mar 10 00:09:39 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
41.236 0.837 87.403
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.283 | 0.581 | 33.897 | |
| FreqInteractors | 0.419 | 0.024 | 0.443 | |
| calculateAAC | 0.031 | 0.000 | 0.032 | |
| calculateAutocor | 0.268 | 0.019 | 0.288 | |
| calculateCTDC | 0.076 | 0.003 | 0.079 | |
| calculateCTDD | 0.473 | 0.002 | 0.475 | |
| calculateCTDT | 0.143 | 0.001 | 0.144 | |
| calculateCTriad | 0.381 | 0.010 | 0.391 | |
| calculateDC | 0.084 | 0.007 | 0.091 | |
| calculateF | 0.300 | 0.001 | 0.300 | |
| calculateKSAAP | 0.102 | 0.004 | 0.106 | |
| calculateQD_Sm | 1.853 | 0.023 | 1.876 | |
| calculateTC | 1.506 | 0.152 | 1.658 | |
| calculateTC_Sm | 0.291 | 0.032 | 0.323 | |
| corr_plot | 35.199 | 0.484 | 35.714 | |
| enrichfindP | 0.590 | 0.040 | 10.557 | |
| enrichfind_hp | 0.049 | 0.002 | 2.515 | |
| enrichplot | 0.503 | 0.003 | 0.507 | |
| filter_missing_values | 0.001 | 0.001 | 0.001 | |
| getFASTA | 0.368 | 0.006 | 3.465 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.000 | 0.001 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.002 | |
| plotPPI | 0.077 | 0.002 | 0.080 | |
| pred_ensembel | 12.923 | 0.160 | 11.767 | |
| var_imp | 33.834 | 0.496 | 34.335 | |