| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-13 11:33 -0400 (Fri, 13 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4819 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1009/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-13 00:12:45 -0400 (Fri, 13 Mar 2026) |
| EndedAt: 2026-03-13 00:27:57 -0400 (Fri, 13 Mar 2026) |
| EllapsedTime: 911.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-13 04:12:46 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 38.179 0.581 38.837
corr_plot 35.483 0.320 35.831
FSmethod 33.863 0.619 34.487
pred_ensembel 12.923 0.103 11.713
enrichfindP 0.567 0.038 8.997
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 106.092929
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 100.299554
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.108987
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.420789
final value 94.038251
converged
Fitting Repeat 5
# weights: 103
initial value 98.103527
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 96.321184
final value 94.038251
converged
Fitting Repeat 2
# weights: 305
initial value 100.577853
iter 10 value 94.040200
iter 20 value 94.018678
final value 94.008696
converged
Fitting Repeat 3
# weights: 305
initial value 96.792911
final value 94.038251
converged
Fitting Repeat 4
# weights: 305
initial value 96.069035
final value 94.038251
converged
Fitting Repeat 5
# weights: 305
initial value 116.387355
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 97.289006
iter 10 value 93.935550
iter 20 value 93.934349
final value 93.934347
converged
Fitting Repeat 2
# weights: 507
initial value 99.673121
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 106.575734
iter 10 value 93.030173
iter 20 value 88.603150
iter 30 value 88.591889
final value 88.591840
converged
Fitting Repeat 4
# weights: 507
initial value 102.097424
iter 10 value 93.659915
final value 93.656595
converged
Fitting Repeat 5
# weights: 507
initial value 96.533370
iter 10 value 93.884871
iter 20 value 86.341291
iter 30 value 86.256827
iter 40 value 86.255122
iter 40 value 86.255121
iter 40 value 86.255121
final value 86.255121
converged
Fitting Repeat 1
# weights: 103
initial value 98.850343
iter 10 value 93.990861
iter 20 value 88.651867
iter 30 value 87.928080
iter 40 value 86.757987
iter 50 value 86.518236
iter 60 value 86.459175
iter 70 value 86.412484
iter 80 value 86.282174
iter 90 value 86.175873
final value 86.175869
converged
Fitting Repeat 2
# weights: 103
initial value 101.189490
iter 10 value 94.054862
iter 10 value 94.054862
iter 20 value 94.014744
iter 30 value 93.432719
iter 40 value 92.903584
iter 50 value 92.837267
iter 60 value 91.763131
iter 70 value 91.253105
iter 80 value 91.230143
iter 90 value 91.190597
final value 91.186686
converged
Fitting Repeat 3
# weights: 103
initial value 105.143159
iter 10 value 94.317258
iter 20 value 94.054727
iter 30 value 92.843858
iter 40 value 89.848786
iter 50 value 89.452108
iter 60 value 88.923158
iter 70 value 86.677976
iter 80 value 86.408653
iter 90 value 86.389410
iter 100 value 86.384037
final value 86.384037
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.643232
iter 10 value 94.031794
iter 20 value 90.402803
iter 30 value 88.985478
iter 40 value 87.373563
iter 50 value 86.699965
iter 60 value 86.629858
iter 70 value 86.586600
iter 80 value 86.466727
iter 90 value 86.391994
iter 100 value 86.381004
final value 86.381004
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 110.251031
iter 10 value 94.038007
iter 20 value 91.073426
iter 30 value 90.208771
iter 40 value 88.351463
iter 50 value 87.234514
iter 60 value 86.391984
iter 70 value 86.381006
final value 86.381004
converged
Fitting Repeat 1
# weights: 305
initial value 114.871903
iter 10 value 94.891376
iter 20 value 93.744481
iter 30 value 93.709495
iter 40 value 92.910699
iter 50 value 89.126902
iter 60 value 86.467903
iter 70 value 86.245522
iter 80 value 86.084325
iter 90 value 84.911828
iter 100 value 84.737067
final value 84.737067
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 117.211463
iter 10 value 94.036290
iter 20 value 92.283698
iter 30 value 89.491011
iter 40 value 88.153117
iter 50 value 85.107402
iter 60 value 84.551805
iter 70 value 84.079606
iter 80 value 83.407368
iter 90 value 82.983385
iter 100 value 82.921563
final value 82.921563
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 126.437997
iter 10 value 94.002925
iter 20 value 92.382074
iter 30 value 91.471608
iter 40 value 91.386903
iter 50 value 90.626467
iter 60 value 88.307649
iter 70 value 86.401719
iter 80 value 85.551313
iter 90 value 85.086491
iter 100 value 83.590712
final value 83.590712
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.747735
iter 10 value 91.536532
iter 20 value 86.077168
iter 30 value 85.423029
iter 40 value 85.107080
iter 50 value 84.685331
iter 60 value 84.425570
iter 70 value 84.250860
iter 80 value 83.957743
iter 90 value 83.884264
iter 100 value 83.846171
final value 83.846171
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 120.580917
iter 10 value 95.762111
iter 20 value 93.862473
iter 30 value 93.217940
iter 40 value 92.936223
iter 50 value 85.844929
iter 60 value 85.524160
iter 70 value 85.399892
iter 80 value 85.181944
iter 90 value 84.776045
iter 100 value 84.613632
final value 84.613632
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 130.477273
iter 10 value 94.409760
iter 20 value 94.069552
iter 30 value 93.887642
iter 40 value 87.547999
iter 50 value 87.244953
iter 60 value 85.842607
iter 70 value 84.862566
iter 80 value 83.378549
iter 90 value 82.717353
iter 100 value 82.506355
final value 82.506355
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.797174
iter 10 value 96.730655
iter 20 value 94.083447
iter 30 value 94.053662
iter 40 value 89.204999
iter 50 value 86.591422
iter 60 value 86.214290
iter 70 value 85.681014
iter 80 value 84.710357
iter 90 value 83.812840
iter 100 value 83.493503
final value 83.493503
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.435391
iter 10 value 94.492356
iter 20 value 94.268885
iter 30 value 88.046469
iter 40 value 87.608014
iter 50 value 87.026282
iter 60 value 86.064579
iter 70 value 85.804289
iter 80 value 85.733891
iter 90 value 85.450975
iter 100 value 84.875356
final value 84.875356
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.808706
iter 10 value 94.512942
iter 20 value 93.900675
iter 30 value 92.242097
iter 40 value 91.462256
iter 50 value 91.259433
iter 60 value 85.676777
iter 70 value 84.016141
iter 80 value 83.720561
iter 90 value 83.044534
iter 100 value 82.654775
final value 82.654775
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.950457
iter 10 value 94.195264
iter 20 value 93.958841
iter 30 value 89.980425
iter 40 value 88.026541
iter 50 value 86.525836
iter 60 value 85.295467
iter 70 value 84.597219
iter 80 value 83.881312
iter 90 value 83.647487
iter 100 value 83.622065
final value 83.622065
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.500754
final value 94.040170
converged
Fitting Repeat 2
# weights: 103
initial value 107.891937
final value 94.054632
converged
Fitting Repeat 3
# weights: 103
initial value 103.292880
final value 94.054456
converged
Fitting Repeat 4
# weights: 103
initial value 95.390656
iter 10 value 94.054475
final value 94.052921
converged
Fitting Repeat 5
# weights: 103
initial value 94.178077
iter 10 value 94.054335
iter 20 value 94.052914
iter 20 value 94.052914
iter 20 value 94.052914
final value 94.052914
converged
Fitting Repeat 1
# weights: 305
initial value 107.250666
iter 10 value 94.057608
iter 20 value 94.053081
iter 30 value 93.396947
iter 40 value 91.776955
iter 50 value 91.670809
iter 60 value 89.270589
iter 70 value 89.206198
iter 80 value 89.187225
iter 90 value 89.183499
iter 100 value 89.182803
final value 89.182803
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 116.916045
iter 10 value 94.042353
final value 94.040196
converged
Fitting Repeat 3
# weights: 305
initial value 96.333987
iter 10 value 94.058247
iter 20 value 94.049970
iter 30 value 92.159086
iter 40 value 86.159610
iter 50 value 82.885761
iter 60 value 82.358084
iter 70 value 81.594388
iter 80 value 81.477574
iter 90 value 81.176468
iter 100 value 81.125438
final value 81.125438
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 123.670747
iter 10 value 94.057826
iter 20 value 94.047338
iter 30 value 94.038488
final value 94.038472
converged
Fitting Repeat 5
# weights: 305
initial value 94.766865
iter 10 value 94.057432
iter 20 value 94.041092
iter 30 value 94.039496
iter 40 value 93.794516
iter 50 value 92.186726
iter 60 value 90.572498
iter 70 value 90.365882
iter 80 value 90.352116
final value 90.352021
converged
Fitting Repeat 1
# weights: 507
initial value 109.452268
iter 10 value 94.061206
iter 20 value 92.741822
iter 30 value 91.735888
iter 40 value 91.735717
final value 91.735715
converged
Fitting Repeat 2
# weights: 507
initial value 110.782973
iter 10 value 89.421859
iter 20 value 87.665016
iter 30 value 87.609498
iter 40 value 87.591920
iter 50 value 85.836546
iter 60 value 85.788354
iter 70 value 85.597118
iter 80 value 84.849688
iter 90 value 82.865369
iter 100 value 82.522591
final value 82.522591
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 96.379578
iter 10 value 93.658252
iter 20 value 93.655505
iter 30 value 93.654581
iter 40 value 93.650123
final value 93.649849
converged
Fitting Repeat 4
# weights: 507
initial value 97.196623
iter 10 value 94.060654
iter 20 value 94.048134
iter 30 value 94.043015
iter 40 value 93.369038
iter 50 value 86.385392
iter 60 value 86.357446
iter 70 value 86.298720
iter 80 value 86.258065
iter 90 value 84.797823
iter 100 value 84.674309
final value 84.674309
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.225178
iter 10 value 94.059968
iter 20 value 93.370051
iter 30 value 92.045716
iter 40 value 91.368289
iter 50 value 91.190140
iter 60 value 91.186639
final value 91.186542
converged
Fitting Repeat 1
# weights: 103
initial value 99.554650
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.036881
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.383930
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.366929
iter 10 value 88.580961
final value 88.555221
converged
Fitting Repeat 5
# weights: 103
initial value 102.986394
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 118.933780
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 108.773294
iter 10 value 94.071857
final value 94.071545
converged
Fitting Repeat 3
# weights: 305
initial value 100.954330
iter 10 value 91.854309
iter 20 value 90.342985
iter 30 value 90.341030
iter 30 value 90.341030
final value 90.341024
converged
Fitting Repeat 4
# weights: 305
initial value 98.589882
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 110.096908
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 96.184069
iter 10 value 88.965747
iter 20 value 86.086455
iter 30 value 86.036894
final value 86.036816
converged
Fitting Repeat 2
# weights: 507
initial value 101.202541
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 102.445431
iter 10 value 91.709551
iter 20 value 90.226712
iter 30 value 90.225439
iter 30 value 90.225438
iter 30 value 90.225438
final value 90.225438
converged
Fitting Repeat 4
# weights: 507
initial value 107.411477
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 97.351391
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 107.331345
iter 10 value 93.246185
iter 20 value 91.073589
iter 30 value 89.415329
iter 40 value 85.878854
iter 50 value 84.994040
iter 60 value 83.718983
iter 70 value 83.256012
iter 80 value 83.177652
iter 90 value 83.092948
iter 100 value 83.050249
final value 83.050249
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 105.559384
iter 10 value 94.341531
iter 20 value 94.327301
iter 30 value 93.812936
iter 40 value 91.389881
iter 50 value 89.141080
iter 60 value 87.897976
iter 70 value 87.702861
iter 80 value 82.236028
iter 90 value 81.688370
iter 100 value 81.560528
final value 81.560528
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.842413
iter 10 value 94.508345
iter 20 value 94.406508
iter 30 value 93.661682
iter 40 value 87.727271
iter 50 value 87.630349
iter 60 value 87.532997
iter 70 value 87.507100
iter 80 value 83.344813
iter 90 value 83.128499
iter 100 value 82.779988
final value 82.779988
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.108566
iter 10 value 94.488564
iter 20 value 94.480614
iter 30 value 94.313004
iter 40 value 90.702233
iter 50 value 87.987079
iter 60 value 86.337116
iter 70 value 83.823878
iter 80 value 83.042361
iter 90 value 82.836032
iter 100 value 81.932951
final value 81.932951
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 103.907882
iter 10 value 94.341761
iter 20 value 89.287558
iter 30 value 88.439851
iter 40 value 83.398133
iter 50 value 82.042325
iter 60 value 81.604477
iter 70 value 81.228675
iter 80 value 81.092478
final value 81.092453
converged
Fitting Repeat 1
# weights: 305
initial value 113.803943
iter 10 value 94.111863
iter 20 value 86.879802
iter 30 value 82.846776
iter 40 value 82.466365
iter 50 value 81.407907
iter 60 value 80.325741
iter 70 value 79.389832
iter 80 value 79.003001
iter 90 value 78.896430
iter 100 value 78.838089
final value 78.838089
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 123.676875
iter 10 value 94.407098
iter 20 value 89.730897
iter 30 value 86.326361
iter 40 value 85.277954
iter 50 value 83.740191
iter 60 value 82.833977
iter 70 value 82.057320
iter 80 value 81.478269
iter 90 value 81.155523
iter 100 value 81.097605
final value 81.097605
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 110.503375
iter 10 value 94.400342
iter 20 value 86.241746
iter 30 value 85.193678
iter 40 value 84.776489
iter 50 value 83.793427
iter 60 value 81.250151
iter 70 value 80.897915
iter 80 value 80.579907
iter 90 value 80.207262
iter 100 value 80.008768
final value 80.008768
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.187049
iter 10 value 94.316124
iter 20 value 91.616374
iter 30 value 83.448101
iter 40 value 81.036061
iter 50 value 80.421474
iter 60 value 79.929733
iter 70 value 79.521817
iter 80 value 79.458745
iter 90 value 79.374643
iter 100 value 79.207128
final value 79.207128
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 117.242021
iter 10 value 94.291246
iter 20 value 92.814277
iter 30 value 90.015409
iter 40 value 86.966029
iter 50 value 83.654488
iter 60 value 81.071535
iter 70 value 80.045917
iter 80 value 79.850946
iter 90 value 79.572928
iter 100 value 79.135464
final value 79.135464
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 125.608862
iter 10 value 94.001481
iter 20 value 91.773016
iter 30 value 86.088879
iter 40 value 84.326440
iter 50 value 83.443860
iter 60 value 83.290647
iter 70 value 83.202420
iter 80 value 83.121735
iter 90 value 81.373892
iter 100 value 80.885457
final value 80.885457
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.745616
iter 10 value 94.616703
iter 20 value 94.293901
iter 30 value 94.074987
iter 40 value 91.043230
iter 50 value 87.098278
iter 60 value 84.303217
iter 70 value 82.204896
iter 80 value 81.169222
iter 90 value 80.599340
iter 100 value 79.767376
final value 79.767376
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 109.256650
iter 10 value 95.100111
iter 20 value 90.021312
iter 30 value 85.693871
iter 40 value 85.142022
iter 50 value 84.641590
iter 60 value 83.305566
iter 70 value 82.350212
iter 80 value 81.831658
iter 90 value 81.430523
iter 100 value 80.531775
final value 80.531775
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.898089
iter 10 value 94.685689
iter 20 value 90.125529
iter 30 value 84.720422
iter 40 value 81.882268
iter 50 value 81.689930
iter 60 value 80.768659
iter 70 value 79.928265
iter 80 value 79.844373
iter 90 value 79.545071
iter 100 value 79.350595
final value 79.350595
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 126.955575
iter 10 value 97.542166
iter 20 value 91.011478
iter 30 value 85.797560
iter 40 value 84.374164
iter 50 value 81.896848
iter 60 value 80.667210
iter 70 value 80.336390
iter 80 value 79.956261
iter 90 value 79.624911
iter 100 value 79.467751
final value 79.467751
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.871336
final value 94.486368
converged
Fitting Repeat 2
# weights: 103
initial value 112.250373
iter 10 value 94.485868
iter 20 value 94.483918
iter 30 value 88.702785
iter 40 value 87.607753
iter 50 value 87.601593
iter 60 value 86.009666
iter 70 value 85.880765
final value 85.868164
converged
Fitting Repeat 3
# weights: 103
initial value 95.803255
final value 94.486022
converged
Fitting Repeat 4
# weights: 103
initial value 95.099401
final value 94.485806
converged
Fitting Repeat 5
# weights: 103
initial value 96.927763
final value 94.485766
converged
Fitting Repeat 1
# weights: 305
initial value 96.322170
iter 10 value 94.484730
final value 94.484728
converged
Fitting Repeat 2
# weights: 305
initial value 95.113936
iter 10 value 94.489003
iter 20 value 94.478295
iter 30 value 90.768604
iter 40 value 85.956428
iter 50 value 85.941862
iter 60 value 84.748183
iter 70 value 83.937387
iter 80 value 83.929158
final value 83.928677
converged
Fitting Repeat 3
# weights: 305
initial value 108.455577
iter 10 value 94.063372
iter 20 value 94.061457
iter 30 value 94.033048
iter 40 value 94.030121
iter 50 value 94.028144
iter 60 value 94.028012
final value 94.027963
converged
Fitting Repeat 4
# weights: 305
initial value 95.182435
iter 10 value 94.487438
iter 20 value 91.886985
iter 30 value 90.322315
iter 40 value 90.316149
iter 50 value 90.309686
iter 60 value 90.307483
iter 70 value 90.059347
iter 80 value 89.332594
iter 90 value 84.998252
iter 100 value 83.927460
final value 83.927460
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 94.806116
iter 10 value 94.489286
iter 20 value 94.484280
final value 94.484224
converged
Fitting Repeat 1
# weights: 507
initial value 99.223032
iter 10 value 94.283897
iter 20 value 94.279152
iter 30 value 94.275481
iter 40 value 88.441717
iter 50 value 86.256587
iter 60 value 86.095216
iter 70 value 85.474212
iter 80 value 84.785502
iter 90 value 84.714459
iter 100 value 84.544745
final value 84.544745
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.331916
iter 10 value 94.488839
iter 20 value 94.269813
iter 30 value 85.012026
iter 40 value 83.965921
iter 50 value 82.674831
iter 60 value 77.750156
iter 70 value 77.579517
iter 80 value 77.569974
iter 90 value 77.564522
iter 100 value 77.562611
final value 77.562611
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.579008
iter 10 value 94.491516
iter 20 value 94.117220
iter 30 value 93.045646
final value 93.045637
converged
Fitting Repeat 4
# weights: 507
initial value 95.088334
iter 10 value 87.271494
iter 20 value 87.182706
iter 30 value 86.552500
iter 40 value 86.471639
iter 50 value 86.242869
iter 60 value 86.229533
iter 70 value 86.227888
iter 80 value 86.227538
final value 86.227365
converged
Fitting Repeat 5
# weights: 507
initial value 103.279871
iter 10 value 94.283406
iter 20 value 94.238663
iter 30 value 94.205125
final value 94.204731
converged
Fitting Repeat 1
# weights: 103
initial value 102.025851
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 109.299572
final value 92.701658
converged
Fitting Repeat 3
# weights: 103
initial value 107.989171
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.568663
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 109.687129
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.874946
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 101.186408
final value 93.904720
converged
Fitting Repeat 3
# weights: 305
initial value 97.359629
iter 10 value 93.836171
final value 93.836066
converged
Fitting Repeat 4
# weights: 305
initial value 115.044471
iter 10 value 93.543416
iter 20 value 93.543204
iter 20 value 93.543203
final value 93.543203
converged
Fitting Repeat 5
# weights: 305
initial value 95.331739
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 97.283387
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 98.118506
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 102.439103
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 127.308943
final value 93.904720
converged
Fitting Repeat 5
# weights: 507
initial value 98.307210
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 106.998825
iter 10 value 93.682892
iter 20 value 85.730722
iter 30 value 84.641005
iter 40 value 84.115094
iter 50 value 82.148616
iter 60 value 81.719127
iter 70 value 81.561487
iter 80 value 81.415298
iter 90 value 81.355035
final value 81.346661
converged
Fitting Repeat 2
# weights: 103
initial value 106.886043
iter 10 value 94.299546
iter 20 value 93.944825
iter 30 value 87.009071
iter 40 value 86.493281
iter 50 value 80.879011
iter 60 value 80.274981
iter 70 value 78.709843
iter 80 value 78.034095
iter 90 value 77.896560
iter 100 value 77.808700
final value 77.808700
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.940597
iter 10 value 94.051574
iter 20 value 88.439684
iter 30 value 84.728756
iter 40 value 82.166366
iter 50 value 81.433065
iter 60 value 81.349493
iter 70 value 81.346664
final value 81.346661
converged
Fitting Repeat 4
# weights: 103
initial value 95.680716
iter 10 value 94.056273
iter 20 value 83.469182
iter 30 value 82.819543
iter 40 value 81.573165
iter 50 value 81.262320
iter 60 value 79.914296
iter 70 value 79.382428
iter 80 value 77.894817
iter 90 value 77.858908
iter 100 value 77.839864
final value 77.839864
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.111687
iter 10 value 94.057500
iter 20 value 91.577551
iter 30 value 85.283688
iter 40 value 82.653894
iter 50 value 82.256959
iter 60 value 82.097905
iter 70 value 81.989258
iter 80 value 81.376548
final value 81.346661
converged
Fitting Repeat 1
# weights: 305
initial value 107.331568
iter 10 value 94.239254
iter 20 value 93.756936
iter 30 value 93.548652
iter 40 value 87.962515
iter 50 value 86.979765
iter 60 value 86.336396
iter 70 value 82.950809
iter 80 value 82.335659
iter 90 value 81.744994
iter 100 value 81.265089
final value 81.265089
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.165246
iter 10 value 90.468439
iter 20 value 82.887287
iter 30 value 80.794341
iter 40 value 79.639917
iter 50 value 79.291650
iter 60 value 78.178806
iter 70 value 77.854387
iter 80 value 77.668733
iter 90 value 77.285171
iter 100 value 76.733454
final value 76.733454
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 116.154879
iter 10 value 93.874143
iter 20 value 86.704924
iter 30 value 85.611788
iter 40 value 81.805836
iter 50 value 78.547725
iter 60 value 77.712640
iter 70 value 77.082444
iter 80 value 76.942540
iter 90 value 76.914102
iter 100 value 76.882016
final value 76.882016
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 106.952617
iter 10 value 93.522974
iter 20 value 83.260771
iter 30 value 79.470068
iter 40 value 79.019784
iter 50 value 77.627655
iter 60 value 77.107409
iter 70 value 76.766364
iter 80 value 76.699651
iter 90 value 76.641057
iter 100 value 76.637472
final value 76.637472
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.525399
iter 10 value 94.352188
iter 20 value 94.175748
iter 30 value 93.802424
iter 40 value 88.669062
iter 50 value 83.819772
iter 60 value 82.530518
iter 70 value 81.382173
iter 80 value 81.003905
iter 90 value 79.577844
iter 100 value 79.366478
final value 79.366478
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.915234
iter 10 value 97.703788
iter 20 value 91.698696
iter 30 value 91.433336
iter 40 value 84.805161
iter 50 value 82.898878
iter 60 value 81.750403
iter 70 value 79.824696
iter 80 value 78.659634
iter 90 value 78.217615
iter 100 value 78.163270
final value 78.163270
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.934975
iter 10 value 94.138975
iter 20 value 93.462381
iter 30 value 92.488881
iter 40 value 81.103844
iter 50 value 79.308116
iter 60 value 79.136810
iter 70 value 78.578134
iter 80 value 78.376964
iter 90 value 78.067100
iter 100 value 77.400547
final value 77.400547
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.692473
iter 10 value 93.791606
iter 20 value 86.165232
iter 30 value 81.206401
iter 40 value 79.007121
iter 50 value 78.077207
iter 60 value 77.199369
iter 70 value 76.665494
iter 80 value 76.062950
iter 90 value 75.774670
iter 100 value 75.685214
final value 75.685214
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.508817
iter 10 value 86.443737
iter 20 value 79.537301
iter 30 value 78.885467
iter 40 value 78.557395
iter 50 value 78.266316
iter 60 value 78.178817
iter 70 value 78.134582
iter 80 value 78.075319
iter 90 value 78.045381
iter 100 value 78.002758
final value 78.002758
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.975497
iter 10 value 94.086883
iter 20 value 92.967266
iter 30 value 84.356461
iter 40 value 79.861868
iter 50 value 78.538967
iter 60 value 77.910249
iter 70 value 77.681216
iter 80 value 77.348704
iter 90 value 77.114801
iter 100 value 76.674283
final value 76.674283
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.549587
final value 94.054667
converged
Fitting Repeat 2
# weights: 103
initial value 101.531347
iter 10 value 94.054143
final value 94.053278
converged
Fitting Repeat 3
# weights: 103
initial value 97.129938
final value 94.054789
converged
Fitting Repeat 4
# weights: 103
initial value 100.415811
final value 94.054318
converged
Fitting Repeat 5
# weights: 103
initial value 98.197050
final value 94.054427
converged
Fitting Repeat 1
# weights: 305
initial value 97.030151
iter 10 value 94.057148
iter 20 value 94.052921
iter 20 value 94.052920
final value 94.052920
converged
Fitting Repeat 2
# weights: 305
initial value 96.073118
iter 10 value 93.249929
iter 20 value 93.247185
iter 30 value 91.657285
iter 40 value 91.591691
iter 50 value 90.931222
final value 90.919097
converged
Fitting Repeat 3
# weights: 305
initial value 98.228941
iter 10 value 92.529035
iter 20 value 92.527057
iter 30 value 92.480743
iter 40 value 82.336214
iter 50 value 80.899341
iter 60 value 80.893590
final value 80.893571
converged
Fitting Repeat 4
# weights: 305
initial value 113.318809
iter 10 value 94.057669
iter 20 value 94.053245
iter 30 value 91.758078
iter 40 value 89.372426
iter 50 value 89.346078
iter 60 value 89.343286
iter 70 value 85.632329
iter 80 value 85.285561
final value 85.284109
converged
Fitting Repeat 5
# weights: 305
initial value 102.048658
iter 10 value 94.057598
iter 20 value 93.608300
iter 30 value 92.942978
iter 40 value 82.061363
iter 50 value 80.537730
iter 60 value 80.199173
iter 70 value 80.165645
iter 80 value 80.000851
iter 90 value 79.635266
iter 100 value 79.432141
final value 79.432141
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 97.427233
iter 10 value 87.795281
iter 20 value 82.167132
iter 30 value 82.166312
iter 40 value 81.502472
iter 50 value 81.489017
iter 60 value 81.487088
iter 70 value 81.446285
iter 80 value 81.411059
iter 90 value 81.319173
iter 100 value 77.797041
final value 77.797041
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.914081
iter 10 value 93.844844
iter 20 value 93.836356
iter 30 value 83.068397
iter 40 value 82.543901
iter 50 value 82.189550
iter 60 value 79.410138
iter 70 value 76.771775
iter 80 value 76.369408
iter 90 value 76.218530
iter 100 value 76.135529
final value 76.135529
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.454795
iter 10 value 93.619062
iter 20 value 93.609670
iter 30 value 93.590611
iter 40 value 92.649569
iter 50 value 92.483079
final value 92.483028
converged
Fitting Repeat 4
# weights: 507
initial value 96.419110
iter 10 value 92.341842
iter 20 value 92.335520
iter 30 value 82.188897
final value 82.159728
converged
Fitting Repeat 5
# weights: 507
initial value 110.176003
iter 10 value 93.845493
iter 20 value 93.839298
iter 30 value 82.223605
iter 40 value 80.459656
iter 50 value 80.457863
iter 60 value 80.250091
iter 70 value 80.124784
iter 80 value 80.121001
iter 90 value 79.545194
iter 100 value 79.314552
final value 79.314552
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.943246
iter 10 value 94.252925
final value 94.252920
converged
Fitting Repeat 2
# weights: 103
initial value 104.949926
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 102.599869
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 100.026744
final value 93.300000
converged
Fitting Repeat 5
# weights: 103
initial value 97.344768
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 109.220971
iter 10 value 88.685895
iter 20 value 87.761476
iter 30 value 87.760914
final value 87.760888
converged
Fitting Repeat 2
# weights: 305
initial value 105.980183
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 103.799979
iter 10 value 89.216102
iter 20 value 83.507299
final value 83.505184
converged
Fitting Repeat 4
# weights: 305
initial value 102.485969
final value 94.310508
converged
Fitting Repeat 5
# weights: 305
initial value 100.711768
iter 10 value 92.746294
iter 20 value 92.731197
final value 92.731184
converged
Fitting Repeat 1
# weights: 507
initial value 98.184406
final value 94.354396
converged
Fitting Repeat 2
# weights: 507
initial value 112.395199
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 96.450831
iter 10 value 93.164280
iter 10 value 93.164280
iter 10 value 93.164280
final value 93.164280
converged
Fitting Repeat 4
# weights: 507
initial value 99.838908
iter 10 value 91.210700
iter 20 value 91.208528
iter 30 value 88.346173
iter 40 value 81.094164
iter 50 value 80.857369
iter 60 value 80.856111
iter 70 value 80.702580
iter 80 value 80.697187
final value 80.697171
converged
Fitting Repeat 5
# weights: 507
initial value 108.053947
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.406688
iter 10 value 94.102172
iter 20 value 87.409905
iter 30 value 84.812876
iter 40 value 84.351355
iter 50 value 83.789402
iter 60 value 83.146711
iter 70 value 82.319924
iter 80 value 82.317969
iter 80 value 82.317969
iter 80 value 82.317969
final value 82.317969
converged
Fitting Repeat 2
# weights: 103
initial value 98.771242
iter 10 value 94.550585
iter 20 value 94.486681
iter 30 value 94.486522
iter 40 value 85.286134
iter 50 value 81.755360
iter 60 value 81.466658
iter 70 value 80.243568
iter 80 value 78.888472
iter 90 value 78.877227
final value 78.877216
converged
Fitting Repeat 3
# weights: 103
initial value 97.592821
iter 10 value 94.488609
iter 20 value 94.217314
iter 30 value 93.595808
iter 40 value 93.366677
iter 50 value 92.752493
iter 60 value 86.048723
iter 70 value 84.629387
iter 80 value 84.620800
iter 90 value 84.603910
iter 100 value 84.595087
final value 84.595087
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 106.435320
iter 10 value 94.228423
iter 20 value 87.684683
iter 30 value 83.903674
iter 40 value 83.538921
iter 50 value 82.592059
iter 60 value 81.937279
final value 81.937192
converged
Fitting Repeat 5
# weights: 103
initial value 98.700181
iter 10 value 94.489321
iter 20 value 94.369142
iter 30 value 93.452586
iter 40 value 93.277306
iter 50 value 83.944393
iter 60 value 83.177775
iter 70 value 82.052449
iter 80 value 81.251490
iter 90 value 81.179345
iter 100 value 81.111780
final value 81.111780
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 110.580941
iter 10 value 90.649284
iter 20 value 82.327797
iter 30 value 79.581825
iter 40 value 78.868755
iter 50 value 78.266771
iter 60 value 78.020663
iter 70 value 77.859397
iter 80 value 77.740469
iter 90 value 77.558683
iter 100 value 77.483625
final value 77.483625
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 115.874345
iter 10 value 94.494181
iter 20 value 93.545640
iter 30 value 92.038717
iter 40 value 81.592060
iter 50 value 81.271349
iter 60 value 80.962365
iter 70 value 80.709369
iter 80 value 78.867652
iter 90 value 78.111217
iter 100 value 77.699066
final value 77.699066
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 114.380008
iter 10 value 93.518245
iter 20 value 86.621661
iter 30 value 82.118259
iter 40 value 81.503278
iter 50 value 81.315539
iter 60 value 80.550048
iter 70 value 78.904365
iter 80 value 78.343698
iter 90 value 78.240115
iter 100 value 77.956669
final value 77.956669
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.673944
iter 10 value 94.581790
iter 20 value 94.246984
iter 30 value 91.261494
iter 40 value 85.026193
iter 50 value 83.264434
iter 60 value 80.455014
iter 70 value 79.791749
iter 80 value 79.059469
iter 90 value 78.406318
iter 100 value 78.061424
final value 78.061424
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.885605
iter 10 value 94.430489
iter 20 value 93.374818
iter 30 value 92.542920
iter 40 value 86.954415
iter 50 value 86.058405
iter 60 value 84.111805
iter 70 value 83.972465
iter 80 value 83.836233
iter 90 value 83.805733
iter 100 value 83.693153
final value 83.693153
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.305021
iter 10 value 94.375771
iter 20 value 86.064539
iter 30 value 83.066472
iter 40 value 82.026975
iter 50 value 81.325183
iter 60 value 80.919308
iter 70 value 80.370066
iter 80 value 80.296504
iter 90 value 80.197600
iter 100 value 79.387244
final value 79.387244
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 123.003766
iter 10 value 94.430430
iter 20 value 86.665555
iter 30 value 84.196572
iter 40 value 82.523277
iter 50 value 81.359442
iter 60 value 78.692371
iter 70 value 77.652522
iter 80 value 77.275550
iter 90 value 77.081593
iter 100 value 76.900652
final value 76.900652
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.174410
iter 10 value 96.354259
iter 20 value 83.687247
iter 30 value 82.185808
iter 40 value 80.319828
iter 50 value 78.991739
iter 60 value 77.975852
iter 70 value 77.527862
iter 80 value 77.241507
iter 90 value 76.915450
iter 100 value 76.642252
final value 76.642252
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.239707
iter 10 value 94.328117
iter 20 value 92.419745
iter 30 value 86.624748
iter 40 value 80.575616
iter 50 value 79.165547
iter 60 value 78.596995
iter 70 value 78.412629
iter 80 value 78.165174
iter 90 value 78.101324
iter 100 value 78.031859
final value 78.031859
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.579984
iter 10 value 94.439908
iter 20 value 93.248197
iter 30 value 87.365803
iter 40 value 84.731449
iter 50 value 79.022327
iter 60 value 78.403403
iter 70 value 77.808992
iter 80 value 77.465691
iter 90 value 77.219144
iter 100 value 77.138340
final value 77.138340
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.020579
final value 94.485857
converged
Fitting Repeat 2
# weights: 103
initial value 95.618108
final value 94.485940
converged
Fitting Repeat 3
# weights: 103
initial value 96.394196
final value 94.485992
converged
Fitting Repeat 4
# weights: 103
initial value 96.701644
final value 94.485849
converged
Fitting Repeat 5
# weights: 103
initial value 96.495264
final value 94.485618
converged
Fitting Repeat 1
# weights: 305
initial value 97.645677
iter 10 value 94.359322
iter 20 value 94.312420
iter 30 value 85.759463
final value 85.277985
converged
Fitting Repeat 2
# weights: 305
initial value 95.953997
iter 10 value 94.488477
iter 20 value 94.480252
iter 30 value 83.663649
iter 40 value 83.369389
iter 50 value 78.443836
iter 60 value 77.534953
iter 70 value 77.444376
iter 80 value 77.444011
iter 90 value 76.995777
iter 100 value 76.285293
final value 76.285293
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.921867
iter 10 value 94.489110
iter 20 value 94.365621
final value 94.354746
converged
Fitting Repeat 4
# weights: 305
initial value 105.476824
iter 10 value 94.489245
iter 20 value 94.484645
iter 30 value 94.466314
iter 40 value 89.950105
iter 50 value 89.414038
iter 60 value 89.412921
iter 70 value 88.258845
iter 80 value 88.076058
iter 90 value 88.070244
final value 88.069507
converged
Fitting Repeat 5
# weights: 305
initial value 101.130567
iter 10 value 94.488640
iter 20 value 93.682235
final value 93.165292
converged
Fitting Repeat 1
# weights: 507
initial value 120.414058
iter 10 value 94.491727
iter 20 value 94.361099
iter 30 value 94.355650
iter 40 value 90.722279
iter 50 value 86.515819
iter 60 value 84.739009
iter 70 value 82.672042
iter 80 value 82.663675
iter 90 value 82.470811
iter 100 value 82.357223
final value 82.357223
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 98.835314
iter 10 value 94.063923
iter 20 value 91.493911
iter 30 value 83.518630
iter 40 value 83.515371
iter 50 value 82.740983
iter 60 value 82.386313
iter 70 value 82.381464
iter 80 value 82.381240
iter 80 value 82.381240
iter 80 value 82.381240
final value 82.381240
converged
Fitting Repeat 3
# weights: 507
initial value 108.931985
iter 10 value 94.362215
iter 20 value 93.692011
iter 30 value 85.637179
final value 85.637128
converged
Fitting Repeat 4
# weights: 507
initial value 124.674438
iter 10 value 94.492782
iter 20 value 94.101549
iter 30 value 87.693246
iter 40 value 87.670886
iter 50 value 85.462635
iter 60 value 82.723734
iter 70 value 82.712205
iter 80 value 81.886114
iter 90 value 81.879284
iter 100 value 80.766230
final value 80.766230
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.387719
iter 10 value 94.261945
iter 20 value 94.253339
iter 30 value 93.060761
iter 40 value 81.898035
iter 50 value 81.082576
iter 60 value 80.944418
iter 70 value 80.940885
iter 80 value 80.936278
iter 90 value 78.236418
iter 100 value 78.232718
final value 78.232718
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.636826
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 105.119113
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.696208
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.272590
iter 10 value 92.033956
final value 91.956163
converged
Fitting Repeat 5
# weights: 103
initial value 103.108110
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.942111
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 94.810055
iter 10 value 87.456700
iter 20 value 86.691145
iter 30 value 85.891162
iter 40 value 85.826643
final value 85.826162
converged
Fitting Repeat 3
# weights: 305
initial value 103.913991
iter 10 value 94.120664
iter 10 value 94.120664
iter 10 value 94.120664
final value 94.120664
converged
Fitting Repeat 4
# weights: 305
initial value 101.031296
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 118.408758
final value 94.275362
converged
Fitting Repeat 1
# weights: 507
initial value 121.454025
iter 10 value 94.269872
final value 94.263224
converged
Fitting Repeat 2
# weights: 507
initial value 124.425271
iter 10 value 94.275434
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 113.695860
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 109.508783
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 128.440395
final value 94.275362
converged
Fitting Repeat 1
# weights: 103
initial value 98.519926
iter 10 value 94.334849
iter 20 value 94.324207
iter 30 value 94.246147
iter 40 value 91.418354
iter 50 value 89.252600
iter 60 value 87.083646
iter 70 value 85.655199
iter 80 value 85.361333
iter 90 value 84.764683
iter 100 value 84.743352
final value 84.743352
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.103477
iter 10 value 94.396721
iter 20 value 89.348897
iter 30 value 87.808618
iter 40 value 85.662389
iter 50 value 85.388891
iter 60 value 83.659171
iter 70 value 83.520246
iter 80 value 83.104130
iter 90 value 83.076113
iter 100 value 83.071691
final value 83.071691
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 104.301115
iter 10 value 95.241261
iter 20 value 93.350248
iter 30 value 90.161333
iter 40 value 88.078404
iter 50 value 87.558678
iter 60 value 86.194005
iter 70 value 85.832799
iter 80 value 85.529732
iter 90 value 85.500820
final value 85.500699
converged
Fitting Repeat 4
# weights: 103
initial value 100.394420
iter 10 value 94.377103
iter 20 value 94.330454
iter 30 value 94.013099
iter 40 value 92.368213
iter 50 value 88.942315
iter 60 value 86.974200
iter 70 value 86.613781
iter 80 value 86.430442
iter 90 value 85.954477
final value 85.954155
converged
Fitting Repeat 5
# weights: 103
initial value 101.662940
iter 10 value 94.540812
iter 20 value 94.482097
iter 30 value 86.187335
iter 40 value 85.398723
iter 50 value 85.200550
iter 60 value 85.151866
iter 70 value 85.137227
final value 85.137150
converged
Fitting Repeat 1
# weights: 305
initial value 102.443520
iter 10 value 94.397463
iter 20 value 93.780204
iter 30 value 93.536308
iter 40 value 88.469284
iter 50 value 88.184625
iter 60 value 87.352745
iter 70 value 86.915358
iter 80 value 86.536441
iter 90 value 84.419975
iter 100 value 83.408024
final value 83.408024
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.348609
iter 10 value 94.472515
iter 20 value 87.358100
iter 30 value 84.720383
iter 40 value 84.083461
iter 50 value 83.760882
iter 60 value 83.141371
iter 70 value 82.751742
iter 80 value 82.621874
iter 90 value 82.409771
iter 100 value 82.213677
final value 82.213677
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.112373
iter 10 value 94.230874
iter 20 value 91.409807
iter 30 value 88.637801
iter 40 value 87.867968
iter 50 value 86.472083
iter 60 value 85.720740
iter 70 value 83.992916
iter 80 value 83.262863
iter 90 value 82.641097
iter 100 value 82.505757
final value 82.505757
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.666460
iter 10 value 94.468671
iter 20 value 87.720340
iter 30 value 84.303760
iter 40 value 84.006076
iter 50 value 83.715184
iter 60 value 83.485836
iter 70 value 83.405271
iter 80 value 83.403584
iter 90 value 83.293491
iter 100 value 82.571024
final value 82.571024
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.286587
iter 10 value 96.213899
iter 20 value 88.584067
iter 30 value 88.027428
iter 40 value 87.788720
iter 50 value 86.697233
iter 60 value 83.861384
iter 70 value 83.506227
iter 80 value 83.202392
iter 90 value 82.592087
iter 100 value 82.364092
final value 82.364092
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.838550
iter 10 value 94.511495
iter 20 value 94.128537
iter 30 value 90.642260
iter 40 value 86.959870
iter 50 value 85.046035
iter 60 value 84.389306
iter 70 value 83.707032
iter 80 value 82.925820
iter 90 value 82.460853
iter 100 value 82.339090
final value 82.339090
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.014860
iter 10 value 97.871512
iter 20 value 94.662200
iter 30 value 93.753759
iter 40 value 89.380110
iter 50 value 87.565274
iter 60 value 86.692791
iter 70 value 84.892355
iter 80 value 84.177813
iter 90 value 83.723842
iter 100 value 83.524050
final value 83.524050
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 126.483296
iter 10 value 94.306881
iter 20 value 86.695844
iter 30 value 85.710362
iter 40 value 83.858814
iter 50 value 83.241717
iter 60 value 82.820492
iter 70 value 82.550232
iter 80 value 82.315196
iter 90 value 82.172275
iter 100 value 82.028614
final value 82.028614
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.323383
iter 10 value 94.966282
iter 20 value 88.053791
iter 30 value 84.597342
iter 40 value 83.684062
iter 50 value 83.147861
iter 60 value 82.921956
iter 70 value 82.592289
iter 80 value 82.505764
iter 90 value 82.411118
iter 100 value 82.243188
final value 82.243188
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.556202
iter 10 value 94.911118
iter 20 value 94.514886
iter 30 value 94.312340
iter 40 value 93.294578
iter 50 value 87.355358
iter 60 value 85.647462
iter 70 value 84.183158
iter 80 value 83.840747
iter 90 value 83.547473
iter 100 value 83.460081
final value 83.460081
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.467803
final value 94.277191
converged
Fitting Repeat 2
# weights: 103
initial value 96.533474
final value 94.485848
converged
Fitting Repeat 3
# weights: 103
initial value 98.530034
iter 10 value 94.485915
iter 20 value 94.281643
iter 30 value 94.276914
iter 40 value 94.275466
final value 94.275448
converged
Fitting Repeat 4
# weights: 103
initial value 114.796651
iter 10 value 94.277097
iter 20 value 94.275925
iter 30 value 91.113702
iter 40 value 85.542434
iter 50 value 85.039272
iter 60 value 84.993484
final value 84.993360
converged
Fitting Repeat 5
# weights: 103
initial value 97.916799
final value 94.486254
converged
Fitting Repeat 1
# weights: 305
initial value 114.658385
iter 10 value 94.488947
iter 20 value 94.484200
iter 30 value 90.185835
iter 40 value 90.116066
iter 50 value 90.100802
iter 60 value 90.095753
iter 70 value 89.976188
iter 80 value 87.219848
iter 90 value 84.945087
iter 100 value 84.916891
final value 84.916891
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 117.453694
iter 10 value 94.489177
iter 20 value 92.491498
iter 30 value 87.099126
iter 40 value 87.097401
iter 50 value 85.726218
iter 60 value 85.472930
iter 70 value 85.471471
final value 85.471459
converged
Fitting Repeat 3
# weights: 305
initial value 109.951479
iter 10 value 94.490055
iter 20 value 89.652303
final value 85.936821
converged
Fitting Repeat 4
# weights: 305
initial value 104.916496
iter 10 value 94.489284
iter 20 value 94.423315
iter 30 value 90.682148
iter 40 value 86.760663
iter 50 value 86.219537
iter 60 value 86.206864
iter 70 value 86.205792
iter 80 value 86.203245
final value 86.203204
converged
Fitting Repeat 5
# weights: 305
initial value 118.074917
iter 10 value 94.280883
iter 20 value 94.278091
final value 94.276059
converged
Fitting Repeat 1
# weights: 507
initial value 98.701242
iter 10 value 94.332425
iter 20 value 91.189610
iter 30 value 86.718092
iter 40 value 86.692885
iter 50 value 85.697169
iter 60 value 85.528088
iter 70 value 85.317802
iter 80 value 85.317539
iter 90 value 85.316541
iter 100 value 85.008758
final value 85.008758
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.931592
iter 10 value 92.902160
iter 20 value 91.599106
iter 30 value 91.249558
iter 40 value 91.238829
iter 50 value 91.227957
iter 60 value 91.170789
iter 70 value 91.154725
iter 80 value 85.521704
iter 90 value 83.983301
iter 100 value 83.827893
final value 83.827893
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.357190
iter 10 value 94.283963
iter 20 value 94.276779
iter 30 value 85.977538
iter 40 value 85.936826
final value 85.936709
converged
Fitting Repeat 4
# weights: 507
initial value 106.815748
iter 10 value 94.492538
iter 20 value 94.415210
iter 30 value 87.749120
iter 40 value 86.705446
iter 50 value 86.568347
iter 60 value 86.557377
iter 70 value 86.546806
final value 86.546769
converged
Fitting Repeat 5
# weights: 507
initial value 105.797975
iter 10 value 94.492127
iter 20 value 94.277202
iter 30 value 94.273089
iter 40 value 88.898562
iter 50 value 85.659722
iter 60 value 85.599712
iter 70 value 83.831779
iter 80 value 83.676631
iter 90 value 83.640829
iter 100 value 83.625307
final value 83.625307
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 124.355283
iter 10 value 117.558246
iter 20 value 116.695692
iter 30 value 115.177257
iter 40 value 114.628400
iter 50 value 110.183842
iter 60 value 109.106598
iter 70 value 109.104224
final value 109.104133
converged
Fitting Repeat 2
# weights: 507
initial value 135.724483
iter 10 value 117.777967
iter 20 value 117.751581
final value 117.728566
converged
Fitting Repeat 3
# weights: 507
initial value 145.236630
iter 10 value 107.426572
iter 20 value 105.312586
iter 30 value 105.275285
iter 40 value 104.805514
iter 50 value 104.711314
iter 60 value 104.698121
iter 70 value 104.692813
iter 80 value 104.691448
final value 104.690317
converged
Fitting Repeat 4
# weights: 507
initial value 133.423419
iter 10 value 117.898715
iter 20 value 117.890346
iter 30 value 114.357979
final value 114.315864
converged
Fitting Repeat 5
# weights: 507
initial value 126.969470
iter 10 value 117.893334
iter 20 value 117.556990
iter 30 value 114.071097
iter 40 value 108.554218
iter 50 value 108.529540
iter 60 value 108.528784
iter 70 value 107.185183
final value 107.181986
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Fri Mar 13 00:18:09 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.911 1.345 92.526
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.863 | 0.619 | 34.487 | |
| FreqInteractors | 0.450 | 0.026 | 0.476 | |
| calculateAAC | 0.033 | 0.002 | 0.035 | |
| calculateAutocor | 0.282 | 0.019 | 0.300 | |
| calculateCTDC | 0.076 | 0.001 | 0.077 | |
| calculateCTDD | 0.489 | 0.002 | 0.491 | |
| calculateCTDT | 0.147 | 0.003 | 0.150 | |
| calculateCTriad | 0.430 | 0.006 | 0.436 | |
| calculateDC | 0.086 | 0.007 | 0.093 | |
| calculateF | 0.340 | 0.001 | 0.341 | |
| calculateKSAAP | 0.112 | 0.008 | 0.120 | |
| calculateQD_Sm | 1.974 | 0.026 | 2.000 | |
| calculateTC | 1.540 | 0.146 | 1.687 | |
| calculateTC_Sm | 0.302 | 0.004 | 0.306 | |
| corr_plot | 35.483 | 0.320 | 35.831 | |
| enrichfindP | 0.567 | 0.038 | 8.997 | |
| enrichfind_hp | 0.063 | 0.003 | 2.105 | |
| enrichplot | 0.539 | 0.005 | 0.543 | |
| filter_missing_values | 0.001 | 0.001 | 0.001 | |
| getFASTA | 0.482 | 0.010 | 4.328 | |
| getHPI | 0.000 | 0.001 | 0.001 | |
| get_negativePPI | 0.001 | 0.001 | 0.003 | |
| get_positivePPI | 0.001 | 0.000 | 0.001 | |
| impute_missing_data | 0.003 | 0.001 | 0.002 | |
| plotPPI | 0.094 | 0.006 | 0.100 | |
| pred_ensembel | 12.923 | 0.103 | 11.713 | |
| var_imp | 38.179 | 0.581 | 38.837 | |