| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-12 11:33 -0400 (Thu, 12 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4806 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1009/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-12 00:17:44 -0400 (Thu, 12 Mar 2026) |
| EndedAt: 2026-03-12 00:32:37 -0400 (Thu, 12 Mar 2026) |
| EllapsedTime: 893.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-12 04:17:44 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 33.732 0.319 34.052
var_imp 33.240 0.473 33.715
FSmethod 32.654 0.630 33.288
pred_ensembel 12.567 0.111 11.373
enrichfindP 0.562 0.050 12.569
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 99.704923
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.313157
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.810481
iter 10 value 94.443275
final value 94.443243
converged
Fitting Repeat 4
# weights: 103
initial value 95.123160
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.174300
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.997437
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 106.892079
iter 10 value 94.483605
iter 20 value 86.685397
final value 86.520651
converged
Fitting Repeat 3
# weights: 305
initial value 96.083810
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 106.681826
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 106.262358
iter 10 value 93.733931
iter 20 value 93.650026
final value 93.649861
converged
Fitting Repeat 1
# weights: 507
initial value 110.927976
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 119.483429
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 101.306463
final value 94.443243
converged
Fitting Repeat 4
# weights: 507
initial value 107.220076
final value 94.443243
converged
Fitting Repeat 5
# weights: 507
initial value 94.999484
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 107.303077
iter 10 value 94.467284
iter 20 value 94.149973
iter 30 value 90.343640
iter 40 value 89.726382
iter 50 value 89.663636
iter 60 value 89.651834
iter 70 value 89.648661
iter 80 value 89.643433
final value 89.643299
converged
Fitting Repeat 2
# weights: 103
initial value 120.775670
iter 10 value 93.675631
iter 20 value 85.401746
iter 30 value 84.726316
iter 40 value 83.392771
iter 50 value 82.375834
iter 60 value 82.319299
iter 70 value 82.291980
final value 82.291761
converged
Fitting Repeat 3
# weights: 103
initial value 104.721108
iter 10 value 94.397064
iter 20 value 91.241889
iter 30 value 90.689511
iter 40 value 90.079555
iter 50 value 89.693744
iter 60 value 89.643223
final value 89.643213
converged
Fitting Repeat 4
# weights: 103
initial value 96.292026
iter 10 value 94.292947
iter 20 value 86.819973
iter 30 value 83.330441
iter 40 value 82.850148
iter 50 value 82.025711
iter 60 value 81.774070
iter 70 value 81.684935
final value 81.684843
converged
Fitting Repeat 5
# weights: 103
initial value 96.391111
iter 10 value 94.444605
iter 20 value 90.604244
iter 30 value 87.791488
iter 40 value 83.476857
iter 50 value 83.402069
iter 60 value 82.968797
iter 70 value 82.694818
iter 80 value 82.692400
iter 90 value 82.673839
iter 100 value 82.659583
final value 82.659583
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 113.670153
iter 10 value 90.869895
iter 20 value 83.401677
iter 30 value 82.471233
iter 40 value 82.146600
iter 50 value 81.835841
iter 60 value 81.790957
iter 70 value 81.755544
iter 80 value 81.719970
iter 90 value 81.662913
iter 100 value 81.323462
final value 81.323462
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.411351
iter 10 value 94.523228
iter 20 value 90.612106
iter 30 value 86.784300
iter 40 value 86.422958
iter 50 value 85.057228
iter 60 value 81.570660
iter 70 value 80.491512
iter 80 value 80.076763
iter 90 value 79.986179
iter 100 value 79.831378
final value 79.831378
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.075513
iter 10 value 94.497220
iter 20 value 94.262034
iter 30 value 87.471935
iter 40 value 83.916253
iter 50 value 83.321694
iter 60 value 82.920978
iter 70 value 80.612106
iter 80 value 80.452835
iter 90 value 80.105742
iter 100 value 79.499273
final value 79.499273
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 118.792721
iter 10 value 94.543201
iter 20 value 94.427346
iter 30 value 92.070422
iter 40 value 88.929330
iter 50 value 82.649240
iter 60 value 81.590053
iter 70 value 81.273139
iter 80 value 80.671524
iter 90 value 80.269314
iter 100 value 80.215796
final value 80.215796
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 115.365315
iter 10 value 94.485688
iter 20 value 94.160752
iter 30 value 90.773100
iter 40 value 85.497515
iter 50 value 84.689288
iter 60 value 82.815765
iter 70 value 82.587870
iter 80 value 82.457672
iter 90 value 81.804261
iter 100 value 80.644937
final value 80.644937
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 116.047344
iter 10 value 96.012718
iter 20 value 90.247487
iter 30 value 85.529278
iter 40 value 84.758231
iter 50 value 83.502781
iter 60 value 81.375671
iter 70 value 81.262487
iter 80 value 81.073650
iter 90 value 80.276962
iter 100 value 79.862160
final value 79.862160
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.171579
iter 10 value 94.440016
iter 20 value 92.586283
iter 30 value 86.794865
iter 40 value 85.530934
iter 50 value 81.754772
iter 60 value 80.571383
iter 70 value 80.077520
iter 80 value 79.765910
iter 90 value 79.548392
iter 100 value 79.248256
final value 79.248256
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.649507
iter 10 value 94.195734
iter 20 value 92.013091
iter 30 value 85.283319
iter 40 value 82.290858
iter 50 value 81.746142
iter 60 value 81.147177
iter 70 value 80.545136
iter 80 value 80.369543
iter 90 value 80.014929
iter 100 value 79.944209
final value 79.944209
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.845976
iter 10 value 94.399134
iter 20 value 88.453522
iter 30 value 81.820583
iter 40 value 80.932532
iter 50 value 80.271454
iter 60 value 79.827185
iter 70 value 79.633867
iter 80 value 79.302457
iter 90 value 79.118690
iter 100 value 79.085285
final value 79.085285
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.007070
iter 10 value 91.041353
iter 20 value 87.643523
iter 30 value 86.004996
iter 40 value 84.240251
iter 50 value 83.133496
iter 60 value 82.432064
iter 70 value 80.196535
iter 80 value 79.590415
iter 90 value 79.324158
iter 100 value 79.230539
final value 79.230539
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 108.232040
final value 94.485874
converged
Fitting Repeat 2
# weights: 103
initial value 100.266062
final value 94.488084
converged
Fitting Repeat 3
# weights: 103
initial value 107.496918
final value 94.486072
converged
Fitting Repeat 4
# weights: 103
initial value 95.266036
final value 94.485962
converged
Fitting Repeat 5
# weights: 103
initial value 98.028859
final value 94.485774
converged
Fitting Repeat 1
# weights: 305
initial value 98.852722
iter 10 value 94.331230
iter 20 value 94.326617
iter 30 value 94.326267
final value 94.326245
converged
Fitting Repeat 2
# weights: 305
initial value 96.164375
iter 10 value 94.488339
iter 20 value 93.838248
iter 30 value 91.962955
iter 40 value 91.959266
iter 50 value 91.958359
iter 60 value 90.480610
iter 70 value 82.828264
iter 80 value 81.941840
iter 90 value 81.924735
iter 100 value 81.921134
final value 81.921134
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 112.139496
iter 10 value 87.510579
iter 20 value 82.633073
iter 30 value 82.619826
final value 82.329981
converged
Fitting Repeat 4
# weights: 305
initial value 99.140663
iter 10 value 94.488339
iter 20 value 93.629928
iter 30 value 87.167980
iter 40 value 86.732225
iter 50 value 86.731995
iter 60 value 86.731671
iter 70 value 84.249451
iter 80 value 84.185476
iter 90 value 83.780211
iter 100 value 83.620973
final value 83.620973
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 126.974951
iter 10 value 93.913173
iter 20 value 83.927766
iter 30 value 82.735267
iter 40 value 81.524679
iter 50 value 81.486920
iter 60 value 81.484012
iter 70 value 79.735727
iter 80 value 79.563590
iter 90 value 79.517848
iter 100 value 79.473120
final value 79.473120
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.049069
iter 10 value 94.452104
iter 20 value 94.445742
iter 30 value 94.444872
iter 40 value 93.103115
iter 50 value 82.852249
iter 60 value 82.804711
iter 70 value 82.333380
iter 80 value 82.238268
iter 90 value 82.196179
iter 100 value 82.196030
final value 82.196030
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 94.837858
iter 10 value 94.451317
iter 20 value 94.375880
iter 30 value 92.126200
iter 40 value 91.932655
iter 50 value 85.440372
iter 60 value 81.679463
iter 70 value 81.630771
iter 80 value 81.629968
iter 90 value 81.629329
final value 81.629234
converged
Fitting Repeat 3
# weights: 507
initial value 96.956847
iter 10 value 94.334042
iter 20 value 93.751610
iter 30 value 93.612576
iter 40 value 91.921957
iter 50 value 91.199293
iter 60 value 91.081632
final value 91.079591
converged
Fitting Repeat 4
# weights: 507
initial value 95.788814
iter 10 value 94.148096
iter 20 value 94.145685
iter 30 value 93.950928
iter 40 value 93.948482
iter 50 value 93.943503
iter 60 value 93.069079
iter 70 value 91.498225
iter 80 value 90.840341
final value 90.800339
converged
Fitting Repeat 5
# weights: 507
initial value 121.160102
iter 10 value 94.294164
iter 20 value 94.260882
iter 30 value 94.255923
iter 40 value 94.229927
final value 94.229923
converged
Fitting Repeat 1
# weights: 103
initial value 94.082791
iter 10 value 83.835820
final value 83.783302
converged
Fitting Repeat 2
# weights: 103
initial value 98.432788
final value 94.354396
converged
Fitting Repeat 3
# weights: 103
initial value 95.446148
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 101.656295
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.588067
final value 94.484214
converged
Fitting Repeat 1
# weights: 305
initial value 99.896265
final value 94.323810
converged
Fitting Repeat 2
# weights: 305
initial value 98.605249
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 98.450876
iter 10 value 93.037881
final value 93.037879
converged
Fitting Repeat 4
# weights: 305
initial value 100.821931
final value 94.354396
converged
Fitting Repeat 5
# weights: 305
initial value 97.733416
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 95.800226
iter 10 value 94.338745
iter 10 value 94.338745
iter 10 value 94.338745
final value 94.338745
converged
Fitting Repeat 2
# weights: 507
initial value 98.032476
final value 94.354396
converged
Fitting Repeat 3
# weights: 507
initial value 92.617052
iter 10 value 82.422853
iter 20 value 82.370900
iter 30 value 82.366698
iter 40 value 82.366640
iter 40 value 82.366639
iter 40 value 82.366639
final value 82.366639
converged
Fitting Repeat 4
# weights: 507
initial value 127.887073
iter 10 value 95.127765
iter 20 value 93.439467
final value 93.439442
converged
Fitting Repeat 5
# weights: 507
initial value 98.157841
iter 10 value 94.167835
iter 20 value 86.082223
iter 30 value 82.374501
iter 40 value 82.017580
iter 50 value 81.310875
iter 60 value 80.539450
iter 70 value 80.505258
iter 80 value 80.505046
iter 80 value 80.505046
iter 80 value 80.505046
final value 80.505046
converged
Fitting Repeat 1
# weights: 103
initial value 103.993510
iter 10 value 94.486538
iter 20 value 92.971351
iter 30 value 92.445387
iter 40 value 92.340884
iter 50 value 92.329537
iter 60 value 92.328373
iter 70 value 92.328191
iter 80 value 86.665096
iter 90 value 84.324740
iter 100 value 83.575469
final value 83.575469
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.590044
iter 10 value 94.486599
iter 20 value 94.290307
iter 30 value 94.193797
iter 40 value 94.139968
iter 50 value 90.219226
iter 60 value 87.173613
iter 70 value 82.448284
iter 80 value 81.533451
iter 90 value 80.885774
iter 100 value 79.500713
final value 79.500713
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 101.284031
iter 10 value 94.348478
iter 20 value 86.175068
iter 30 value 85.531022
iter 40 value 84.051055
iter 50 value 83.452065
iter 60 value 83.093749
iter 70 value 82.925381
final value 82.925363
converged
Fitting Repeat 4
# weights: 103
initial value 96.869695
iter 10 value 94.434237
iter 20 value 87.888604
iter 30 value 84.851424
iter 40 value 83.422916
iter 50 value 83.254073
iter 60 value 83.044438
iter 70 value 82.935958
final value 82.925363
converged
Fitting Repeat 5
# weights: 103
initial value 100.337712
iter 10 value 94.464466
iter 20 value 88.897826
iter 30 value 87.674570
iter 40 value 85.524095
iter 50 value 83.567248
iter 60 value 83.351260
final value 83.345310
converged
Fitting Repeat 1
# weights: 305
initial value 121.648205
iter 10 value 94.494534
iter 20 value 94.397657
iter 30 value 90.786232
iter 40 value 85.005058
iter 50 value 80.239002
iter 60 value 77.615298
iter 70 value 76.566433
iter 80 value 76.063233
iter 90 value 76.023083
iter 100 value 75.888651
final value 75.888651
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 125.146731
iter 10 value 94.372604
iter 20 value 92.261684
iter 30 value 87.072504
iter 40 value 84.350777
iter 50 value 83.063194
iter 60 value 80.531403
iter 70 value 78.793555
iter 80 value 76.787597
iter 90 value 76.135374
iter 100 value 75.461239
final value 75.461239
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.306566
iter 10 value 91.373286
iter 20 value 86.054799
iter 30 value 83.867639
iter 40 value 82.533932
iter 50 value 82.193252
iter 60 value 82.134454
iter 70 value 82.079850
iter 80 value 82.005252
iter 90 value 81.666656
iter 100 value 79.049664
final value 79.049664
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.193790
iter 10 value 94.484072
iter 20 value 88.297059
iter 30 value 83.147526
iter 40 value 82.785550
iter 50 value 82.480229
iter 60 value 81.795746
iter 70 value 81.726525
final value 81.725714
converged
Fitting Repeat 5
# weights: 305
initial value 109.268450
iter 10 value 95.702273
iter 20 value 87.651630
iter 30 value 85.595350
iter 40 value 85.271111
iter 50 value 84.063605
iter 60 value 79.823621
iter 70 value 77.390443
iter 80 value 76.750487
iter 90 value 76.705918
iter 100 value 76.586935
final value 76.586935
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.525889
iter 10 value 94.766866
iter 20 value 94.047178
iter 30 value 83.602922
iter 40 value 80.678087
iter 50 value 79.886091
iter 60 value 78.279538
iter 70 value 77.478515
iter 80 value 76.805148
iter 90 value 76.677059
iter 100 value 76.450827
final value 76.450827
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.755551
iter 10 value 94.762756
iter 20 value 93.951726
iter 30 value 85.189069
iter 40 value 83.695772
iter 50 value 81.664928
iter 60 value 81.383753
iter 70 value 79.422963
iter 80 value 78.936355
iter 90 value 78.187477
iter 100 value 77.685193
final value 77.685193
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 123.865572
iter 10 value 94.612633
iter 20 value 93.825739
iter 30 value 91.142379
iter 40 value 87.984603
iter 50 value 84.257709
iter 60 value 81.398142
iter 70 value 77.903698
iter 80 value 76.423139
iter 90 value 75.552221
iter 100 value 75.294989
final value 75.294989
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.379148
iter 10 value 94.789247
iter 20 value 93.301309
iter 30 value 91.816532
iter 40 value 88.208442
iter 50 value 83.772979
iter 60 value 83.174528
iter 70 value 81.618687
iter 80 value 80.100039
iter 90 value 79.802140
iter 100 value 78.383735
final value 78.383735
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.222993
iter 10 value 94.526683
iter 20 value 94.422382
iter 30 value 94.241138
iter 40 value 88.212695
iter 50 value 85.708863
iter 60 value 85.571464
iter 70 value 80.165634
iter 80 value 79.629559
iter 90 value 78.219368
iter 100 value 76.498946
final value 76.498946
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.084847
final value 94.355941
converged
Fitting Repeat 2
# weights: 103
initial value 94.923077
final value 94.486055
converged
Fitting Repeat 3
# weights: 103
initial value 95.805831
iter 10 value 94.486043
iter 20 value 94.483806
iter 30 value 86.565718
iter 30 value 86.565718
iter 30 value 86.565718
final value 86.565718
converged
Fitting Repeat 4
# weights: 103
initial value 109.402878
final value 94.485926
converged
Fitting Repeat 5
# weights: 103
initial value 96.676153
iter 10 value 94.356234
iter 20 value 94.355027
iter 30 value 94.354615
final value 94.354610
converged
Fitting Repeat 1
# weights: 305
initial value 113.011702
iter 10 value 94.359294
iter 20 value 94.355438
iter 30 value 94.139695
iter 40 value 83.794280
iter 50 value 83.788043
iter 60 value 83.779527
iter 70 value 83.778614
iter 80 value 83.777677
iter 90 value 83.682789
iter 100 value 83.508918
final value 83.508918
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 112.789718
iter 10 value 93.706665
iter 20 value 93.702632
final value 93.702172
converged
Fitting Repeat 3
# weights: 305
initial value 97.456721
iter 10 value 94.488946
iter 20 value 94.484283
final value 94.484271
converged
Fitting Repeat 4
# weights: 305
initial value 99.568172
iter 10 value 94.359608
iter 20 value 94.354695
final value 94.354503
converged
Fitting Repeat 5
# weights: 305
initial value 97.966848
iter 10 value 94.358503
iter 20 value 94.355009
iter 30 value 94.314399
iter 40 value 82.662146
iter 50 value 82.630915
iter 60 value 82.311019
iter 70 value 82.308260
iter 80 value 82.306553
final value 82.306393
converged
Fitting Repeat 1
# weights: 507
initial value 98.422850
iter 10 value 94.493267
iter 20 value 94.413941
iter 30 value 86.854237
iter 40 value 79.644278
iter 50 value 78.852837
iter 60 value 78.123059
iter 70 value 77.618863
iter 80 value 77.554493
final value 77.544325
converged
Fitting Repeat 2
# weights: 507
initial value 101.641299
iter 10 value 94.492108
iter 20 value 93.999266
iter 30 value 86.389060
iter 40 value 83.685728
iter 50 value 80.106378
iter 60 value 78.878269
iter 70 value 76.588382
iter 80 value 76.278129
iter 90 value 76.126551
iter 100 value 75.713280
final value 75.713280
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.035416
iter 10 value 94.346762
iter 20 value 94.334300
iter 30 value 94.314051
iter 40 value 94.311466
iter 50 value 84.630169
iter 60 value 83.025007
iter 70 value 83.024433
iter 80 value 82.920665
iter 90 value 81.874208
iter 100 value 81.647455
final value 81.647455
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 100.636099
iter 10 value 82.670946
iter 20 value 81.284970
final value 81.274005
converged
Fitting Repeat 5
# weights: 507
initial value 96.649062
iter 10 value 93.722415
iter 20 value 93.700774
iter 30 value 93.694294
iter 40 value 93.693331
iter 40 value 93.693330
final value 93.693326
converged
Fitting Repeat 1
# weights: 103
initial value 98.478848
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.097727
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.390181
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.282736
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.699388
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 109.973242
iter 10 value 92.966636
iter 20 value 87.951730
final value 87.951515
converged
Fitting Repeat 2
# weights: 305
initial value 102.869767
iter 10 value 88.883352
iter 20 value 88.644228
iter 30 value 88.644140
iter 30 value 88.644139
iter 30 value 88.644139
final value 88.644139
converged
Fitting Repeat 3
# weights: 305
initial value 103.263997
iter 10 value 94.437144
iter 20 value 94.436658
iter 30 value 91.637730
iter 40 value 89.388684
iter 50 value 89.318274
final value 89.315530
converged
Fitting Repeat 4
# weights: 305
initial value 95.262136
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 111.859265
final value 94.338745
converged
Fitting Repeat 1
# weights: 507
initial value 101.603405
iter 10 value 89.260974
final value 87.951515
converged
Fitting Repeat 2
# weights: 507
initial value 112.523051
iter 10 value 94.311474
final value 94.309524
converged
Fitting Repeat 3
# weights: 507
initial value 102.303851
iter 10 value 88.613642
iter 20 value 86.233655
iter 30 value 85.958078
iter 40 value 85.923637
final value 85.923622
converged
Fitting Repeat 4
# weights: 507
initial value 105.025800
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 105.870025
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 108.413042
iter 10 value 94.448594
iter 20 value 92.171347
iter 30 value 87.780690
iter 40 value 86.791935
iter 50 value 84.691615
iter 60 value 83.773091
iter 70 value 83.757974
iter 80 value 83.756837
iter 90 value 83.755748
final value 83.755628
converged
Fitting Repeat 2
# weights: 103
initial value 96.915095
iter 10 value 94.491115
iter 20 value 93.929879
iter 30 value 88.589796
iter 40 value 86.554901
iter 50 value 84.993865
iter 60 value 83.675493
iter 70 value 83.353918
iter 80 value 83.338581
final value 83.338577
converged
Fitting Repeat 3
# weights: 103
initial value 98.755571
iter 10 value 94.488229
iter 20 value 94.388297
iter 30 value 91.149176
iter 40 value 86.805201
iter 50 value 86.125424
iter 60 value 85.624611
iter 70 value 85.460288
iter 80 value 85.101611
iter 90 value 84.744081
iter 100 value 84.307435
final value 84.307435
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.701923
iter 10 value 94.462758
iter 20 value 90.007064
iter 30 value 88.554770
iter 40 value 87.121224
iter 50 value 86.341278
iter 60 value 83.836192
iter 70 value 83.370479
iter 80 value 83.331163
final value 83.330323
converged
Fitting Repeat 5
# weights: 103
initial value 96.553596
iter 10 value 94.455579
iter 20 value 90.797005
iter 30 value 88.424687
iter 40 value 85.403142
iter 50 value 85.248986
iter 60 value 85.017904
final value 85.002703
converged
Fitting Repeat 1
# weights: 305
initial value 111.675467
iter 10 value 94.834679
iter 20 value 85.705086
iter 30 value 85.518455
iter 40 value 84.119913
iter 50 value 82.177467
iter 60 value 81.560535
iter 70 value 81.199375
iter 80 value 80.962556
iter 90 value 80.931273
iter 100 value 80.882373
final value 80.882373
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.673536
iter 10 value 94.430312
iter 20 value 87.669628
iter 30 value 86.226909
iter 40 value 85.727219
iter 50 value 83.982939
iter 60 value 82.266685
iter 70 value 81.580808
iter 80 value 81.299875
iter 90 value 81.221508
iter 100 value 81.201250
final value 81.201250
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.072382
iter 10 value 94.487578
iter 20 value 94.474880
iter 30 value 92.299219
iter 40 value 85.981440
iter 50 value 84.935204
iter 60 value 84.045937
iter 70 value 83.764025
iter 80 value 83.653199
iter 90 value 83.536468
iter 100 value 83.526519
final value 83.526519
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.842387
iter 10 value 94.573194
iter 20 value 94.290755
iter 30 value 89.761384
iter 40 value 88.700319
iter 50 value 87.056388
iter 60 value 84.373086
iter 70 value 83.337654
iter 80 value 81.951342
iter 90 value 81.429462
iter 100 value 81.184651
final value 81.184651
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.045512
iter 10 value 94.387229
iter 20 value 86.890005
iter 30 value 84.763625
iter 40 value 84.471066
iter 50 value 84.209229
iter 60 value 82.059429
iter 70 value 81.619271
iter 80 value 81.563560
iter 90 value 81.494315
iter 100 value 81.455642
final value 81.455642
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.032549
iter 10 value 95.200942
iter 20 value 94.609194
iter 30 value 87.013185
iter 40 value 85.154305
iter 50 value 84.303938
iter 60 value 84.068640
iter 70 value 83.859580
iter 80 value 83.512136
iter 90 value 82.970930
iter 100 value 82.679352
final value 82.679352
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.697122
iter 10 value 94.223611
iter 20 value 89.745645
iter 30 value 86.660586
iter 40 value 84.648400
iter 50 value 84.420954
iter 60 value 83.820811
iter 70 value 83.530321
iter 80 value 82.953823
iter 90 value 81.833189
iter 100 value 81.252312
final value 81.252312
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.708443
iter 10 value 94.278366
iter 20 value 88.368187
iter 30 value 85.511470
iter 40 value 84.045862
iter 50 value 83.957187
iter 60 value 83.790993
iter 70 value 83.718997
iter 80 value 83.652881
iter 90 value 81.771748
iter 100 value 81.356985
final value 81.356985
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.703844
iter 10 value 91.444663
iter 20 value 84.434175
iter 30 value 83.799125
iter 40 value 83.446974
iter 50 value 83.294794
iter 60 value 83.180638
iter 70 value 83.169014
iter 80 value 82.569783
iter 90 value 81.729343
iter 100 value 81.488953
final value 81.488953
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.002508
iter 10 value 94.467294
iter 20 value 88.616504
iter 30 value 85.810026
iter 40 value 84.167485
iter 50 value 83.877439
iter 60 value 83.514269
iter 70 value 83.159398
iter 80 value 82.399161
iter 90 value 81.531241
iter 100 value 81.366698
final value 81.366698
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.948931
final value 94.485781
converged
Fitting Repeat 2
# weights: 103
initial value 99.421152
iter 10 value 94.485612
final value 94.484526
converged
Fitting Repeat 3
# weights: 103
initial value 95.665652
iter 10 value 94.485842
iter 20 value 94.370076
iter 30 value 91.762387
iter 40 value 91.740079
final value 91.739940
converged
Fitting Repeat 4
# weights: 103
initial value 100.036028
final value 94.485964
converged
Fitting Repeat 5
# weights: 103
initial value 113.058563
final value 94.485888
converged
Fitting Repeat 1
# weights: 305
initial value 102.377639
iter 10 value 94.359343
iter 20 value 94.355056
iter 30 value 94.349421
iter 40 value 92.663838
iter 50 value 89.436538
iter 60 value 89.336445
iter 70 value 85.552870
iter 80 value 84.820157
iter 90 value 82.839425
iter 100 value 80.740444
final value 80.740444
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 96.433322
iter 10 value 94.359166
iter 20 value 93.004660
iter 30 value 92.302869
iter 40 value 92.302206
iter 40 value 92.302206
final value 92.302206
converged
Fitting Repeat 3
# weights: 305
initial value 101.173853
iter 10 value 94.358909
iter 20 value 88.853720
iter 30 value 87.145309
iter 40 value 86.557881
iter 50 value 86.339577
final value 86.338616
converged
Fitting Repeat 4
# weights: 305
initial value 115.025248
iter 10 value 94.488874
iter 20 value 94.484314
iter 30 value 92.438727
final value 92.403731
converged
Fitting Repeat 5
# weights: 305
initial value 107.582490
iter 10 value 94.489429
iter 20 value 94.481479
iter 30 value 94.320079
final value 94.308476
converged
Fitting Repeat 1
# weights: 507
initial value 111.332340
iter 10 value 94.491829
iter 20 value 93.820164
iter 30 value 86.871703
iter 40 value 85.788188
iter 50 value 85.782853
iter 60 value 85.741580
iter 70 value 85.739891
iter 80 value 85.527329
iter 90 value 84.927523
iter 100 value 84.653888
final value 84.653888
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 98.753527
iter 10 value 94.317763
iter 20 value 94.028325
iter 30 value 86.085165
iter 40 value 86.078104
iter 50 value 85.856282
iter 60 value 82.556382
iter 70 value 81.103223
iter 80 value 81.099892
iter 90 value 81.086744
iter 100 value 80.950328
final value 80.950328
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.976118
iter 10 value 88.644384
iter 20 value 87.057566
iter 30 value 86.908345
iter 40 value 86.899740
final value 86.899606
converged
Fitting Repeat 4
# weights: 507
initial value 96.043348
iter 10 value 93.410297
iter 20 value 92.574359
iter 30 value 92.572378
iter 40 value 92.564199
iter 50 value 92.269406
iter 60 value 91.869753
iter 70 value 91.656780
iter 80 value 91.606385
iter 90 value 91.589403
iter 100 value 91.589000
final value 91.589000
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.218009
iter 10 value 89.061042
iter 20 value 87.952295
iter 30 value 87.946819
iter 40 value 87.185906
iter 50 value 85.948578
iter 60 value 85.775298
iter 70 value 83.895691
iter 80 value 83.416253
iter 90 value 83.401962
iter 100 value 83.401578
final value 83.401578
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.538360
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 107.173723
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.747210
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.587284
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 95.199813
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 108.309281
final value 93.671508
converged
Fitting Repeat 2
# weights: 305
initial value 116.409016
iter 10 value 94.052910
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 108.219971
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 98.548633
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 94.945227
final value 94.008696
converged
Fitting Repeat 1
# weights: 507
initial value 122.462622
iter 10 value 92.380146
iter 20 value 88.537769
iter 30 value 87.437567
iter 40 value 87.237576
iter 50 value 87.229480
final value 87.229377
converged
Fitting Repeat 2
# weights: 507
initial value 95.993899
iter 10 value 89.096392
iter 20 value 88.790152
final value 88.789942
converged
Fitting Repeat 3
# weights: 507
initial value 95.181636
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 114.194897
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 96.421222
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 96.571666
iter 10 value 93.961440
iter 20 value 89.634605
iter 30 value 89.337418
iter 40 value 87.543791
iter 50 value 86.521667
iter 60 value 86.217024
iter 70 value 86.099462
iter 80 value 85.946294
iter 90 value 85.899068
iter 100 value 85.857978
final value 85.857978
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 119.395435
iter 10 value 94.041643
iter 20 value 91.573965
iter 30 value 89.383888
iter 40 value 87.843060
iter 50 value 87.262659
iter 60 value 86.126037
iter 70 value 85.865063
iter 80 value 85.575388
iter 90 value 85.451316
final value 85.451271
converged
Fitting Repeat 3
# weights: 103
initial value 96.818401
iter 10 value 93.758183
iter 20 value 89.839419
iter 30 value 88.326691
iter 40 value 88.195774
iter 50 value 87.939408
iter 60 value 87.756597
iter 70 value 87.368928
iter 80 value 87.337322
final value 87.337266
converged
Fitting Repeat 4
# weights: 103
initial value 97.062586
iter 10 value 94.042136
iter 20 value 90.808762
iter 30 value 88.666425
iter 40 value 87.939916
iter 50 value 87.164742
iter 60 value 86.981483
final value 86.978357
converged
Fitting Repeat 5
# weights: 103
initial value 96.266512
iter 10 value 94.056488
iter 20 value 89.494609
iter 30 value 88.622986
iter 40 value 87.533680
iter 50 value 87.374034
iter 60 value 87.352940
final value 87.349203
converged
Fitting Repeat 1
# weights: 305
initial value 108.580861
iter 10 value 94.093799
iter 20 value 94.050977
iter 30 value 93.882783
iter 40 value 92.562220
iter 50 value 92.160199
iter 60 value 90.666923
iter 70 value 86.624712
iter 80 value 85.226022
iter 90 value 85.070075
iter 100 value 84.641435
final value 84.641435
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 109.146714
iter 10 value 94.142140
iter 20 value 89.254958
iter 30 value 88.413204
iter 40 value 87.996649
iter 50 value 87.366354
iter 60 value 86.318468
iter 70 value 86.165407
iter 80 value 85.649432
iter 90 value 84.809388
iter 100 value 84.269340
final value 84.269340
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.294668
iter 10 value 94.090059
iter 20 value 93.980679
iter 30 value 91.356010
iter 40 value 88.637013
iter 50 value 86.338773
iter 60 value 85.716954
iter 70 value 85.118507
iter 80 value 84.880269
iter 90 value 84.734231
iter 100 value 84.665561
final value 84.665561
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.491389
iter 10 value 94.820590
iter 20 value 94.341797
iter 30 value 94.053663
iter 40 value 93.984022
iter 50 value 93.594571
iter 60 value 91.702395
iter 70 value 91.488176
iter 80 value 89.046031
iter 90 value 87.425346
iter 100 value 87.295208
final value 87.295208
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.610195
iter 10 value 94.842513
iter 20 value 91.850596
iter 30 value 87.726517
iter 40 value 85.684861
iter 50 value 84.741043
iter 60 value 84.573806
iter 70 value 84.547402
iter 80 value 84.473197
iter 90 value 84.413229
iter 100 value 84.393030
final value 84.393030
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 138.103421
iter 10 value 93.601647
iter 20 value 89.756662
iter 30 value 88.551709
iter 40 value 86.411126
iter 50 value 84.976586
iter 60 value 84.265132
iter 70 value 84.160540
iter 80 value 84.070272
iter 90 value 84.052730
iter 100 value 84.036677
final value 84.036677
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.696910
iter 10 value 94.249975
iter 20 value 93.936406
iter 30 value 89.707337
iter 40 value 89.069870
iter 50 value 88.314326
iter 60 value 86.179767
iter 70 value 85.885534
iter 80 value 85.800351
iter 90 value 85.679079
iter 100 value 85.238562
final value 85.238562
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 124.345900
iter 10 value 94.224865
iter 20 value 93.753220
iter 30 value 88.082885
iter 40 value 87.153918
iter 50 value 85.963865
iter 60 value 85.166386
iter 70 value 84.749770
iter 80 value 84.445678
iter 90 value 84.118544
iter 100 value 83.834845
final value 83.834845
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.914043
iter 10 value 91.240845
iter 20 value 89.820273
iter 30 value 89.372238
iter 40 value 88.472001
iter 50 value 87.742449
iter 60 value 87.547524
iter 70 value 87.459490
iter 80 value 87.344156
iter 90 value 87.003457
iter 100 value 86.091213
final value 86.091213
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.821006
iter 10 value 95.851166
iter 20 value 92.563215
iter 30 value 89.939838
iter 40 value 88.448476
iter 50 value 86.631528
iter 60 value 85.029782
iter 70 value 84.674005
iter 80 value 84.537644
iter 90 value 84.494676
iter 100 value 84.403542
final value 84.403542
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.040583
final value 94.054783
converged
Fitting Repeat 2
# weights: 103
initial value 98.010100
final value 94.051739
converged
Fitting Repeat 3
# weights: 103
initial value 107.532526
iter 10 value 94.054483
iter 20 value 94.052859
iter 30 value 92.154329
iter 40 value 89.408631
final value 89.408212
converged
Fitting Repeat 4
# weights: 103
initial value 97.956263
iter 10 value 94.054632
iter 20 value 94.052915
iter 30 value 93.855661
final value 93.854833
converged
Fitting Repeat 5
# weights: 103
initial value 94.928454
final value 94.054543
converged
Fitting Repeat 1
# weights: 305
initial value 114.209848
iter 10 value 94.057685
iter 20 value 94.034264
iter 30 value 91.524687
iter 40 value 90.522206
iter 50 value 88.905904
iter 60 value 84.586243
iter 70 value 83.899340
iter 80 value 83.784478
iter 90 value 83.675179
iter 100 value 83.653086
final value 83.653086
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.403841
iter 10 value 94.057826
iter 20 value 94.053095
iter 30 value 94.030999
iter 40 value 88.541528
iter 50 value 88.469809
iter 60 value 88.234119
iter 70 value 86.933967
iter 80 value 86.534637
iter 90 value 86.516922
iter 100 value 86.499765
final value 86.499765
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 94.408698
iter 10 value 94.013696
iter 20 value 94.009302
iter 30 value 94.008690
iter 40 value 89.924854
iter 50 value 88.213188
iter 60 value 88.061009
iter 70 value 85.082222
iter 80 value 84.677694
iter 90 value 84.330096
iter 100 value 84.326978
final value 84.326978
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.839218
iter 10 value 94.057719
iter 20 value 91.726319
iter 30 value 91.286890
iter 40 value 88.675381
iter 50 value 88.509133
final value 88.509116
converged
Fitting Repeat 5
# weights: 305
initial value 99.505207
iter 10 value 94.057704
iter 20 value 93.838854
iter 30 value 89.198859
iter 40 value 88.938320
iter 50 value 88.776588
iter 60 value 88.709173
iter 70 value 88.110796
iter 80 value 86.288804
iter 90 value 86.266618
final value 86.265846
converged
Fitting Repeat 1
# weights: 507
initial value 117.321680
iter 10 value 94.061831
iter 20 value 94.041545
iter 30 value 88.899377
iter 40 value 88.431398
iter 50 value 84.735060
iter 60 value 83.596545
iter 70 value 83.296516
iter 80 value 83.258069
final value 83.257825
converged
Fitting Repeat 2
# weights: 507
initial value 102.785731
iter 10 value 93.751736
iter 20 value 92.995861
iter 30 value 92.988339
iter 40 value 92.479898
iter 50 value 92.341332
iter 60 value 91.896594
iter 70 value 91.881062
final value 91.880477
converged
Fitting Repeat 3
# weights: 507
initial value 106.815986
iter 10 value 94.025622
iter 20 value 94.016400
iter 30 value 90.305552
final value 88.786162
converged
Fitting Repeat 4
# weights: 507
initial value 98.211832
iter 10 value 94.019734
iter 20 value 93.882715
iter 30 value 93.698085
iter 40 value 93.659692
iter 50 value 93.657844
iter 60 value 93.656451
iter 70 value 93.655787
iter 80 value 93.655329
iter 90 value 93.654789
final value 93.654547
converged
Fitting Repeat 5
# weights: 507
initial value 121.938588
iter 10 value 94.053503
iter 20 value 93.115546
iter 30 value 93.108011
iter 40 value 93.106334
iter 50 value 93.098333
iter 60 value 93.070786
iter 70 value 87.131771
iter 80 value 86.097482
iter 90 value 85.154842
iter 100 value 85.121897
final value 85.121897
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 107.219584
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.288394
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 101.276295
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.911879
final value 93.836066
converged
Fitting Repeat 5
# weights: 103
initial value 100.701557
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 96.062342
iter 10 value 91.875332
iter 20 value 91.533496
iter 30 value 91.503719
final value 91.503677
converged
Fitting Repeat 2
# weights: 305
initial value 114.852916
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 104.343440
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 97.601745
iter 10 value 92.933409
iter 20 value 92.933335
final value 92.933333
converged
Fitting Repeat 5
# weights: 305
initial value 94.780752
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 107.524894
final value 93.836066
converged
Fitting Repeat 2
# weights: 507
initial value 100.564567
iter 10 value 93.911535
iter 20 value 93.036404
iter 30 value 92.932160
final value 92.925654
converged
Fitting Repeat 3
# weights: 507
initial value 104.805346
final value 93.836066
converged
Fitting Repeat 4
# weights: 507
initial value 105.003005
iter 10 value 92.296643
iter 20 value 91.854452
final value 91.854325
converged
Fitting Repeat 5
# weights: 507
initial value 104.966921
iter 10 value 93.183861
iter 10 value 93.183861
iter 10 value 93.183861
final value 93.183861
converged
Fitting Repeat 1
# weights: 103
initial value 107.884666
iter 10 value 93.235765
iter 20 value 92.244398
iter 30 value 92.195654
iter 40 value 92.159337
iter 50 value 90.163826
iter 60 value 83.969864
iter 70 value 83.335458
iter 80 value 82.825792
iter 90 value 82.799080
final value 82.799078
converged
Fitting Repeat 2
# weights: 103
initial value 102.226726
iter 10 value 94.076823
iter 20 value 93.972232
iter 30 value 87.986267
iter 40 value 83.747808
iter 50 value 83.370860
iter 60 value 82.493667
iter 70 value 82.433561
final value 82.433523
converged
Fitting Repeat 3
# weights: 103
initial value 96.676161
iter 10 value 92.592711
iter 20 value 83.618621
iter 30 value 81.785820
iter 40 value 80.169977
iter 50 value 80.007228
iter 60 value 79.843511
iter 70 value 79.758190
final value 79.757791
converged
Fitting Repeat 4
# weights: 103
initial value 96.172200
iter 10 value 94.075157
iter 20 value 94.048471
iter 30 value 93.433904
iter 40 value 90.165148
iter 50 value 89.376802
iter 60 value 83.956437
iter 70 value 83.036653
iter 80 value 82.182566
iter 90 value 81.998204
final value 81.979454
converged
Fitting Repeat 5
# weights: 103
initial value 101.958460
iter 10 value 92.828267
iter 20 value 83.932920
iter 30 value 82.385495
iter 40 value 80.911298
iter 50 value 79.916720
iter 60 value 79.503529
final value 79.442136
converged
Fitting Repeat 1
# weights: 305
initial value 117.529575
iter 10 value 94.039966
iter 20 value 92.299640
iter 30 value 92.184072
iter 40 value 92.081499
iter 50 value 83.917105
iter 60 value 82.741954
iter 70 value 82.552670
iter 80 value 82.171377
iter 90 value 80.903100
iter 100 value 79.758536
final value 79.758536
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.549012
iter 10 value 92.038855
iter 20 value 89.191070
iter 30 value 84.323487
iter 40 value 82.843341
iter 50 value 81.382626
iter 60 value 80.891696
iter 70 value 80.810018
iter 80 value 80.094020
iter 90 value 78.902189
iter 100 value 78.503885
final value 78.503885
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.269738
iter 10 value 91.085126
iter 20 value 85.048411
iter 30 value 82.914082
iter 40 value 82.250132
iter 50 value 82.085621
iter 60 value 81.906266
iter 70 value 81.596290
iter 80 value 80.618009
iter 90 value 79.804403
iter 100 value 78.977747
final value 78.977747
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.996227
iter 10 value 93.983951
iter 20 value 92.190942
iter 30 value 85.830068
iter 40 value 82.655279
iter 50 value 79.809820
iter 60 value 79.004052
iter 70 value 78.375201
iter 80 value 78.041117
iter 90 value 77.999456
iter 100 value 77.949138
final value 77.949138
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.997483
iter 10 value 95.530660
iter 20 value 93.534524
iter 30 value 92.340361
iter 40 value 92.008260
iter 50 value 84.416426
iter 60 value 82.634051
iter 70 value 80.112686
iter 80 value 78.458825
iter 90 value 78.129015
iter 100 value 77.929605
final value 77.929605
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 128.970695
iter 10 value 92.511301
iter 20 value 84.543661
iter 30 value 81.351981
iter 40 value 80.367741
iter 50 value 79.828499
iter 60 value 79.146290
iter 70 value 78.756708
iter 80 value 78.396149
iter 90 value 78.056915
iter 100 value 77.941447
final value 77.941447
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.067437
iter 10 value 93.926005
iter 20 value 92.552814
iter 30 value 81.587080
iter 40 value 79.507194
iter 50 value 78.415292
iter 60 value 78.282393
iter 70 value 78.062689
iter 80 value 77.969142
iter 90 value 77.854268
iter 100 value 77.696641
final value 77.696641
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.314464
iter 10 value 93.862841
iter 20 value 90.188820
iter 30 value 89.781397
iter 40 value 88.442942
iter 50 value 86.067466
iter 60 value 82.975851
iter 70 value 81.948066
iter 80 value 81.426739
iter 90 value 79.505674
iter 100 value 78.638398
final value 78.638398
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.377979
iter 10 value 93.944887
iter 20 value 84.092249
iter 30 value 83.217190
iter 40 value 82.154347
iter 50 value 80.148562
iter 60 value 79.467819
iter 70 value 79.156811
iter 80 value 79.082245
iter 90 value 78.919790
iter 100 value 78.828520
final value 78.828520
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.925463
iter 10 value 93.394259
iter 20 value 87.829895
iter 30 value 85.296133
iter 40 value 85.073969
iter 50 value 82.647896
iter 60 value 80.969431
iter 70 value 80.595897
iter 80 value 80.272004
iter 90 value 80.180366
iter 100 value 79.562006
final value 79.562006
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.045574
final value 94.054443
converged
Fitting Repeat 2
# weights: 103
initial value 95.200157
iter 10 value 93.838049
iter 20 value 93.519643
iter 30 value 92.083730
iter 40 value 86.581197
iter 50 value 80.997241
iter 60 value 79.079247
iter 70 value 79.038471
iter 80 value 79.034777
iter 90 value 79.034563
iter 100 value 79.032813
final value 79.032813
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.612424
final value 94.054496
converged
Fitting Repeat 4
# weights: 103
initial value 96.126921
iter 10 value 90.811881
iter 20 value 84.072830
iter 30 value 82.123667
iter 40 value 82.004149
iter 50 value 81.289204
iter 60 value 81.266546
iter 70 value 81.239162
iter 80 value 81.180999
iter 90 value 81.167644
final value 81.167294
converged
Fitting Repeat 5
# weights: 103
initial value 94.978866
final value 94.054572
converged
Fitting Repeat 1
# weights: 305
initial value 94.302637
iter 10 value 90.564065
iter 20 value 84.390775
iter 30 value 81.280738
iter 40 value 81.271819
iter 50 value 81.265509
final value 81.265191
converged
Fitting Repeat 2
# weights: 305
initial value 101.531106
iter 10 value 93.841390
iter 20 value 93.341431
iter 30 value 92.069031
final value 91.974667
converged
Fitting Repeat 3
# weights: 305
initial value 109.299193
iter 10 value 94.057805
final value 94.053159
converged
Fitting Repeat 4
# weights: 305
initial value 94.386701
iter 10 value 91.826343
iter 20 value 91.573999
iter 30 value 91.515921
iter 40 value 91.515300
final value 91.510794
converged
Fitting Repeat 5
# weights: 305
initial value 115.093940
iter 10 value 94.057619
iter 20 value 93.188107
iter 30 value 91.973716
final value 91.973688
converged
Fitting Repeat 1
# weights: 507
initial value 110.582986
iter 10 value 90.801955
iter 20 value 89.068552
iter 30 value 89.061505
iter 40 value 86.177790
iter 50 value 85.593222
iter 60 value 85.071976
iter 70 value 85.058869
final value 85.058836
converged
Fitting Repeat 2
# weights: 507
initial value 97.670230
iter 10 value 93.844096
iter 20 value 93.782865
iter 30 value 92.453291
iter 40 value 91.352829
iter 50 value 89.731476
iter 60 value 83.412664
iter 70 value 83.360596
iter 80 value 83.360309
iter 90 value 81.397829
final value 81.314169
converged
Fitting Repeat 3
# weights: 507
initial value 101.914138
iter 10 value 92.247472
iter 20 value 90.278103
iter 30 value 90.036968
iter 40 value 90.034369
iter 50 value 87.620468
iter 60 value 87.342786
iter 70 value 87.035714
final value 87.034772
converged
Fitting Repeat 4
# weights: 507
initial value 104.672614
iter 10 value 93.551230
iter 20 value 92.986777
iter 30 value 81.042735
iter 40 value 78.179858
iter 50 value 77.854808
final value 77.853689
converged
Fitting Repeat 5
# weights: 507
initial value 102.438752
iter 10 value 91.979500
iter 20 value 91.957018
iter 30 value 91.366385
iter 40 value 89.265581
iter 50 value 86.482887
iter 60 value 85.957268
iter 70 value 85.936616
iter 80 value 85.705254
iter 90 value 85.245234
iter 100 value 85.237275
final value 85.237275
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 120.632118
iter 10 value 117.605849
iter 20 value 117.592500
iter 30 value 117.542193
iter 40 value 117.504305
iter 50 value 117.503374
iter 60 value 117.501296
iter 70 value 117.499616
iter 80 value 116.149890
iter 90 value 109.495216
iter 100 value 109.491394
final value 109.491394
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 134.507946
iter 10 value 117.899343
iter 20 value 117.891607
iter 30 value 111.376850
iter 40 value 110.595468
iter 50 value 109.128730
iter 60 value 106.926316
iter 70 value 106.924861
iter 80 value 106.922897
iter 90 value 106.883997
iter 100 value 106.878011
final value 106.878011
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 132.975824
iter 10 value 117.768445
iter 20 value 117.761875
iter 30 value 117.760466
iter 40 value 117.695251
iter 50 value 108.303924
iter 60 value 108.259723
iter 70 value 108.256190
iter 80 value 105.590819
iter 90 value 105.300776
final value 105.300116
converged
Fitting Repeat 4
# weights: 507
initial value 125.887870
iter 10 value 117.898119
iter 20 value 117.893955
iter 30 value 116.259071
iter 40 value 115.230335
iter 50 value 115.227763
iter 60 value 115.225101
iter 70 value 115.223747
iter 80 value 115.222863
iter 90 value 115.221283
iter 100 value 115.028290
final value 115.028290
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 130.587625
iter 10 value 117.766891
iter 20 value 117.539400
iter 30 value 117.511467
final value 117.511441
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Thu Mar 12 00:22:59 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.249 0.875 93.487
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 32.654 | 0.630 | 33.288 | |
| FreqInteractors | 0.424 | 0.030 | 0.453 | |
| calculateAAC | 0.029 | 0.002 | 0.032 | |
| calculateAutocor | 0.270 | 0.021 | 0.291 | |
| calculateCTDC | 0.071 | 0.001 | 0.072 | |
| calculateCTDD | 0.460 | 0.002 | 0.462 | |
| calculateCTDT | 0.141 | 0.001 | 0.142 | |
| calculateCTriad | 0.403 | 0.010 | 0.414 | |
| calculateDC | 0.085 | 0.006 | 0.092 | |
| calculateF | 0.304 | 0.001 | 0.306 | |
| calculateKSAAP | 0.101 | 0.007 | 0.108 | |
| calculateQD_Sm | 1.890 | 0.024 | 1.915 | |
| calculateTC | 1.440 | 0.145 | 1.586 | |
| calculateTC_Sm | 0.275 | 0.004 | 0.280 | |
| corr_plot | 33.732 | 0.319 | 34.052 | |
| enrichfindP | 0.562 | 0.050 | 12.569 | |
| enrichfind_hp | 0.045 | 0.004 | 1.995 | |
| enrichplot | 0.473 | 0.001 | 0.474 | |
| filter_missing_values | 0.000 | 0.001 | 0.001 | |
| getFASTA | 0.39 | 0.01 | 4.26 | |
| getHPI | 0.001 | 0.001 | 0.002 | |
| get_negativePPI | 0.002 | 0.002 | 0.004 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.003 | 0.000 | 0.004 | |
| plotPPI | 0.097 | 0.004 | 0.101 | |
| pred_ensembel | 12.567 | 0.111 | 11.373 | |
| var_imp | 33.240 | 0.473 | 33.715 | |