| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-21 11:34 -0400 (Sat, 21 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4866 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4545 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1013/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-21 00:31:47 -0400 (Sat, 21 Mar 2026) |
| EndedAt: 2026-03-21 00:47:27 -0400 (Sat, 21 Mar 2026) |
| EllapsedTime: 940.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-21 04:31:47 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 35.845 0.616 37.290
corr_plot 34.671 0.362 35.096
FSmethod 33.525 0.535 34.111
pred_ensembel 12.810 0.100 11.611
enrichfindP 0.591 0.046 20.016
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 95.566981
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 98.698842
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.905231
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.047101
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 102.337849
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.228991
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 97.736759
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 102.148484
final value 94.032967
converged
Fitting Repeat 4
# weights: 305
initial value 102.347933
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 95.230448
iter 10 value 93.299161
iter 20 value 92.743502
final value 92.743210
converged
Fitting Repeat 1
# weights: 507
initial value 107.871019
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 94.968399
iter 10 value 94.028500
final value 94.028175
converged
Fitting Repeat 3
# weights: 507
initial value 122.035665
iter 10 value 93.923918
iter 10 value 93.923917
iter 10 value 93.923917
final value 93.923917
converged
Fitting Repeat 4
# weights: 507
initial value 109.097461
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 113.527417
iter 10 value 94.051393
iter 20 value 94.050859
final value 94.050855
converged
Fitting Repeat 1
# weights: 103
initial value 105.022476
iter 10 value 93.351463
iter 20 value 87.206656
iter 30 value 85.328916
iter 40 value 83.827157
iter 50 value 82.875938
iter 60 value 82.584196
iter 70 value 82.229636
iter 80 value 81.653116
iter 90 value 81.464737
final value 81.464726
converged
Fitting Repeat 2
# weights: 103
initial value 100.570650
iter 10 value 94.055537
iter 20 value 84.722275
iter 30 value 84.080286
iter 40 value 82.555442
iter 50 value 82.461434
iter 60 value 82.357664
final value 82.353627
converged
Fitting Repeat 3
# weights: 103
initial value 104.748239
iter 10 value 94.056674
iter 20 value 93.892218
iter 30 value 92.261701
iter 40 value 91.288052
iter 50 value 91.042708
iter 60 value 89.885941
iter 70 value 85.016469
iter 80 value 84.657132
iter 90 value 84.144469
iter 100 value 83.320434
final value 83.320434
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.135265
iter 10 value 89.153365
iter 20 value 86.153137
iter 30 value 83.511845
iter 40 value 82.980733
iter 50 value 82.535196
iter 60 value 82.455456
iter 70 value 82.371130
final value 82.353627
converged
Fitting Repeat 5
# weights: 103
initial value 103.712224
iter 10 value 94.056659
iter 20 value 91.068959
iter 30 value 86.865677
iter 40 value 86.182088
iter 50 value 83.435796
iter 60 value 82.708792
iter 70 value 82.581954
iter 80 value 82.557764
iter 90 value 82.520221
iter 100 value 82.469915
final value 82.469915
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 107.041526
iter 10 value 94.478904
iter 20 value 93.857267
iter 30 value 88.870409
iter 40 value 85.160439
iter 50 value 84.855729
iter 60 value 82.887231
iter 70 value 82.284543
iter 80 value 82.126652
iter 90 value 81.949368
iter 100 value 81.737588
final value 81.737588
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.781785
iter 10 value 94.193666
iter 20 value 92.698858
iter 30 value 92.359989
iter 40 value 91.230697
iter 50 value 90.759548
iter 60 value 88.913518
iter 70 value 85.112938
iter 80 value 82.594004
iter 90 value 80.956511
iter 100 value 80.585277
final value 80.585277
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.365579
iter 10 value 86.850026
iter 20 value 86.037007
iter 30 value 83.228423
iter 40 value 81.820007
iter 50 value 81.018755
iter 60 value 80.534668
iter 70 value 80.224887
iter 80 value 80.120358
iter 90 value 80.046649
iter 100 value 80.030303
final value 80.030303
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.868492
iter 10 value 93.792680
iter 20 value 90.091997
iter 30 value 89.278062
iter 40 value 84.897284
iter 50 value 81.996932
iter 60 value 81.168244
iter 70 value 80.353950
iter 80 value 80.190484
iter 90 value 80.051165
iter 100 value 80.037520
final value 80.037520
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.767778
iter 10 value 94.036550
iter 20 value 87.665658
iter 30 value 85.053586
iter 40 value 83.433742
iter 50 value 82.969154
iter 60 value 81.514303
iter 70 value 80.847340
iter 80 value 80.306296
iter 90 value 80.155468
iter 100 value 80.115854
final value 80.115854
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.546010
iter 10 value 95.018365
iter 20 value 93.488527
iter 30 value 91.136009
iter 40 value 90.977961
iter 50 value 90.863369
iter 60 value 90.757115
iter 70 value 86.979888
iter 80 value 84.878029
iter 90 value 83.087727
iter 100 value 82.602107
final value 82.602107
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 128.890369
iter 10 value 94.128578
iter 20 value 93.269514
iter 30 value 83.637762
iter 40 value 82.660657
iter 50 value 82.065547
iter 60 value 81.355166
iter 70 value 80.892579
iter 80 value 80.491615
iter 90 value 80.284496
iter 100 value 80.216378
final value 80.216378
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.285993
iter 10 value 91.131769
iter 20 value 87.613666
iter 30 value 85.558360
iter 40 value 85.400065
iter 50 value 83.493039
iter 60 value 82.556960
iter 70 value 82.354178
iter 80 value 82.292779
iter 90 value 81.361528
iter 100 value 80.409833
final value 80.409833
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.572304
iter 10 value 94.209144
iter 20 value 93.411301
iter 30 value 89.482141
iter 40 value 89.060326
iter 50 value 87.433658
iter 60 value 84.839218
iter 70 value 83.800749
iter 80 value 83.705749
iter 90 value 83.211965
iter 100 value 82.167546
final value 82.167546
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.698486
iter 10 value 92.571851
iter 20 value 86.803794
iter 30 value 85.973394
iter 40 value 85.855267
iter 50 value 83.978059
iter 60 value 82.280332
iter 70 value 81.917747
iter 80 value 81.489943
iter 90 value 80.828514
iter 100 value 80.320718
final value 80.320718
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.516527
final value 94.054545
converged
Fitting Repeat 2
# weights: 103
initial value 95.202891
final value 94.054563
converged
Fitting Repeat 3
# weights: 103
initial value 95.970066
final value 94.054676
converged
Fitting Repeat 4
# weights: 103
initial value 98.560095
final value 94.054544
converged
Fitting Repeat 5
# weights: 103
initial value 94.294700
iter 10 value 94.054541
iter 20 value 94.042979
iter 30 value 93.951847
iter 40 value 82.346234
iter 50 value 82.334654
iter 60 value 82.334119
iter 70 value 82.312962
iter 80 value 82.305711
iter 90 value 82.012949
final value 82.009831
converged
Fitting Repeat 1
# weights: 305
initial value 95.479038
iter 10 value 94.037828
iter 20 value 93.987299
iter 30 value 93.962445
iter 40 value 93.962327
iter 40 value 93.962327
iter 40 value 93.962327
final value 93.962327
converged
Fitting Repeat 2
# weights: 305
initial value 108.049050
iter 10 value 94.057808
iter 20 value 94.052922
final value 94.052918
converged
Fitting Repeat 3
# weights: 305
initial value 101.500853
iter 10 value 94.057783
iter 20 value 94.053024
iter 30 value 93.802792
iter 40 value 85.822494
iter 50 value 85.810129
iter 60 value 85.625258
iter 70 value 85.440683
iter 80 value 85.364452
iter 90 value 85.359093
final value 85.359074
converged
Fitting Repeat 4
# weights: 305
initial value 95.487295
iter 10 value 94.057744
iter 20 value 93.822338
iter 30 value 84.940978
iter 40 value 81.636407
iter 50 value 81.522726
iter 60 value 81.101265
iter 70 value 80.965778
iter 80 value 80.489494
iter 90 value 79.831632
iter 100 value 79.495999
final value 79.495999
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 116.519100
iter 10 value 94.057278
iter 20 value 94.040501
iter 30 value 94.037047
iter 40 value 94.035092
iter 50 value 94.033178
iter 60 value 91.047060
iter 70 value 85.324752
final value 85.323830
converged
Fitting Repeat 1
# weights: 507
initial value 95.114325
iter 10 value 84.899768
iter 20 value 83.757954
iter 30 value 83.314064
iter 40 value 83.310534
iter 50 value 83.289605
iter 60 value 82.846530
iter 70 value 82.756952
iter 80 value 82.641556
iter 90 value 81.803888
iter 100 value 81.294893
final value 81.294893
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.982064
iter 10 value 94.036512
iter 20 value 94.003355
iter 30 value 92.893356
final value 92.893349
converged
Fitting Repeat 3
# weights: 507
initial value 120.949086
iter 10 value 94.061627
final value 94.053802
converged
Fitting Repeat 4
# weights: 507
initial value 120.372010
iter 10 value 92.892938
iter 20 value 87.298050
iter 30 value 84.795248
iter 40 value 83.979553
iter 50 value 83.300301
iter 60 value 83.233151
iter 70 value 83.229955
iter 80 value 83.062628
iter 90 value 82.576356
final value 82.536371
converged
Fitting Repeat 5
# weights: 507
initial value 108.274618
iter 10 value 94.041456
iter 20 value 91.928352
iter 30 value 85.080173
iter 40 value 84.743869
iter 50 value 84.691674
final value 84.691580
converged
Fitting Repeat 1
# weights: 103
initial value 95.716130
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 102.042581
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.865124
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.684969
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 110.040957
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 115.549035
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 95.838221
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 102.223501
iter 10 value 92.523916
final value 92.523810
converged
Fitting Repeat 4
# weights: 305
initial value 105.879869
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 95.445678
final value 93.900000
converged
Fitting Repeat 1
# weights: 507
initial value 101.718859
iter 10 value 93.915757
final value 93.915748
converged
Fitting Repeat 2
# weights: 507
initial value 114.036886
iter 10 value 93.682544
iter 20 value 93.489967
iter 30 value 93.076528
iter 40 value 93.057164
iter 50 value 88.979706
iter 60 value 86.452092
final value 86.445879
converged
Fitting Repeat 3
# weights: 507
initial value 97.880519
iter 10 value 93.915746
iter 10 value 93.915746
iter 10 value 93.915746
final value 93.915746
converged
Fitting Repeat 4
# weights: 507
initial value 99.180945
final value 93.915746
converged
Fitting Repeat 5
# weights: 507
initial value 99.045273
iter 10 value 91.452238
iter 20 value 86.604541
iter 30 value 86.081684
iter 40 value 85.957463
iter 50 value 85.297386
iter 60 value 85.163054
final value 85.162865
converged
Fitting Repeat 1
# weights: 103
initial value 97.037335
iter 10 value 94.086387
iter 20 value 87.489253
iter 30 value 85.119606
iter 40 value 83.695754
iter 50 value 83.517371
iter 60 value 82.890674
iter 70 value 82.686003
iter 80 value 82.684926
final value 82.684773
converged
Fitting Repeat 2
# weights: 103
initial value 97.995918
iter 10 value 94.054865
iter 20 value 93.407293
iter 30 value 86.195231
iter 40 value 82.825952
iter 50 value 82.698422
iter 60 value 82.396431
iter 70 value 82.310623
iter 80 value 81.952958
final value 81.946765
converged
Fitting Repeat 3
# weights: 103
initial value 98.727351
iter 10 value 92.786189
iter 20 value 92.448649
iter 30 value 92.290801
iter 40 value 86.926847
iter 50 value 85.154797
iter 60 value 83.448088
iter 70 value 81.450324
iter 80 value 81.175685
iter 90 value 79.509604
iter 100 value 79.397054
final value 79.397054
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 101.388806
iter 10 value 94.054594
iter 20 value 93.664969
iter 30 value 93.512220
iter 40 value 90.862982
iter 50 value 87.229739
iter 60 value 86.988213
iter 70 value 84.104394
iter 80 value 83.911410
iter 90 value 83.898005
iter 100 value 83.897842
final value 83.897842
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 104.964891
iter 10 value 93.894549
iter 20 value 93.349034
iter 30 value 88.606440
iter 40 value 87.606249
iter 50 value 87.158282
iter 60 value 84.473423
iter 70 value 84.133539
iter 80 value 83.997849
iter 90 value 83.570928
iter 100 value 79.751491
final value 79.751491
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 104.817949
iter 10 value 93.417865
iter 20 value 89.854431
iter 30 value 86.908206
iter 40 value 85.797884
iter 50 value 84.734118
iter 60 value 81.466950
iter 70 value 81.204651
iter 80 value 80.750439
iter 90 value 79.343311
iter 100 value 78.421060
final value 78.421060
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 121.822492
iter 10 value 94.561645
iter 20 value 93.648956
iter 30 value 90.219293
iter 40 value 88.563792
iter 50 value 88.250007
iter 60 value 85.646074
iter 70 value 83.693699
iter 80 value 80.746669
iter 90 value 79.729553
iter 100 value 78.575898
final value 78.575898
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.090191
iter 10 value 94.087182
iter 20 value 85.471660
iter 30 value 82.258233
iter 40 value 79.270033
iter 50 value 78.602116
iter 60 value 78.281308
iter 70 value 78.199346
iter 80 value 78.179228
iter 90 value 78.097516
iter 100 value 77.864453
final value 77.864453
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 120.628406
iter 10 value 94.142663
iter 20 value 89.054376
iter 30 value 84.505811
iter 40 value 83.782788
iter 50 value 81.829857
iter 60 value 80.827750
iter 70 value 80.221212
iter 80 value 79.807039
iter 90 value 79.038074
iter 100 value 78.534844
final value 78.534844
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 122.506338
iter 10 value 92.916647
iter 20 value 84.628772
iter 30 value 82.877591
iter 40 value 80.560314
iter 50 value 80.083969
iter 60 value 79.461404
iter 70 value 78.657442
iter 80 value 78.192646
iter 90 value 77.930723
iter 100 value 77.542445
final value 77.542445
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.280131
iter 10 value 94.297712
iter 20 value 88.911149
iter 30 value 84.795766
iter 40 value 83.178415
iter 50 value 80.378922
iter 60 value 80.239342
iter 70 value 79.808297
iter 80 value 79.427634
iter 90 value 78.779864
iter 100 value 78.600176
final value 78.600176
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.352377
iter 10 value 86.749425
iter 20 value 84.020266
iter 30 value 83.545989
iter 40 value 82.876797
iter 50 value 80.509098
iter 60 value 78.600541
iter 70 value 78.169767
iter 80 value 78.100358
iter 90 value 78.033215
iter 100 value 77.826463
final value 77.826463
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.784577
iter 10 value 94.392157
iter 20 value 93.891592
iter 30 value 89.220169
iter 40 value 84.254922
iter 50 value 83.614575
iter 60 value 83.462187
iter 70 value 82.474105
iter 80 value 81.173890
iter 90 value 80.412521
iter 100 value 79.184406
final value 79.184406
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.446943
iter 10 value 95.906361
iter 20 value 92.433264
iter 30 value 90.272669
iter 40 value 86.778828
iter 50 value 81.913794
iter 60 value 81.545327
iter 70 value 81.275106
iter 80 value 80.887304
iter 90 value 80.459196
iter 100 value 78.957903
final value 78.957903
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.381677
iter 10 value 96.094806
iter 20 value 93.919120
iter 30 value 85.720300
iter 40 value 83.800291
iter 50 value 83.192165
iter 60 value 82.882020
iter 70 value 82.638886
iter 80 value 82.464896
iter 90 value 80.696070
iter 100 value 79.277562
final value 79.277562
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.107022
final value 94.054563
converged
Fitting Repeat 2
# weights: 103
initial value 100.102781
final value 94.054527
converged
Fitting Repeat 3
# weights: 103
initial value 112.496060
iter 10 value 94.061200
iter 20 value 94.053354
final value 94.052944
converged
Fitting Repeat 4
# weights: 103
initial value 102.145432
final value 94.054528
converged
Fitting Repeat 5
# weights: 103
initial value 94.722429
final value 94.054432
converged
Fitting Repeat 1
# weights: 305
initial value 106.897930
iter 10 value 94.058108
iter 20 value 94.053324
iter 30 value 88.214840
iter 40 value 85.110030
iter 50 value 84.372196
iter 60 value 84.092165
iter 70 value 83.619977
iter 80 value 83.594757
iter 90 value 83.289611
iter 100 value 83.242384
final value 83.242384
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.690235
iter 10 value 88.167125
iter 20 value 86.284949
iter 30 value 86.282520
iter 40 value 85.221627
iter 50 value 84.350756
iter 60 value 84.338238
iter 70 value 84.334429
iter 80 value 84.258256
iter 90 value 84.187016
iter 100 value 84.186979
final value 84.186979
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 113.959920
iter 10 value 94.057429
iter 20 value 94.051505
iter 30 value 93.899877
iter 40 value 89.240781
iter 50 value 87.705950
iter 60 value 87.675477
iter 70 value 87.647036
iter 80 value 87.458328
iter 90 value 87.392178
iter 100 value 87.205168
final value 87.205168
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.915752
iter 10 value 93.333426
iter 20 value 93.329597
iter 30 value 85.637034
iter 40 value 85.619240
iter 50 value 85.598530
iter 60 value 85.419386
iter 70 value 85.066206
iter 80 value 85.051011
iter 90 value 85.045250
iter 100 value 84.594629
final value 84.594629
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.817749
iter 10 value 94.057781
iter 20 value 94.008900
iter 30 value 92.024327
iter 40 value 87.187202
iter 50 value 86.531009
iter 60 value 85.048714
iter 70 value 85.034066
final value 85.034052
converged
Fitting Repeat 1
# weights: 507
initial value 97.804139
iter 10 value 94.054723
iter 20 value 93.211632
iter 30 value 90.877627
iter 40 value 90.838405
iter 50 value 90.777895
iter 60 value 90.757945
final value 90.757771
converged
Fitting Repeat 2
# weights: 507
initial value 95.288938
iter 10 value 93.923872
iter 20 value 89.941325
iter 30 value 85.613424
iter 40 value 85.609270
iter 50 value 85.598088
iter 60 value 85.250028
final value 85.249967
converged
Fitting Repeat 3
# weights: 507
initial value 122.862806
iter 10 value 93.923619
iter 20 value 93.672473
iter 30 value 88.884481
iter 40 value 86.897690
iter 50 value 86.850926
iter 60 value 86.850677
iter 70 value 86.850154
iter 80 value 86.849901
final value 86.849882
converged
Fitting Repeat 4
# weights: 507
initial value 101.324140
iter 10 value 93.784422
iter 20 value 93.189683
iter 30 value 84.722555
iter 40 value 84.117758
iter 50 value 83.735344
iter 60 value 81.509552
iter 70 value 81.383157
iter 80 value 81.138797
iter 90 value 80.908988
iter 100 value 80.908150
final value 80.908150
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 128.496135
iter 10 value 93.923698
iter 20 value 93.669579
iter 30 value 92.641189
iter 40 value 87.425811
iter 50 value 85.435672
iter 60 value 85.423990
iter 70 value 85.419748
iter 80 value 85.202742
iter 90 value 80.705243
iter 100 value 80.398797
final value 80.398797
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.523797
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.370389
iter 10 value 92.269816
final value 92.269063
converged
Fitting Repeat 3
# weights: 103
initial value 94.923243
final value 94.114232
converged
Fitting Repeat 4
# weights: 103
initial value 100.206040
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.685271
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.984255
iter 10 value 94.215091
iter 20 value 94.214011
final value 94.214007
converged
Fitting Repeat 2
# weights: 305
initial value 100.125486
final value 94.275363
converged
Fitting Repeat 3
# weights: 305
initial value 104.565140
iter 10 value 93.119697
iter 20 value 82.358170
iter 30 value 82.152103
iter 40 value 82.145311
iter 40 value 82.145311
final value 82.145311
converged
Fitting Repeat 4
# weights: 305
initial value 96.084789
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 94.518898
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 120.685704
iter 10 value 94.278927
final value 94.275362
converged
Fitting Repeat 2
# weights: 507
initial value 97.473789
iter 10 value 92.129311
iter 20 value 91.849815
final value 91.849812
converged
Fitting Repeat 3
# weights: 507
initial value 106.947282
final value 94.275362
converged
Fitting Repeat 4
# weights: 507
initial value 94.894813
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 97.244414
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.137484
iter 10 value 94.487581
iter 20 value 94.209401
iter 30 value 91.045345
iter 40 value 90.413764
iter 50 value 84.413435
iter 60 value 83.990069
iter 70 value 83.931728
iter 80 value 81.220202
iter 90 value 80.804280
iter 100 value 80.782450
final value 80.782450
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.972390
iter 10 value 94.476429
iter 20 value 94.274206
iter 30 value 93.656082
iter 40 value 89.887397
iter 50 value 86.254998
iter 60 value 85.070796
iter 70 value 81.779115
iter 80 value 81.675364
iter 90 value 81.595541
iter 100 value 81.585048
final value 81.585048
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.414018
iter 10 value 94.509164
iter 20 value 89.128324
iter 30 value 85.811865
iter 40 value 83.040331
iter 50 value 82.559614
iter 60 value 81.786487
iter 70 value 81.585575
final value 81.584782
converged
Fitting Repeat 4
# weights: 103
initial value 100.357031
iter 10 value 94.648808
iter 20 value 93.583682
iter 30 value 88.931061
iter 40 value 86.598967
iter 50 value 83.819904
iter 60 value 83.538576
iter 70 value 83.471689
final value 83.471126
converged
Fitting Repeat 5
# weights: 103
initial value 97.245826
iter 10 value 88.525920
iter 20 value 83.830170
iter 30 value 83.250139
iter 40 value 82.620094
iter 50 value 82.013377
iter 60 value 81.958448
iter 60 value 81.958448
iter 60 value 81.958448
final value 81.958448
converged
Fitting Repeat 1
# weights: 305
initial value 102.269261
iter 10 value 94.463783
iter 20 value 84.265400
iter 30 value 83.560954
iter 40 value 82.449776
iter 50 value 80.798198
iter 60 value 79.866724
iter 70 value 79.557362
iter 80 value 79.384868
iter 90 value 79.233312
iter 100 value 78.979788
final value 78.979788
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.703221
iter 10 value 92.742798
iter 20 value 90.546555
iter 30 value 84.062059
iter 40 value 82.540731
iter 50 value 82.435910
iter 60 value 82.341201
iter 70 value 81.816463
iter 80 value 81.698221
iter 90 value 81.220506
iter 100 value 80.804555
final value 80.804555
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.037903
iter 10 value 94.458321
iter 20 value 94.239521
iter 30 value 94.189746
iter 40 value 93.984924
iter 50 value 84.055482
iter 60 value 82.467388
iter 70 value 82.108036
iter 80 value 81.862501
iter 90 value 81.761369
iter 100 value 81.739521
final value 81.739521
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.178283
iter 10 value 94.454531
iter 20 value 94.215380
iter 30 value 83.595825
iter 40 value 82.706112
iter 50 value 81.997557
iter 60 value 81.844009
iter 70 value 81.815856
iter 80 value 81.720485
iter 90 value 81.484261
iter 100 value 80.454306
final value 80.454306
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 106.618407
iter 10 value 94.313742
iter 20 value 91.535305
iter 30 value 86.455531
iter 40 value 85.232107
iter 50 value 82.777287
iter 60 value 82.502096
iter 70 value 82.238301
iter 80 value 82.233172
iter 90 value 82.216305
iter 100 value 82.080986
final value 82.080986
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 140.129532
iter 10 value 94.350106
iter 20 value 87.275279
iter 30 value 84.525139
iter 40 value 82.954857
iter 50 value 81.991964
iter 60 value 81.556197
iter 70 value 80.292281
iter 80 value 79.287511
iter 90 value 79.118340
iter 100 value 78.995645
final value 78.995645
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.358661
iter 10 value 93.908999
iter 20 value 87.337342
iter 30 value 85.186666
iter 40 value 83.815239
iter 50 value 82.993679
iter 60 value 81.037543
iter 70 value 80.836700
iter 80 value 80.210211
iter 90 value 79.891406
iter 100 value 79.202319
final value 79.202319
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.390301
iter 10 value 93.811405
iter 20 value 91.643497
iter 30 value 89.165644
iter 40 value 87.765513
iter 50 value 86.803692
iter 60 value 82.883150
iter 70 value 80.521942
iter 80 value 79.867937
iter 90 value 79.721166
iter 100 value 79.562290
final value 79.562290
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.348304
iter 10 value 98.892284
iter 20 value 94.422763
iter 30 value 94.271815
iter 40 value 93.822306
iter 50 value 83.497653
iter 60 value 83.102077
iter 70 value 82.465408
iter 80 value 81.401538
iter 90 value 80.650756
iter 100 value 79.505109
final value 79.505109
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.311267
iter 10 value 94.867074
iter 20 value 86.351857
iter 30 value 81.812335
iter 40 value 80.425074
iter 50 value 79.935379
iter 60 value 79.607541
iter 70 value 79.344722
iter 80 value 79.105686
iter 90 value 79.041576
iter 100 value 79.002282
final value 79.002282
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.681403
iter 10 value 94.491186
final value 94.489046
converged
Fitting Repeat 2
# weights: 103
initial value 107.058366
iter 10 value 94.485860
iter 20 value 94.484294
iter 30 value 85.766724
iter 40 value 83.901751
iter 50 value 83.279987
iter 60 value 81.910409
iter 70 value 81.659740
iter 80 value 81.649589
final value 81.585002
converged
Fitting Repeat 3
# weights: 103
initial value 98.750207
final value 94.485707
converged
Fitting Repeat 4
# weights: 103
initial value 98.541200
final value 94.485631
converged
Fitting Repeat 5
# weights: 103
initial value 99.202187
final value 94.485933
converged
Fitting Repeat 1
# weights: 305
initial value 95.792091
iter 10 value 94.093938
iter 20 value 94.091007
iter 30 value 85.980985
iter 40 value 81.534951
iter 50 value 81.018863
iter 60 value 81.017227
final value 81.017222
converged
Fitting Repeat 2
# weights: 305
initial value 99.029520
iter 10 value 94.488700
iter 20 value 94.484263
final value 94.484214
converged
Fitting Repeat 3
# weights: 305
initial value 100.435463
iter 10 value 94.484648
iter 20 value 94.363609
iter 30 value 94.214616
final value 94.214329
converged
Fitting Repeat 4
# weights: 305
initial value 110.123219
iter 10 value 94.488936
iter 20 value 94.484230
iter 30 value 94.416291
iter 40 value 92.649045
iter 50 value 92.039528
iter 60 value 82.151934
iter 70 value 82.149671
iter 80 value 80.407913
iter 90 value 79.772776
iter 100 value 78.649527
final value 78.649527
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.510602
iter 10 value 94.489044
iter 20 value 91.508394
iter 30 value 88.601859
iter 40 value 85.355610
iter 50 value 85.295461
iter 60 value 85.281341
iter 70 value 84.567126
iter 80 value 84.499567
iter 90 value 84.498433
iter 100 value 81.349866
final value 81.349866
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 99.858377
iter 10 value 93.549217
iter 20 value 92.794908
iter 30 value 90.383727
iter 40 value 88.365452
iter 50 value 85.752259
iter 60 value 85.740032
iter 70 value 85.733497
iter 80 value 85.651309
iter 90 value 85.192634
iter 100 value 81.643904
final value 81.643904
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.294554
iter 10 value 94.283546
iter 20 value 94.217480
iter 30 value 94.211142
iter 40 value 94.158724
final value 94.158142
converged
Fitting Repeat 3
# weights: 507
initial value 96.297265
iter 10 value 85.543313
iter 20 value 84.761875
iter 30 value 84.706239
iter 40 value 83.804087
iter 50 value 83.425073
iter 60 value 81.583563
iter 70 value 80.562448
iter 80 value 80.560662
iter 90 value 80.560354
final value 80.558836
converged
Fitting Repeat 4
# weights: 507
initial value 113.517650
iter 10 value 94.492814
iter 20 value 94.463378
iter 30 value 93.806137
iter 40 value 93.230644
iter 50 value 91.860940
final value 91.860653
converged
Fitting Repeat 5
# weights: 507
initial value 103.858895
iter 10 value 94.492166
iter 20 value 94.415395
iter 30 value 82.782295
iter 40 value 82.408670
iter 50 value 82.363683
iter 60 value 82.326119
iter 70 value 82.100938
iter 80 value 81.525227
iter 90 value 79.459357
iter 100 value 78.936700
final value 78.936700
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.824594
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.814739
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 117.967378
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 103.743522
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.158018
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.908755
iter 10 value 94.293350
iter 20 value 94.287654
final value 94.287627
converged
Fitting Repeat 2
# weights: 305
initial value 112.427702
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 114.930566
iter 10 value 92.922006
iter 20 value 92.590363
iter 30 value 92.590173
final value 92.590167
converged
Fitting Repeat 4
# weights: 305
initial value 94.958718
iter 10 value 94.305882
iter 10 value 94.305882
iter 10 value 94.305882
final value 94.305882
converged
Fitting Repeat 5
# weights: 305
initial value 99.753792
final value 94.443243
converged
Fitting Repeat 1
# weights: 507
initial value 113.287960
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 105.485780
final value 94.443243
converged
Fitting Repeat 3
# weights: 507
initial value 147.130621
iter 10 value 94.306007
final value 94.305882
converged
Fitting Repeat 4
# weights: 507
initial value 103.986377
final value 94.354286
converged
Fitting Repeat 5
# weights: 507
initial value 120.739837
iter 10 value 91.019219
iter 20 value 82.698946
iter 30 value 79.945052
iter 40 value 79.944336
final value 79.944242
converged
Fitting Repeat 1
# weights: 103
initial value 99.098632
iter 10 value 94.128972
iter 20 value 84.403505
iter 30 value 82.746566
iter 40 value 82.019781
iter 50 value 82.004082
iter 60 value 81.251062
iter 70 value 80.593441
iter 80 value 80.472495
iter 90 value 80.309730
iter 100 value 80.149463
final value 80.149463
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.403443
iter 10 value 94.488290
iter 20 value 93.707919
iter 30 value 88.623238
iter 40 value 86.182032
iter 50 value 85.512179
iter 50 value 85.512178
final value 85.512178
converged
Fitting Repeat 3
# weights: 103
initial value 97.316041
iter 10 value 93.303040
iter 20 value 88.049843
iter 30 value 87.114610
iter 40 value 86.215584
iter 50 value 86.070093
final value 86.070091
converged
Fitting Repeat 4
# weights: 103
initial value 102.037496
iter 10 value 94.488598
iter 20 value 88.947951
iter 30 value 84.556078
iter 40 value 84.286936
iter 50 value 83.847313
iter 60 value 83.122578
iter 70 value 83.027339
final value 83.027327
converged
Fitting Repeat 5
# weights: 103
initial value 97.295264
iter 10 value 94.402848
iter 20 value 90.355512
iter 30 value 83.154882
iter 40 value 82.734201
iter 50 value 81.069924
iter 60 value 80.656896
iter 70 value 80.499591
iter 80 value 80.303447
final value 80.300755
converged
Fitting Repeat 1
# weights: 305
initial value 113.685093
iter 10 value 94.748492
iter 20 value 87.034515
iter 30 value 83.867200
iter 40 value 83.457093
iter 50 value 82.819180
iter 60 value 82.329506
iter 70 value 81.945791
iter 80 value 81.786597
iter 90 value 81.281890
iter 100 value 81.189194
final value 81.189194
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.936071
iter 10 value 94.469441
iter 20 value 87.956910
iter 30 value 87.415042
iter 40 value 85.193283
iter 50 value 83.765372
iter 60 value 83.085737
iter 70 value 82.964768
iter 80 value 82.881214
iter 90 value 82.446081
iter 100 value 80.985515
final value 80.985515
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 113.797149
iter 10 value 94.404943
iter 20 value 92.193840
iter 30 value 91.352287
iter 40 value 85.846943
iter 50 value 83.679236
iter 60 value 83.344706
iter 70 value 81.906213
iter 80 value 80.974637
iter 90 value 80.684687
iter 100 value 80.267813
final value 80.267813
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.541639
iter 10 value 94.495741
iter 20 value 89.582139
iter 30 value 86.744835
iter 40 value 84.858493
iter 50 value 83.634755
iter 60 value 83.603921
iter 70 value 83.366049
iter 80 value 80.854698
iter 90 value 80.163865
iter 100 value 80.026132
final value 80.026132
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.044309
iter 10 value 95.436148
iter 20 value 91.610817
iter 30 value 89.438813
iter 40 value 85.118594
iter 50 value 84.514599
iter 60 value 83.990320
iter 70 value 83.963759
iter 80 value 83.888639
iter 90 value 83.654610
iter 100 value 83.581844
final value 83.581844
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.984784
iter 10 value 94.662814
iter 20 value 90.982179
iter 30 value 86.476580
iter 40 value 85.987993
iter 50 value 84.205727
iter 60 value 82.902981
iter 70 value 82.541468
iter 80 value 82.469357
iter 90 value 81.353078
iter 100 value 79.911839
final value 79.911839
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.457530
iter 10 value 94.464864
iter 20 value 90.343003
iter 30 value 84.372652
iter 40 value 83.502252
iter 50 value 82.985020
iter 60 value 81.900217
iter 70 value 80.634456
iter 80 value 80.354100
iter 90 value 79.931636
iter 100 value 79.671050
final value 79.671050
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.964709
iter 10 value 94.438443
iter 20 value 89.719594
iter 30 value 86.784103
iter 40 value 84.969923
iter 50 value 83.155530
iter 60 value 81.013298
iter 70 value 80.532021
iter 80 value 80.249880
iter 90 value 79.572609
iter 100 value 78.681643
final value 78.681643
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.192256
iter 10 value 94.794768
iter 20 value 92.666846
iter 30 value 91.213716
iter 40 value 85.146788
iter 50 value 83.154831
iter 60 value 82.066275
iter 70 value 80.619389
iter 80 value 80.311038
iter 90 value 79.631575
iter 100 value 79.142588
final value 79.142588
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 120.859209
iter 10 value 94.666088
iter 20 value 92.883261
iter 30 value 86.947599
iter 40 value 84.895931
iter 50 value 82.627245
iter 60 value 81.264252
iter 70 value 80.082452
iter 80 value 79.180571
iter 90 value 78.291555
iter 100 value 78.079045
final value 78.079045
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.435030
final value 94.485740
converged
Fitting Repeat 2
# weights: 103
initial value 96.868911
iter 10 value 94.486511
final value 94.484909
converged
Fitting Repeat 3
# weights: 103
initial value 97.682270
final value 94.486010
converged
Fitting Repeat 4
# weights: 103
initial value 97.247358
iter 10 value 94.445009
iter 20 value 94.443664
final value 94.443458
converged
Fitting Repeat 5
# weights: 103
initial value 94.927212
final value 94.485836
converged
Fitting Repeat 1
# weights: 305
initial value 97.518114
iter 10 value 94.487776
iter 20 value 92.825540
iter 30 value 85.059628
iter 40 value 84.357835
iter 50 value 83.917343
iter 60 value 81.228733
iter 70 value 81.088400
iter 80 value 81.031811
iter 90 value 81.030013
final value 81.029828
converged
Fitting Repeat 2
# weights: 305
initial value 103.769632
iter 10 value 94.448573
iter 20 value 94.184215
iter 30 value 86.533199
iter 40 value 86.524292
iter 50 value 86.183125
iter 60 value 84.771687
iter 70 value 80.022315
iter 80 value 78.437891
iter 90 value 78.047016
iter 100 value 77.502829
final value 77.502829
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 95.025386
iter 10 value 94.404677
iter 20 value 90.612354
iter 30 value 90.094663
iter 40 value 89.601858
final value 89.601776
converged
Fitting Repeat 4
# weights: 305
initial value 113.912376
iter 10 value 94.406736
iter 20 value 94.404697
iter 30 value 94.400497
iter 40 value 93.808857
iter 50 value 88.610139
iter 60 value 82.740526
iter 70 value 82.740190
iter 80 value 81.648853
iter 90 value 81.364722
iter 100 value 80.967305
final value 80.967305
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 94.736052
iter 10 value 94.359263
iter 20 value 94.326786
iter 30 value 94.306346
final value 94.306298
converged
Fitting Repeat 1
# weights: 507
initial value 98.650314
iter 10 value 94.408237
iter 20 value 88.148075
iter 30 value 85.595583
iter 40 value 82.460524
iter 50 value 81.824693
iter 60 value 81.823320
iter 70 value 81.812447
iter 80 value 81.810884
iter 90 value 81.809524
iter 100 value 81.806690
final value 81.806690
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 101.706945
iter 10 value 94.492659
iter 20 value 94.393632
iter 30 value 94.330926
iter 40 value 94.214444
iter 50 value 85.752042
iter 60 value 85.707534
iter 70 value 82.803395
iter 80 value 80.794176
iter 90 value 80.747013
iter 100 value 80.746472
final value 80.746472
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.405923
iter 10 value 94.493191
iter 20 value 94.466089
iter 30 value 92.792700
final value 92.628785
converged
Fitting Repeat 4
# weights: 507
initial value 96.392755
iter 10 value 94.451334
iter 20 value 94.448462
final value 94.447894
converged
Fitting Repeat 5
# weights: 507
initial value 96.363967
iter 10 value 94.451525
iter 20 value 91.381404
iter 30 value 86.049988
iter 40 value 85.997318
iter 50 value 85.994676
iter 60 value 85.950582
iter 70 value 84.583186
iter 80 value 80.685800
iter 90 value 79.772266
final value 79.748230
converged
Fitting Repeat 1
# weights: 103
initial value 112.854990
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.648926
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 106.748875
iter 10 value 94.052582
final value 94.052434
converged
Fitting Repeat 4
# weights: 103
initial value 109.889696
final value 94.275363
converged
Fitting Repeat 5
# weights: 103
initial value 111.435756
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.460126
final value 94.275362
converged
Fitting Repeat 2
# weights: 305
initial value 107.724888
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 104.707738
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 100.094159
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.706699
iter 10 value 94.402440
iter 10 value 94.402439
iter 10 value 94.402439
final value 94.402439
converged
Fitting Repeat 1
# weights: 507
initial value 107.119298
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 102.074227
iter 10 value 92.080683
iter 20 value 91.519398
iter 30 value 91.330552
iter 40 value 91.329353
final value 91.329329
converged
Fitting Repeat 3
# weights: 507
initial value 107.136277
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 104.418339
final value 94.244048
converged
Fitting Repeat 5
# weights: 507
initial value 109.630877
iter 10 value 93.531077
iter 20 value 92.900234
iter 30 value 92.792758
iter 40 value 91.280434
final value 91.215847
converged
Fitting Repeat 1
# weights: 103
initial value 101.405834
iter 10 value 93.740132
iter 20 value 88.098800
iter 30 value 87.617546
iter 40 value 87.171616
iter 50 value 87.070205
iter 60 value 85.409350
iter 70 value 84.386552
iter 80 value 84.159256
iter 90 value 84.004382
iter 100 value 83.910081
final value 83.910081
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.390932
iter 10 value 94.470293
iter 20 value 92.686003
iter 30 value 87.664632
iter 40 value 86.290966
iter 50 value 85.570900
iter 60 value 84.546934
iter 70 value 84.286299
iter 80 value 84.060817
iter 90 value 83.928546
iter 100 value 83.881834
final value 83.881834
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.617518
iter 10 value 94.488530
iter 20 value 94.247481
iter 30 value 90.098510
iter 40 value 88.016742
iter 50 value 87.464338
iter 60 value 86.764634
iter 70 value 85.299367
iter 80 value 84.330394
iter 90 value 84.141587
iter 100 value 83.935226
final value 83.935226
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.438511
iter 10 value 93.980114
iter 20 value 92.344518
iter 30 value 91.733914
iter 40 value 87.423202
iter 50 value 86.803307
iter 60 value 84.471032
iter 70 value 83.946820
iter 80 value 83.845680
iter 90 value 83.831014
iter 100 value 83.805702
final value 83.805702
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.520159
iter 10 value 94.482220
iter 20 value 94.221864
iter 30 value 93.575245
iter 40 value 88.836949
iter 50 value 85.384337
iter 60 value 84.894308
iter 70 value 84.522078
iter 80 value 84.129703
iter 90 value 83.804320
iter 100 value 83.740471
final value 83.740471
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.389723
iter 10 value 94.490834
iter 20 value 94.393677
iter 30 value 94.120563
iter 40 value 92.264100
iter 50 value 87.933680
iter 60 value 86.770875
iter 70 value 85.679598
iter 80 value 85.270879
iter 90 value 85.050603
iter 100 value 84.489619
final value 84.489619
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.492090
iter 10 value 94.591276
iter 20 value 87.852201
iter 30 value 87.092788
iter 40 value 85.725703
iter 50 value 85.064371
iter 60 value 84.774844
iter 70 value 83.979193
iter 80 value 83.757712
iter 90 value 83.532267
iter 100 value 83.063508
final value 83.063508
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.393692
iter 10 value 94.514230
iter 20 value 94.257844
iter 30 value 93.973825
iter 40 value 90.414068
iter 50 value 86.688565
iter 60 value 85.705579
iter 70 value 84.803154
iter 80 value 84.314995
iter 90 value 83.698097
iter 100 value 83.374037
final value 83.374037
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 115.841868
iter 10 value 93.181026
iter 20 value 87.497121
iter 30 value 87.039557
iter 40 value 84.549478
iter 50 value 84.296257
iter 60 value 84.109409
iter 70 value 83.956993
iter 80 value 83.108522
iter 90 value 82.836586
iter 100 value 82.486811
final value 82.486811
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.758341
iter 10 value 94.160595
iter 20 value 87.846193
iter 30 value 87.578727
iter 40 value 85.538863
iter 50 value 84.307847
iter 60 value 83.416913
iter 70 value 82.885614
iter 80 value 82.682141
iter 90 value 82.641968
iter 100 value 82.621310
final value 82.621310
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 117.856687
iter 10 value 94.160624
iter 20 value 88.088125
iter 30 value 85.605402
iter 40 value 84.896540
iter 50 value 84.128941
iter 60 value 83.630150
iter 70 value 83.420947
iter 80 value 83.065767
iter 90 value 82.999720
iter 100 value 82.840572
final value 82.840572
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.620311
iter 10 value 94.066429
iter 20 value 88.031392
iter 30 value 87.453259
iter 40 value 84.915702
iter 50 value 84.379595
iter 60 value 84.258036
iter 70 value 84.096043
iter 80 value 83.978022
iter 90 value 83.796584
iter 100 value 83.538099
final value 83.538099
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.581378
iter 10 value 94.175593
iter 20 value 89.944117
iter 30 value 86.770526
iter 40 value 85.429106
iter 50 value 85.098674
iter 60 value 84.812686
iter 70 value 83.506181
iter 80 value 82.981843
iter 90 value 82.494846
iter 100 value 82.399079
final value 82.399079
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.584485
iter 10 value 96.783805
iter 20 value 94.339113
iter 30 value 86.914650
iter 40 value 85.723330
iter 50 value 85.465470
iter 60 value 83.944730
iter 70 value 83.031404
iter 80 value 82.949788
iter 90 value 82.729220
iter 100 value 82.679995
final value 82.679995
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.247819
iter 10 value 94.791007
iter 20 value 94.261721
iter 30 value 91.729012
iter 40 value 90.505989
iter 50 value 88.782911
iter 60 value 87.475659
iter 70 value 84.318766
iter 80 value 83.874208
iter 90 value 82.982128
iter 100 value 82.893122
final value 82.893122
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.719912
final value 94.462156
converged
Fitting Repeat 2
# weights: 103
initial value 96.508161
final value 94.485937
converged
Fitting Repeat 3
# weights: 103
initial value 106.812107
iter 10 value 94.092981
iter 20 value 94.090021
iter 30 value 94.089020
iter 40 value 93.770619
iter 50 value 89.562528
iter 60 value 86.430796
iter 70 value 86.065333
iter 80 value 85.578838
iter 90 value 85.025861
iter 100 value 84.761753
final value 84.761753
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.951861
final value 94.485875
converged
Fitting Repeat 5
# weights: 103
initial value 96.306439
final value 94.485786
converged
Fitting Repeat 1
# weights: 305
initial value 103.924875
iter 10 value 94.489256
iter 20 value 94.484256
final value 94.484210
converged
Fitting Repeat 2
# weights: 305
initial value 101.861007
iter 10 value 91.822670
iter 20 value 91.109687
iter 30 value 91.107951
final value 91.105515
converged
Fitting Repeat 3
# weights: 305
initial value 97.551189
iter 10 value 94.277810
iter 20 value 94.056810
iter 30 value 94.053092
iter 40 value 90.026834
iter 50 value 88.079733
final value 88.079086
converged
Fitting Repeat 4
# weights: 305
initial value 95.678826
iter 10 value 92.027406
iter 20 value 91.097293
iter 30 value 91.093296
iter 40 value 90.954131
iter 50 value 89.820676
iter 60 value 84.483729
iter 70 value 84.141359
iter 80 value 83.069615
iter 90 value 82.415272
iter 100 value 81.230812
final value 81.230812
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 117.636428
iter 10 value 94.518626
iter 20 value 94.252467
iter 30 value 94.078466
iter 40 value 94.022746
iter 50 value 94.007206
iter 60 value 93.954772
iter 70 value 93.952725
iter 70 value 93.952725
final value 93.952725
converged
Fitting Repeat 1
# weights: 507
initial value 96.863749
iter 10 value 94.061627
iter 20 value 94.021529
iter 30 value 94.014420
iter 40 value 93.960613
iter 50 value 93.823013
iter 60 value 90.417671
iter 70 value 89.722430
iter 80 value 89.714710
iter 90 value 89.711081
iter 100 value 89.710761
final value 89.710761
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.511621
iter 10 value 94.469600
iter 20 value 93.279917
iter 30 value 86.744140
iter 40 value 86.640568
iter 50 value 86.618456
iter 60 value 86.608888
iter 70 value 86.426792
iter 80 value 85.756620
iter 90 value 85.729040
iter 100 value 85.492686
final value 85.492686
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.604624
iter 10 value 92.880416
iter 20 value 86.869449
iter 30 value 86.849849
iter 40 value 86.720793
final value 86.719257
converged
Fitting Repeat 4
# weights: 507
initial value 94.313594
iter 10 value 94.283655
iter 20 value 94.277838
iter 30 value 91.949155
iter 40 value 90.730768
iter 50 value 90.670206
iter 60 value 87.766410
iter 70 value 84.455100
iter 80 value 84.411825
iter 90 value 84.410920
iter 100 value 84.405481
final value 84.405481
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.631550
iter 10 value 94.347168
iter 20 value 93.930268
iter 30 value 86.853608
iter 40 value 85.016874
iter 50 value 84.934369
iter 60 value 84.930625
final value 84.930256
converged
Fitting Repeat 1
# weights: 507
initial value 178.179844
iter 10 value 117.936975
iter 20 value 113.550495
iter 30 value 109.761989
iter 40 value 107.530293
iter 50 value 103.521129
iter 60 value 102.728135
iter 70 value 102.182772
iter 80 value 101.805559
iter 90 value 101.498027
iter 100 value 100.925884
final value 100.925884
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 182.603389
iter 10 value 118.566731
iter 20 value 117.623382
iter 30 value 111.441098
iter 40 value 106.835963
iter 50 value 105.332265
iter 60 value 104.364900
iter 70 value 102.439433
iter 80 value 102.083640
iter 90 value 101.845648
iter 100 value 101.104514
final value 101.104514
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 133.457116
iter 10 value 118.051680
iter 20 value 110.768611
iter 30 value 108.833921
iter 40 value 107.149280
iter 50 value 103.839656
iter 60 value 103.295990
iter 70 value 101.752720
iter 80 value 101.230289
iter 90 value 100.977544
iter 100 value 100.834630
final value 100.834630
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 169.721675
iter 10 value 116.520807
iter 20 value 114.251784
iter 30 value 110.738370
iter 40 value 106.290781
iter 50 value 106.050503
iter 60 value 105.918996
iter 70 value 105.741496
iter 80 value 105.372444
iter 90 value 105.161400
iter 100 value 104.553884
final value 104.553884
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 153.594282
iter 10 value 118.470981
iter 20 value 108.400755
iter 30 value 107.128141
iter 40 value 105.542715
iter 50 value 102.990814
iter 60 value 102.024337
iter 70 value 101.465468
iter 80 value 101.366920
iter 90 value 101.114592
iter 100 value 100.980178
final value 100.980178
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Sat Mar 21 00:37:37 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
41.181 1.251 113.213
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.525 | 0.535 | 34.111 | |
| FreqInteractors | 0.441 | 0.031 | 0.474 | |
| calculateAAC | 0.032 | 0.000 | 0.032 | |
| calculateAutocor | 0.275 | 0.016 | 0.290 | |
| calculateCTDC | 0.078 | 0.000 | 0.079 | |
| calculateCTDD | 0.467 | 0.002 | 0.470 | |
| calculateCTDT | 0.146 | 0.001 | 0.146 | |
| calculateCTriad | 0.413 | 0.009 | 0.421 | |
| calculateDC | 0.090 | 0.009 | 0.099 | |
| calculateF | 0.345 | 0.001 | 0.350 | |
| calculateKSAAP | 0.107 | 0.007 | 0.115 | |
| calculateQD_Sm | 1.877 | 0.025 | 1.902 | |
| calculateTC | 1.560 | 0.139 | 1.698 | |
| calculateTC_Sm | 0.295 | 0.005 | 0.300 | |
| corr_plot | 34.671 | 0.362 | 35.096 | |
| enrichfindP | 0.591 | 0.046 | 20.016 | |
| enrichfind_hp | 0.063 | 0.000 | 2.007 | |
| enrichplot | 0.498 | 0.000 | 0.498 | |
| filter_missing_values | 0.001 | 0.001 | 0.001 | |
| getFASTA | 0.436 | 0.011 | 2.933 | |
| getHPI | 0.000 | 0.002 | 0.001 | |
| get_negativePPI | 0.002 | 0.001 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.001 | 0.003 | |
| plotPPI | 0.123 | 0.000 | 0.124 | |
| pred_ensembel | 12.810 | 0.100 | 11.611 | |
| var_imp | 35.845 | 0.616 | 37.290 | |