| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-17 11:34 -0400 (Tue, 17 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4845 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4060 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1012/2367 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.17.2 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.17.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz |
| StartedAt: 2026-03-17 00:21:16 -0400 (Tue, 17 Mar 2026) |
| EndedAt: 2026-03-17 00:36:29 -0400 (Tue, 17 Mar 2026) |
| EllapsedTime: 913.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings HPiP_1.17.2.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2026-03-05 r89546)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-03-17 04:21:16 UTC
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.17.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 35.544 0.639 37.145
corr_plot 35.528 0.409 35.986
FSmethod 33.479 0.569 34.050
pred_ensembel 13.089 0.301 12.092
enrichfindP 0.617 0.041 13.642
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.23-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.17.2’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 101.910905
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 105.776429
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.706371
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.789532
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.965215
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 94.754563
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 96.603254
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 97.549517
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 95.602786
iter 10 value 93.722231
final value 93.722222
converged
Fitting Repeat 5
# weights: 305
initial value 100.144603
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 104.120654
iter 10 value 94.008696
iter 10 value 94.008696
iter 10 value 94.008696
final value 94.008696
converged
Fitting Repeat 2
# weights: 507
initial value 108.447249
final value 94.008696
converged
Fitting Repeat 3
# weights: 507
initial value 118.608490
iter 10 value 93.637236
final value 93.636784
converged
Fitting Repeat 4
# weights: 507
initial value 111.789565
final value 94.008696
converged
Fitting Repeat 5
# weights: 507
initial value 108.489700
final value 94.008696
converged
Fitting Repeat 1
# weights: 103
initial value 100.825433
iter 10 value 87.512374
iter 20 value 83.865688
iter 30 value 81.741432
iter 40 value 80.035874
iter 50 value 79.149465
iter 60 value 78.758088
iter 70 value 78.611342
iter 80 value 78.584538
final value 78.584536
converged
Fitting Repeat 2
# weights: 103
initial value 101.398325
iter 10 value 94.080825
iter 20 value 94.052136
iter 30 value 94.024451
iter 40 value 93.696308
iter 50 value 83.708023
iter 60 value 82.986840
iter 70 value 82.776067
iter 80 value 82.632345
iter 90 value 82.606259
iter 100 value 82.600001
final value 82.600001
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.368947
iter 10 value 94.079514
iter 20 value 93.887961
iter 30 value 84.551732
iter 40 value 83.014557
iter 50 value 82.812339
iter 60 value 82.655407
iter 70 value 82.606842
final value 82.600000
converged
Fitting Repeat 4
# weights: 103
initial value 101.618017
iter 10 value 91.682379
iter 20 value 81.736416
iter 30 value 79.985812
iter 40 value 79.372511
iter 50 value 79.124636
iter 60 value 79.075268
iter 70 value 79.034217
iter 80 value 78.787793
iter 90 value 78.592145
final value 78.584536
converged
Fitting Repeat 5
# weights: 103
initial value 96.124505
iter 10 value 94.062382
iter 20 value 90.014780
iter 30 value 88.021551
iter 40 value 85.595553
iter 50 value 85.361660
iter 60 value 82.691326
iter 70 value 82.602047
final value 82.600000
converged
Fitting Repeat 1
# weights: 305
initial value 112.531055
iter 10 value 88.549643
iter 20 value 87.066104
iter 30 value 85.779521
iter 40 value 84.134748
iter 50 value 82.389389
iter 60 value 82.057670
iter 70 value 79.883480
iter 80 value 78.877519
iter 90 value 78.415677
iter 100 value 78.179760
final value 78.179760
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 122.196190
iter 10 value 93.372505
iter 20 value 88.133888
iter 30 value 84.873858
iter 40 value 84.031966
iter 50 value 83.727706
iter 60 value 83.393134
iter 70 value 81.207699
iter 80 value 79.413850
iter 90 value 79.120141
iter 100 value 79.047376
final value 79.047376
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.773323
iter 10 value 94.045470
iter 20 value 91.613212
iter 30 value 84.778036
iter 40 value 81.778982
iter 50 value 79.377224
iter 60 value 78.545124
iter 70 value 77.872509
iter 80 value 77.345605
iter 90 value 77.334304
iter 100 value 77.282498
final value 77.282498
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.275780
iter 10 value 94.017980
iter 20 value 90.743539
iter 30 value 86.589279
iter 40 value 83.982682
iter 50 value 80.738795
iter 60 value 79.485527
iter 70 value 78.829976
iter 80 value 78.613542
iter 90 value 78.574114
iter 100 value 78.546479
final value 78.546479
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.671269
iter 10 value 94.057230
iter 20 value 94.029870
iter 30 value 93.671621
iter 40 value 93.612717
iter 50 value 87.198407
iter 60 value 80.869548
iter 70 value 79.283354
iter 80 value 78.449293
iter 90 value 78.217168
iter 100 value 77.775666
final value 77.775666
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 105.769181
iter 10 value 97.981059
iter 20 value 93.800167
iter 30 value 87.372194
iter 40 value 86.068557
iter 50 value 85.373691
iter 60 value 83.701685
iter 70 value 82.835047
iter 80 value 80.598419
iter 90 value 79.953813
iter 100 value 79.346439
final value 79.346439
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 121.063680
iter 10 value 95.784775
iter 20 value 94.554416
iter 30 value 89.368450
iter 40 value 83.032435
iter 50 value 80.746474
iter 60 value 79.223103
iter 70 value 78.983669
iter 80 value 78.386471
iter 90 value 77.903624
iter 100 value 77.705008
final value 77.705008
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 136.488418
iter 10 value 94.092430
iter 20 value 88.296090
iter 30 value 83.438886
iter 40 value 79.672040
iter 50 value 78.734793
iter 60 value 77.156931
iter 70 value 77.057775
iter 80 value 76.958150
iter 90 value 76.904128
iter 100 value 76.850604
final value 76.850604
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 126.160684
iter 10 value 93.922079
iter 20 value 85.768093
iter 30 value 83.669343
iter 40 value 81.725876
iter 50 value 80.853377
iter 60 value 79.301950
iter 70 value 78.634734
iter 80 value 78.516275
iter 90 value 77.950300
iter 100 value 77.702878
final value 77.702878
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.154178
iter 10 value 91.701560
iter 20 value 83.614303
iter 30 value 83.183905
iter 40 value 81.723993
iter 50 value 80.097984
iter 60 value 79.016491
iter 70 value 78.359666
iter 80 value 77.207840
iter 90 value 76.817786
iter 100 value 76.565707
final value 76.565707
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.101528
final value 94.054640
converged
Fitting Repeat 2
# weights: 103
initial value 99.151539
iter 10 value 94.054488
final value 94.052914
converged
Fitting Repeat 3
# weights: 103
initial value 94.574541
final value 94.054795
converged
Fitting Repeat 4
# weights: 103
initial value 96.595297
iter 10 value 94.054566
iter 20 value 94.025347
final value 93.603716
converged
Fitting Repeat 5
# weights: 103
initial value 95.304342
final value 94.054772
converged
Fitting Repeat 1
# weights: 305
initial value 97.845639
iter 10 value 92.325355
iter 20 value 86.901586
iter 30 value 84.830672
iter 40 value 83.733961
iter 50 value 83.694872
iter 60 value 83.694188
iter 70 value 82.976894
final value 82.963837
converged
Fitting Repeat 2
# weights: 305
initial value 107.370530
iter 10 value 93.695405
iter 20 value 93.687792
iter 30 value 93.602204
iter 40 value 93.554231
iter 50 value 92.957052
iter 60 value 79.994752
iter 70 value 79.553255
final value 79.552379
converged
Fitting Repeat 3
# weights: 305
initial value 110.046900
iter 10 value 94.013346
iter 20 value 94.011728
iter 30 value 94.009025
final value 94.008763
converged
Fitting Repeat 4
# weights: 305
initial value 108.539395
iter 10 value 94.057034
iter 20 value 93.622171
final value 93.602408
converged
Fitting Repeat 5
# weights: 305
initial value 94.543022
iter 10 value 93.317051
iter 20 value 93.232195
iter 30 value 93.219792
iter 40 value 92.400321
iter 50 value 92.372599
final value 92.372566
converged
Fitting Repeat 1
# weights: 507
initial value 97.716521
iter 10 value 94.017393
iter 20 value 93.353877
iter 30 value 86.258673
iter 40 value 86.171685
iter 50 value 86.167357
iter 60 value 86.166786
iter 70 value 84.079834
iter 80 value 84.077230
iter 90 value 83.989068
iter 100 value 83.988487
final value 83.988487
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 97.231340
iter 10 value 93.679729
iter 20 value 89.973060
iter 30 value 83.706499
iter 40 value 81.578781
iter 50 value 80.450528
iter 60 value 80.395454
iter 70 value 78.691068
iter 80 value 78.239653
iter 90 value 78.121826
iter 100 value 78.120651
final value 78.120651
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.351808
iter 10 value 94.060775
iter 20 value 94.006058
iter 30 value 86.636606
iter 40 value 85.209564
final value 85.170761
converged
Fitting Repeat 4
# weights: 507
initial value 94.444766
iter 10 value 93.868176
iter 20 value 93.853436
iter 30 value 84.092922
iter 40 value 83.967178
iter 50 value 81.038135
iter 60 value 80.994035
iter 70 value 80.964707
iter 80 value 80.701635
iter 90 value 80.667509
iter 100 value 80.581309
final value 80.581309
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.307822
iter 10 value 94.060750
iter 20 value 93.330984
iter 30 value 86.086070
iter 40 value 84.239372
iter 50 value 79.462643
iter 60 value 79.428029
iter 70 value 79.427492
iter 80 value 79.426150
iter 90 value 78.248992
iter 100 value 77.422979
final value 77.422979
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 122.917304
iter 10 value 94.275928
final value 94.275362
converged
Fitting Repeat 2
# weights: 103
initial value 94.739432
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.825005
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.564236
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.441866
final value 94.275362
converged
Fitting Repeat 1
# weights: 305
initial value 109.141351
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 105.692083
final value 94.046703
converged
Fitting Repeat 3
# weights: 305
initial value 106.583045
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.317676
final value 94.479532
converged
Fitting Repeat 5
# weights: 305
initial value 98.791526
final value 94.275362
converged
Fitting Repeat 1
# weights: 507
initial value 102.932623
final value 94.484210
converged
Fitting Repeat 2
# weights: 507
initial value 107.527187
iter 10 value 94.276578
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 108.045533
iter 10 value 89.561029
iter 20 value 88.302854
iter 30 value 87.114006
iter 40 value 86.177032
iter 50 value 86.162144
iter 60 value 86.161341
final value 86.161325
converged
Fitting Repeat 4
# weights: 507
initial value 96.879493
iter 10 value 92.900642
iter 20 value 89.663132
iter 30 value 89.344735
iter 40 value 89.307023
iter 50 value 88.930048
final value 88.431853
converged
Fitting Repeat 5
# weights: 507
initial value 96.654931
iter 10 value 88.928077
iter 20 value 85.251157
final value 85.249226
converged
Fitting Repeat 1
# weights: 103
initial value 103.588153
iter 10 value 94.548902
iter 20 value 93.844555
iter 30 value 87.576477
iter 40 value 86.764880
iter 50 value 84.679030
iter 60 value 84.651523
iter 70 value 81.923198
iter 80 value 81.670294
final value 81.657223
converged
Fitting Repeat 2
# weights: 103
initial value 101.403697
iter 10 value 94.525695
iter 20 value 94.480836
iter 30 value 94.345896
iter 40 value 94.331794
iter 50 value 87.837833
iter 60 value 86.262929
iter 70 value 84.100735
iter 80 value 82.987317
iter 90 value 82.352770
iter 100 value 81.667913
final value 81.667913
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.024859
iter 10 value 94.554696
iter 20 value 86.169597
iter 30 value 85.265408
iter 40 value 84.746606
iter 50 value 84.172503
iter 60 value 83.977411
iter 70 value 81.307967
iter 80 value 81.203126
final value 81.203082
converged
Fitting Repeat 4
# weights: 103
initial value 100.235664
iter 10 value 94.482434
iter 20 value 94.017630
iter 30 value 89.865302
iter 40 value 84.908777
iter 50 value 84.719970
final value 84.719954
converged
Fitting Repeat 5
# weights: 103
initial value 108.317182
iter 10 value 94.496563
iter 20 value 89.274365
iter 30 value 83.617588
iter 40 value 82.722084
iter 50 value 81.763401
iter 60 value 81.657326
final value 81.657223
converged
Fitting Repeat 1
# weights: 305
initial value 119.464593
iter 10 value 94.436561
iter 20 value 85.131495
iter 30 value 83.169242
iter 40 value 82.786356
iter 50 value 82.455265
iter 60 value 80.483067
iter 70 value 79.562204
iter 80 value 78.990785
iter 90 value 78.821327
iter 100 value 78.640891
final value 78.640891
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.623377
iter 10 value 94.398828
iter 20 value 86.882292
iter 30 value 83.382909
iter 40 value 83.196232
iter 50 value 82.656672
iter 60 value 82.190883
iter 70 value 79.837314
iter 80 value 79.320645
iter 90 value 79.064400
iter 100 value 78.881475
final value 78.881475
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.087457
iter 10 value 94.459386
iter 20 value 90.383580
iter 30 value 87.028951
iter 40 value 82.384228
iter 50 value 80.300831
iter 60 value 79.009898
iter 70 value 78.535223
iter 80 value 78.359255
iter 90 value 78.332835
iter 100 value 78.287306
final value 78.287306
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.797229
iter 10 value 95.045117
iter 20 value 93.807618
iter 30 value 88.491844
iter 40 value 85.862146
iter 50 value 85.179104
iter 60 value 82.386995
iter 70 value 81.911794
iter 80 value 81.283760
iter 90 value 80.237396
iter 100 value 80.099990
final value 80.099990
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.997627
iter 10 value 93.962042
iter 20 value 92.309026
iter 30 value 84.931130
iter 40 value 82.634117
iter 50 value 82.317797
iter 60 value 81.445603
iter 70 value 81.144307
iter 80 value 80.646674
iter 90 value 79.922361
iter 100 value 79.686277
final value 79.686277
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.321389
iter 10 value 97.083326
iter 20 value 94.716189
iter 30 value 93.205822
iter 40 value 91.376054
iter 50 value 81.488894
iter 60 value 80.582319
iter 70 value 79.663473
iter 80 value 79.444574
iter 90 value 79.308441
iter 100 value 79.135182
final value 79.135182
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.514174
iter 10 value 93.372434
iter 20 value 85.114129
iter 30 value 83.971977
iter 40 value 80.801743
iter 50 value 80.146902
iter 60 value 80.003401
iter 70 value 79.813546
iter 80 value 79.741270
iter 90 value 79.680656
iter 100 value 79.551948
final value 79.551948
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.884476
iter 10 value 94.415921
iter 20 value 85.636798
iter 30 value 82.841419
iter 40 value 81.578317
iter 50 value 78.747214
iter 60 value 78.513642
iter 70 value 78.429369
iter 80 value 78.385301
iter 90 value 78.319955
iter 100 value 78.172287
final value 78.172287
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.913106
iter 10 value 94.457322
iter 20 value 93.331519
iter 30 value 83.688473
iter 40 value 81.984891
iter 50 value 81.434671
iter 60 value 80.893289
iter 70 value 80.737606
iter 80 value 80.395365
iter 90 value 79.869022
iter 100 value 79.448529
final value 79.448529
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.073623
iter 10 value 94.741605
iter 20 value 87.088405
iter 30 value 84.324946
iter 40 value 81.871051
iter 50 value 81.308793
iter 60 value 80.811741
iter 70 value 79.991068
iter 80 value 79.609298
iter 90 value 79.058335
iter 100 value 78.672879
final value 78.672879
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.755703
final value 94.485978
converged
Fitting Repeat 2
# weights: 103
initial value 97.025455
iter 10 value 87.977622
iter 20 value 84.215818
iter 30 value 84.158499
iter 40 value 84.155448
iter 50 value 83.163994
iter 60 value 83.048913
iter 70 value 83.048276
final value 83.048134
converged
Fitting Repeat 3
# weights: 103
initial value 94.724287
iter 10 value 90.622828
iter 20 value 87.098556
iter 30 value 86.670871
iter 40 value 86.596754
iter 50 value 86.593975
final value 86.593674
converged
Fitting Repeat 4
# weights: 103
initial value 108.291837
final value 94.485861
converged
Fitting Repeat 5
# weights: 103
initial value 94.690199
iter 10 value 93.901058
iter 20 value 93.891000
iter 30 value 93.889579
final value 93.889069
converged
Fitting Repeat 1
# weights: 305
initial value 108.219279
iter 10 value 94.490941
iter 20 value 94.476189
iter 30 value 83.583391
iter 40 value 83.375758
iter 50 value 83.304565
iter 60 value 83.271802
iter 70 value 83.266613
iter 80 value 83.067510
iter 90 value 82.931730
iter 100 value 82.929963
final value 82.929963
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 97.192003
iter 10 value 94.489326
final value 94.484833
converged
Fitting Repeat 3
# weights: 305
initial value 95.108954
iter 10 value 94.487908
iter 20 value 89.117015
iter 30 value 83.892111
iter 40 value 83.648276
iter 50 value 83.470892
iter 60 value 83.138838
iter 70 value 78.758130
iter 80 value 77.993202
iter 90 value 77.448813
iter 100 value 77.363096
final value 77.363096
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.053852
iter 10 value 94.489200
iter 20 value 94.308806
iter 30 value 94.275881
iter 40 value 94.275643
iter 50 value 94.204677
iter 60 value 86.771537
iter 70 value 84.280070
iter 80 value 83.573170
iter 90 value 82.385575
iter 100 value 82.349857
final value 82.349857
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.274715
iter 10 value 94.488940
iter 20 value 94.484037
iter 30 value 93.704327
iter 40 value 85.709270
iter 50 value 83.983833
final value 83.981620
converged
Fitting Repeat 1
# weights: 507
initial value 106.153938
iter 10 value 92.913581
iter 20 value 92.428404
iter 30 value 92.308774
iter 40 value 91.869905
iter 50 value 91.868180
iter 60 value 91.865427
iter 70 value 91.863884
iter 80 value 90.518538
iter 90 value 88.651336
iter 100 value 81.439249
final value 81.439249
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.486087
iter 10 value 94.491872
iter 20 value 94.467888
iter 30 value 87.296009
iter 40 value 82.767951
iter 50 value 82.020661
iter 60 value 82.020260
iter 70 value 81.491466
iter 80 value 80.938881
iter 90 value 80.847535
iter 100 value 80.846781
final value 80.846781
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 96.939560
iter 10 value 94.283709
iter 20 value 94.276052
iter 30 value 94.163561
iter 40 value 85.920151
iter 50 value 85.326776
iter 60 value 84.126343
iter 70 value 79.896119
iter 80 value 78.578855
iter 90 value 78.495545
iter 100 value 78.125582
final value 78.125582
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.423425
iter 10 value 94.492596
iter 20 value 94.483590
iter 30 value 84.517411
iter 40 value 84.148214
iter 50 value 80.249287
iter 60 value 79.225141
iter 70 value 79.144584
iter 80 value 79.125162
iter 90 value 78.948218
iter 100 value 77.737711
final value 77.737711
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.133914
iter 10 value 94.297595
iter 20 value 94.288666
iter 30 value 93.884764
iter 40 value 84.889771
iter 50 value 81.352338
iter 60 value 78.128367
iter 70 value 77.728970
iter 80 value 77.456119
iter 90 value 77.451405
iter 100 value 77.443415
final value 77.443415
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 109.285037
final value 93.836066
converged
Fitting Repeat 2
# weights: 103
initial value 94.687740
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.743387
final value 93.836066
converged
Fitting Repeat 4
# weights: 103
initial value 99.023968
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.048118
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.476170
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 104.720161
final value 93.836066
converged
Fitting Repeat 3
# weights: 305
initial value 99.143944
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 94.246370
iter 10 value 90.643623
iter 20 value 87.201793
iter 30 value 86.804659
final value 86.804245
converged
Fitting Repeat 5
# weights: 305
initial value 97.214153
final value 93.288889
converged
Fitting Repeat 1
# weights: 507
initial value 99.839982
iter 10 value 93.576020
iter 20 value 93.327669
iter 30 value 93.326350
iter 30 value 93.326350
iter 30 value 93.326350
final value 93.326350
converged
Fitting Repeat 2
# weights: 507
initial value 105.562748
iter 10 value 93.604826
final value 93.604520
converged
Fitting Repeat 3
# weights: 507
initial value 99.924440
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 98.029598
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 107.034308
iter 10 value 89.897848
iter 20 value 88.480172
final value 88.469069
converged
Fitting Repeat 1
# weights: 103
initial value 97.704764
iter 10 value 94.034610
iter 20 value 93.352318
iter 30 value 86.111489
iter 40 value 85.625880
iter 50 value 85.459995
iter 60 value 85.230338
iter 70 value 84.947648
iter 80 value 84.674617
iter 90 value 84.637256
iter 100 value 84.597361
final value 84.597361
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.431535
iter 10 value 94.089704
iter 20 value 93.416316
iter 30 value 93.378943
iter 40 value 91.224371
iter 50 value 89.688821
iter 60 value 89.153428
iter 70 value 88.093107
iter 80 value 87.573861
iter 90 value 87.467673
iter 100 value 87.463943
final value 87.463943
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.839166
iter 10 value 94.045471
iter 20 value 93.444056
iter 30 value 93.389437
iter 40 value 93.375609
iter 50 value 88.207463
iter 60 value 87.595790
iter 70 value 86.198688
iter 80 value 85.941571
iter 90 value 85.818243
iter 100 value 85.600051
final value 85.600051
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 100.840770
iter 10 value 94.056816
iter 20 value 93.898469
iter 30 value 93.543769
iter 40 value 93.469742
iter 50 value 93.468592
iter 60 value 93.467659
iter 70 value 93.270371
iter 80 value 88.446870
iter 90 value 88.021377
iter 100 value 87.763724
final value 87.763724
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 107.220045
iter 10 value 94.496119
iter 20 value 94.042705
iter 30 value 86.264629
iter 40 value 85.987567
iter 50 value 85.655519
iter 60 value 85.215324
iter 70 value 84.717353
iter 80 value 84.571412
iter 90 value 84.543111
final value 84.535392
converged
Fitting Repeat 1
# weights: 305
initial value 103.966042
iter 10 value 93.145099
iter 20 value 88.287316
iter 30 value 87.609590
iter 40 value 86.597037
iter 50 value 86.347815
iter 60 value 85.991180
iter 70 value 85.480453
iter 80 value 84.872982
iter 90 value 84.059168
iter 100 value 83.809619
final value 83.809619
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.855730
iter 10 value 93.917375
iter 20 value 92.456100
iter 30 value 92.176165
iter 40 value 91.774610
iter 50 value 88.962179
iter 60 value 87.617569
iter 70 value 87.398107
iter 80 value 86.436843
iter 90 value 85.953543
iter 100 value 85.781577
final value 85.781577
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.110904
iter 10 value 93.708063
iter 20 value 90.044374
iter 30 value 87.740571
iter 40 value 86.857386
iter 50 value 86.673848
iter 60 value 86.563607
iter 70 value 85.988065
iter 80 value 84.930454
iter 90 value 83.992505
iter 100 value 83.628320
final value 83.628320
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 98.995836
iter 10 value 93.832810
iter 20 value 89.242495
iter 30 value 87.132706
iter 40 value 87.027339
iter 50 value 86.847613
iter 60 value 86.696130
iter 70 value 85.728468
iter 80 value 84.727497
iter 90 value 84.051716
iter 100 value 83.911736
final value 83.911736
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.354978
iter 10 value 93.505923
iter 20 value 93.166313
iter 30 value 92.113197
iter 40 value 88.566912
iter 50 value 87.531381
iter 60 value 87.300605
iter 70 value 86.983307
iter 80 value 86.470747
iter 90 value 85.543256
iter 100 value 84.787920
final value 84.787920
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 129.390093
iter 10 value 92.977887
iter 20 value 89.433099
iter 30 value 88.598740
iter 40 value 87.605961
iter 50 value 86.738703
iter 60 value 85.831680
iter 70 value 85.162928
iter 80 value 84.151015
iter 90 value 83.878060
iter 100 value 83.706423
final value 83.706423
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 122.922375
iter 10 value 94.085301
iter 20 value 94.054140
iter 30 value 86.264128
iter 40 value 85.519756
iter 50 value 84.904958
iter 60 value 84.596820
iter 70 value 84.562310
iter 80 value 84.480342
iter 90 value 83.954013
iter 100 value 83.608502
final value 83.608502
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.356019
iter 10 value 94.112359
iter 20 value 92.645264
iter 30 value 88.876301
iter 40 value 87.698988
iter 50 value 86.306866
iter 60 value 85.275473
iter 70 value 84.819969
iter 80 value 84.227638
iter 90 value 84.028830
iter 100 value 83.732745
final value 83.732745
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.089631
iter 10 value 91.868850
iter 20 value 89.568987
iter 30 value 88.148818
iter 40 value 87.314074
iter 50 value 86.556628
iter 60 value 86.224801
iter 70 value 85.762951
iter 80 value 85.598387
iter 90 value 85.484660
iter 100 value 85.421303
final value 85.421303
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 133.736304
iter 10 value 93.937942
iter 20 value 89.755488
iter 30 value 88.015834
iter 40 value 87.937646
iter 50 value 87.699587
iter 60 value 85.627875
iter 70 value 84.450914
iter 80 value 83.844345
iter 90 value 83.474314
iter 100 value 83.204039
final value 83.204039
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.015660
final value 94.054574
converged
Fitting Repeat 2
# weights: 103
initial value 94.406733
final value 94.054831
converged
Fitting Repeat 3
# weights: 103
initial value 102.208255
final value 94.054685
converged
Fitting Repeat 4
# weights: 103
initial value 98.161747
final value 94.054690
converged
Fitting Repeat 5
# weights: 103
initial value 101.790092
final value 93.837542
converged
Fitting Repeat 1
# weights: 305
initial value 98.086785
iter 10 value 94.057698
iter 20 value 93.893100
iter 30 value 88.120827
iter 40 value 88.000961
iter 50 value 87.992456
iter 60 value 87.977272
iter 70 value 87.887144
iter 80 value 87.859454
iter 90 value 87.796287
iter 100 value 87.789807
final value 87.789807
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.841946
iter 10 value 94.051823
iter 20 value 93.327171
iter 30 value 93.270480
iter 40 value 91.984769
iter 50 value 91.977441
iter 60 value 89.271844
iter 70 value 88.319371
iter 80 value 87.447282
iter 90 value 87.138328
iter 100 value 85.704950
final value 85.704950
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.123037
iter 10 value 93.841369
iter 20 value 93.784616
iter 30 value 87.321327
final value 87.209797
converged
Fitting Repeat 4
# weights: 305
initial value 95.543118
iter 10 value 92.491407
iter 20 value 92.459355
iter 30 value 92.459033
iter 40 value 92.455448
iter 50 value 89.256392
iter 60 value 85.745257
iter 70 value 84.746920
iter 80 value 84.651309
iter 90 value 84.602302
iter 100 value 84.268766
final value 84.268766
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 98.465694
iter 10 value 93.340324
iter 20 value 93.326955
iter 30 value 92.133899
iter 40 value 87.610140
iter 50 value 85.026336
iter 60 value 84.395739
iter 70 value 84.380185
iter 80 value 84.358661
iter 90 value 84.293767
iter 100 value 84.020964
final value 84.020964
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.703126
iter 10 value 94.061622
iter 20 value 93.634321
iter 30 value 93.319340
iter 40 value 93.317836
iter 50 value 91.152885
iter 60 value 87.507718
iter 70 value 87.485684
iter 80 value 87.438779
iter 90 value 87.155923
final value 87.155759
converged
Fitting Repeat 2
# weights: 507
initial value 100.810492
iter 10 value 93.331771
iter 20 value 93.322502
iter 30 value 93.258752
iter 40 value 93.257971
final value 93.257849
converged
Fitting Repeat 3
# weights: 507
initial value 93.423601
iter 10 value 90.283955
iter 20 value 90.283025
iter 30 value 90.202716
iter 40 value 90.194373
final value 90.193484
converged
Fitting Repeat 4
# weights: 507
initial value 103.544990
iter 10 value 92.324748
iter 20 value 90.825051
iter 30 value 90.820277
iter 40 value 88.672554
iter 50 value 87.751138
iter 60 value 87.747246
iter 70 value 87.744773
iter 80 value 87.477655
iter 90 value 87.220251
final value 87.220214
converged
Fitting Repeat 5
# weights: 507
initial value 97.340184
iter 10 value 94.060321
iter 20 value 93.591820
iter 30 value 87.470179
iter 40 value 85.941906
iter 50 value 84.102612
iter 60 value 83.331853
iter 70 value 83.125566
iter 80 value 83.116051
iter 90 value 83.114884
iter 100 value 83.050710
final value 83.050710
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.515671
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 98.540101
final value 94.466823
converged
Fitting Repeat 3
# weights: 103
initial value 97.815566
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 103.154669
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 107.478134
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 101.879549
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 109.045034
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 94.060257
iter 10 value 86.307985
final value 86.307887
converged
Fitting Repeat 4
# weights: 305
initial value 98.344892
final value 94.466823
converged
Fitting Repeat 5
# weights: 305
initial value 101.147068
final value 94.466823
converged
Fitting Repeat 1
# weights: 507
initial value 95.829546
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 95.858663
iter 10 value 94.139558
iter 20 value 94.139380
final value 94.139368
converged
Fitting Repeat 3
# weights: 507
initial value 114.072779
iter 10 value 92.258857
iter 20 value 90.551114
iter 30 value 90.547767
final value 90.547764
converged
Fitting Repeat 4
# weights: 507
initial value 123.189547
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 96.735611
iter 10 value 94.389914
final value 94.389548
converged
Fitting Repeat 1
# weights: 103
initial value 102.283089
iter 10 value 94.488561
iter 20 value 93.015800
iter 30 value 85.043435
iter 40 value 84.529638
iter 50 value 84.448222
iter 60 value 82.764305
iter 70 value 81.921392
iter 80 value 81.652293
iter 90 value 81.617668
iter 100 value 81.592839
final value 81.592839
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.029371
iter 10 value 94.489484
iter 20 value 86.263068
iter 30 value 83.145756
iter 40 value 82.528576
iter 50 value 82.177003
iter 60 value 81.834431
iter 70 value 81.610101
iter 80 value 81.592102
iter 80 value 81.592102
iter 80 value 81.592102
final value 81.592102
converged
Fitting Repeat 3
# weights: 103
initial value 100.158373
iter 10 value 94.481105
iter 20 value 91.517947
iter 30 value 88.296961
iter 40 value 86.166677
iter 50 value 79.684315
iter 60 value 79.310587
iter 70 value 79.099412
iter 80 value 78.947976
final value 78.944423
converged
Fitting Repeat 4
# weights: 103
initial value 100.729281
iter 10 value 93.661303
iter 20 value 86.052848
iter 30 value 83.147222
iter 40 value 82.320458
iter 50 value 82.049545
iter 60 value 81.988336
iter 70 value 80.346097
iter 80 value 79.549675
iter 90 value 79.542448
iter 100 value 79.400604
final value 79.400604
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.389981
iter 10 value 94.453166
iter 20 value 92.604220
iter 30 value 90.341063
iter 40 value 90.252780
iter 50 value 83.247230
iter 60 value 82.160254
iter 70 value 81.862178
iter 80 value 81.719655
iter 90 value 81.478025
iter 100 value 81.285893
final value 81.285893
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 115.101592
iter 10 value 94.259632
iter 20 value 87.383460
iter 30 value 84.290645
iter 40 value 81.159766
iter 50 value 79.483079
iter 60 value 78.581771
iter 70 value 78.016934
iter 80 value 77.969016
iter 90 value 77.966584
iter 100 value 77.966433
final value 77.966433
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.212756
iter 10 value 94.564164
iter 20 value 87.460352
iter 30 value 85.291374
iter 40 value 83.046971
iter 50 value 82.531257
iter 60 value 82.346426
iter 70 value 81.304185
iter 80 value 79.696104
iter 90 value 78.715420
iter 100 value 78.158491
final value 78.158491
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.111682
iter 10 value 94.486852
iter 20 value 94.247252
iter 30 value 86.450397
iter 40 value 85.502203
iter 50 value 84.807947
iter 60 value 82.864319
iter 70 value 81.427345
iter 80 value 79.261071
iter 90 value 79.053689
iter 100 value 78.690446
final value 78.690446
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.900477
iter 10 value 94.539362
iter 20 value 92.686932
iter 30 value 87.337403
iter 40 value 87.074308
iter 50 value 86.146023
iter 60 value 83.009218
iter 70 value 80.620665
iter 80 value 78.940194
iter 90 value 78.422169
iter 100 value 78.128505
final value 78.128505
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.829364
iter 10 value 95.831455
iter 20 value 94.242076
iter 30 value 87.207443
iter 40 value 86.681265
iter 50 value 86.278486
iter 60 value 81.771878
iter 70 value 79.058862
iter 80 value 78.643790
iter 90 value 78.261453
iter 100 value 77.877969
final value 77.877969
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.738836
iter 10 value 93.947561
iter 20 value 85.347116
iter 30 value 84.241081
iter 40 value 83.437324
iter 50 value 81.266009
iter 60 value 81.018446
iter 70 value 80.607653
iter 80 value 79.244928
iter 90 value 78.811685
iter 100 value 78.626110
final value 78.626110
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.587319
iter 10 value 94.675849
iter 20 value 93.987367
iter 30 value 88.372934
iter 40 value 84.014671
iter 50 value 83.289351
iter 60 value 81.225180
iter 70 value 79.797116
iter 80 value 79.345218
iter 90 value 79.147746
iter 100 value 78.884940
final value 78.884940
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.970963
iter 10 value 99.835888
iter 20 value 90.218618
iter 30 value 84.495380
iter 40 value 82.815241
iter 50 value 82.034606
iter 60 value 81.793810
iter 70 value 81.640435
iter 80 value 80.995088
iter 90 value 79.287802
iter 100 value 78.583271
final value 78.583271
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.183715
iter 10 value 93.495021
iter 20 value 86.508423
iter 30 value 84.380949
iter 40 value 81.060534
iter 50 value 80.591414
iter 60 value 80.310832
iter 70 value 80.254289
iter 80 value 80.198285
iter 90 value 79.896615
iter 100 value 79.060073
final value 79.060073
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.919488
iter 10 value 93.781194
iter 20 value 87.916787
iter 30 value 84.249662
iter 40 value 83.330247
iter 50 value 81.179684
iter 60 value 80.071898
iter 70 value 79.659602
iter 80 value 79.444340
iter 90 value 79.004671
iter 100 value 78.986076
final value 78.986076
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.852690
final value 94.485806
converged
Fitting Repeat 2
# weights: 103
initial value 98.738239
final value 94.485557
converged
Fitting Repeat 3
# weights: 103
initial value 101.749019
final value 94.486077
converged
Fitting Repeat 4
# weights: 103
initial value 101.344803
iter 10 value 94.485860
iter 20 value 94.484214
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.540155
final value 94.485835
converged
Fitting Repeat 1
# weights: 305
initial value 98.484097
iter 10 value 94.486429
iter 20 value 94.076673
iter 30 value 90.856858
iter 40 value 90.746558
iter 50 value 90.746383
iter 60 value 90.050887
iter 70 value 90.019291
final value 90.019097
converged
Fitting Repeat 2
# weights: 305
initial value 95.362251
iter 10 value 94.471795
iter 20 value 94.467231
iter 30 value 92.950821
iter 40 value 91.202115
iter 50 value 89.902267
iter 60 value 84.180885
iter 70 value 81.232692
iter 80 value 79.783849
iter 90 value 79.777794
iter 100 value 79.777488
final value 79.777488
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.341209
iter 10 value 94.488396
iter 20 value 94.450631
iter 30 value 85.565048
iter 40 value 81.476099
iter 50 value 81.265076
final value 81.260971
converged
Fitting Repeat 4
# weights: 305
initial value 97.230132
iter 10 value 94.471771
iter 20 value 94.468377
final value 94.467350
converged
Fitting Repeat 5
# weights: 305
initial value 118.117974
iter 10 value 94.488854
iter 20 value 94.484237
final value 94.484225
converged
Fitting Repeat 1
# weights: 507
initial value 104.913357
iter 10 value 94.492364
iter 20 value 94.445381
iter 30 value 94.443481
iter 30 value 94.443480
iter 30 value 94.443480
final value 94.443480
converged
Fitting Repeat 2
# weights: 507
initial value 107.565760
iter 10 value 94.492929
iter 20 value 94.449321
iter 30 value 85.172878
iter 40 value 81.032386
iter 50 value 79.062604
iter 60 value 77.989336
iter 70 value 77.328464
iter 80 value 77.113702
iter 90 value 76.873182
iter 100 value 76.831361
final value 76.831361
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.292099
iter 10 value 94.475213
iter 20 value 94.464514
iter 30 value 90.629513
final value 90.549340
converged
Fitting Repeat 4
# weights: 507
initial value 103.703498
iter 10 value 94.493479
iter 20 value 94.484716
iter 30 value 93.941489
iter 40 value 91.826021
iter 50 value 83.637912
iter 60 value 83.240211
iter 70 value 82.190137
iter 80 value 81.897281
iter 90 value 81.271816
iter 100 value 81.264775
final value 81.264775
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.990376
iter 10 value 93.756183
iter 20 value 93.642094
iter 30 value 93.611763
iter 40 value 93.608844
iter 50 value 93.606771
iter 60 value 93.605179
final value 93.605112
converged
Fitting Repeat 1
# weights: 103
initial value 94.836174
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 102.770346
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 97.290773
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.704230
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.473603
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.175001
final value 94.312038
converged
Fitting Repeat 2
# weights: 305
initial value 106.235775
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 97.922525
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 96.270253
iter 10 value 90.098082
iter 20 value 86.107581
iter 30 value 85.145963
final value 85.101732
converged
Fitting Repeat 5
# weights: 305
initial value 99.270447
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 95.007228
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 111.621683
iter 10 value 93.936783
final value 93.936782
converged
Fitting Repeat 3
# weights: 507
initial value 105.254321
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 139.629415
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 5
# weights: 507
initial value 119.635290
iter 10 value 94.203838
final value 94.203552
converged
Fitting Repeat 1
# weights: 103
initial value 99.804428
iter 10 value 94.487549
iter 20 value 94.381128
iter 30 value 90.258581
iter 40 value 88.210897
iter 50 value 87.256406
iter 60 value 86.310573
iter 70 value 85.393507
iter 80 value 85.152378
iter 90 value 84.898605
iter 100 value 84.847432
final value 84.847432
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.738476
iter 10 value 94.489098
iter 20 value 91.654301
iter 30 value 86.299106
iter 40 value 85.951390
iter 50 value 85.915019
iter 60 value 85.913033
iter 60 value 85.913033
iter 60 value 85.913033
final value 85.913033
converged
Fitting Repeat 3
# weights: 103
initial value 97.315262
iter 10 value 94.548413
iter 20 value 94.321194
iter 30 value 89.951989
iter 40 value 89.148144
iter 50 value 88.332752
iter 60 value 87.844220
iter 70 value 87.710283
iter 80 value 85.369163
iter 90 value 84.858465
iter 100 value 84.499903
final value 84.499903
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.942714
iter 10 value 94.496064
iter 20 value 94.322759
iter 30 value 93.330715
iter 40 value 88.626414
iter 50 value 86.256360
iter 60 value 86.165144
iter 70 value 86.163101
final value 86.163043
converged
Fitting Repeat 5
# weights: 103
initial value 102.926318
iter 10 value 94.370614
iter 20 value 90.970988
iter 30 value 89.179343
iter 40 value 87.025344
iter 50 value 86.224504
iter 60 value 86.163223
final value 86.163176
converged
Fitting Repeat 1
# weights: 305
initial value 120.829514
iter 10 value 94.320341
iter 20 value 87.132465
iter 30 value 86.369169
iter 40 value 85.664438
iter 50 value 85.588264
iter 60 value 85.392411
iter 70 value 84.880405
iter 80 value 83.867691
iter 90 value 83.726476
iter 100 value 83.657243
final value 83.657243
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.277429
iter 10 value 94.339221
iter 20 value 88.847825
iter 30 value 86.712673
iter 40 value 86.097852
iter 50 value 86.001228
iter 60 value 85.878650
iter 70 value 85.420103
iter 80 value 84.652154
iter 90 value 84.352603
iter 100 value 84.327755
final value 84.327755
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.410405
iter 10 value 95.529582
iter 20 value 90.829979
iter 30 value 89.066036
iter 40 value 86.510957
iter 50 value 85.942938
iter 60 value 85.914551
iter 70 value 85.731048
iter 80 value 84.982564
iter 90 value 84.587654
iter 100 value 84.426540
final value 84.426540
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.112990
iter 10 value 96.270402
iter 20 value 94.315569
iter 30 value 86.860705
iter 40 value 86.549753
iter 50 value 86.141954
iter 60 value 85.321523
iter 70 value 84.719584
iter 80 value 84.360007
iter 90 value 83.568695
iter 100 value 83.437308
final value 83.437308
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.613188
iter 10 value 94.471860
iter 20 value 94.293593
iter 30 value 92.125441
iter 40 value 88.798602
iter 50 value 88.742401
iter 60 value 87.939936
iter 70 value 84.672800
iter 80 value 84.018219
iter 90 value 83.761550
iter 100 value 83.630855
final value 83.630855
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.637354
iter 10 value 94.529002
iter 20 value 94.117452
iter 30 value 94.089991
iter 40 value 94.019482
iter 50 value 93.405841
iter 60 value 90.961964
iter 70 value 86.440618
iter 80 value 85.360321
iter 90 value 84.895443
iter 100 value 84.214914
final value 84.214914
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.582330
iter 10 value 94.560142
iter 20 value 91.867051
iter 30 value 91.129413
iter 40 value 87.035100
iter 50 value 85.187610
iter 60 value 83.316655
iter 70 value 83.029077
iter 80 value 82.771448
iter 90 value 82.749256
iter 100 value 82.737242
final value 82.737242
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 126.953882
iter 10 value 94.627345
iter 20 value 94.217075
iter 30 value 87.536876
iter 40 value 85.841997
iter 50 value 85.682972
iter 60 value 84.502665
iter 70 value 83.764096
iter 80 value 83.556423
iter 90 value 83.304727
iter 100 value 83.007081
final value 83.007081
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 114.880112
iter 10 value 94.955128
iter 20 value 91.461999
iter 30 value 87.719472
iter 40 value 86.330136
iter 50 value 85.189667
iter 60 value 84.946526
iter 70 value 83.765790
iter 80 value 83.212157
iter 90 value 83.054052
iter 100 value 82.856738
final value 82.856738
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.737227
iter 10 value 94.170146
iter 20 value 86.768789
iter 30 value 86.230254
iter 40 value 85.978527
iter 50 value 85.099354
iter 60 value 84.041472
iter 70 value 83.349424
iter 80 value 83.100193
iter 90 value 82.897107
iter 100 value 82.833122
final value 82.833122
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 124.215614
iter 10 value 94.310583
final value 94.309725
converged
Fitting Repeat 2
# weights: 103
initial value 95.212193
iter 10 value 94.485919
iter 20 value 94.484254
iter 30 value 94.355304
final value 94.354514
converged
Fitting Repeat 3
# weights: 103
initial value 99.071520
final value 94.485901
converged
Fitting Repeat 4
# weights: 103
initial value 103.532890
final value 94.485813
converged
Fitting Repeat 5
# weights: 103
initial value 95.019624
iter 10 value 94.090565
iter 20 value 93.696619
iter 30 value 86.206853
iter 40 value 86.039841
iter 50 value 86.006391
iter 60 value 85.989845
iter 70 value 84.963188
iter 80 value 84.553914
iter 90 value 83.796184
iter 100 value 83.764308
final value 83.764308
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 95.539580
iter 10 value 92.337774
iter 20 value 89.087803
iter 30 value 88.821443
iter 40 value 88.815262
iter 50 value 88.813122
iter 60 value 88.228463
iter 70 value 87.562957
iter 80 value 87.187598
iter 90 value 86.196672
iter 100 value 85.885067
final value 85.885067
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 121.113697
iter 10 value 94.228598
iter 20 value 94.109978
iter 30 value 92.718448
iter 40 value 88.342360
iter 50 value 88.327826
iter 60 value 87.818233
iter 70 value 85.086711
iter 80 value 82.194212
iter 90 value 81.805996
iter 100 value 81.778279
final value 81.778279
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.080480
iter 10 value 94.488958
iter 20 value 94.330465
iter 30 value 89.258313
iter 40 value 86.157549
iter 50 value 86.152035
final value 86.151909
converged
Fitting Repeat 4
# weights: 305
initial value 97.425807
iter 10 value 94.489165
iter 20 value 94.354473
final value 94.354460
converged
Fitting Repeat 5
# weights: 305
initial value 98.588552
iter 10 value 94.488815
iter 20 value 94.484294
final value 94.484284
converged
Fitting Repeat 1
# weights: 507
initial value 139.333198
iter 10 value 94.362383
iter 20 value 94.356052
iter 30 value 93.985545
iter 40 value 92.185241
iter 50 value 86.070227
iter 60 value 84.527214
iter 70 value 84.404875
iter 80 value 84.362366
iter 90 value 84.354427
iter 100 value 84.301730
final value 84.301730
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.181179
iter 10 value 94.492140
iter 20 value 94.285576
iter 30 value 88.774233
iter 40 value 88.603475
iter 50 value 86.839826
iter 60 value 86.282237
iter 70 value 86.232602
iter 80 value 86.232244
final value 86.231832
converged
Fitting Repeat 3
# weights: 507
initial value 101.059441
iter 10 value 94.362730
iter 20 value 94.359147
iter 30 value 94.318312
iter 40 value 94.000031
iter 50 value 93.998523
final value 93.998449
converged
Fitting Repeat 4
# weights: 507
initial value 94.715472
iter 10 value 94.492506
iter 20 value 94.434945
iter 30 value 94.057384
iter 40 value 94.057283
iter 50 value 88.550322
final value 88.101806
converged
Fitting Repeat 5
# weights: 507
initial value 129.986618
iter 10 value 86.495576
iter 20 value 86.410159
iter 30 value 85.296854
iter 40 value 84.277261
iter 50 value 84.275720
iter 60 value 84.239845
iter 70 value 84.142692
iter 80 value 83.610663
iter 90 value 82.581378
iter 100 value 82.068766
final value 82.068766
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 125.826736
iter 10 value 116.896978
iter 20 value 112.030092
iter 30 value 107.165021
iter 40 value 105.241315
iter 50 value 104.033337
iter 60 value 101.733915
iter 70 value 101.569242
iter 80 value 101.491894
iter 90 value 101.257918
iter 100 value 100.847024
final value 100.847024
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 125.881654
iter 10 value 116.904404
iter 20 value 107.640658
iter 30 value 106.514085
iter 40 value 105.456534
iter 50 value 105.198124
iter 60 value 104.972456
iter 70 value 103.189344
iter 80 value 102.813781
iter 90 value 102.601893
iter 100 value 102.088797
final value 102.088797
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 125.048801
iter 10 value 117.784603
iter 20 value 110.869981
iter 30 value 109.457740
iter 40 value 108.402274
iter 50 value 108.025344
iter 60 value 104.655814
iter 70 value 102.663324
iter 80 value 101.982999
iter 90 value 101.551619
iter 100 value 101.385195
final value 101.385195
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 128.742926
iter 10 value 116.467583
iter 20 value 115.335023
iter 30 value 114.890459
iter 40 value 107.593653
iter 50 value 107.284129
iter 60 value 106.792278
iter 70 value 103.837308
iter 80 value 102.529331
iter 90 value 101.965780
iter 100 value 101.747916
final value 101.747916
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 123.922480
iter 10 value 118.031767
iter 20 value 117.145837
iter 30 value 112.838882
iter 40 value 111.309797
iter 50 value 110.784426
iter 60 value 109.205020
iter 70 value 103.853029
iter 80 value 103.042285
iter 90 value 101.698357
iter 100 value 101.461880
final value 101.461880
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Mar 17 00:26:41 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
41.730 1.131 92.682
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.479 | 0.569 | 34.050 | |
| FreqInteractors | 0.420 | 0.032 | 0.453 | |
| calculateAAC | 0.033 | 0.001 | 0.034 | |
| calculateAutocor | 0.272 | 0.016 | 0.289 | |
| calculateCTDC | 0.075 | 0.001 | 0.075 | |
| calculateCTDD | 0.466 | 0.002 | 0.469 | |
| calculateCTDT | 0.147 | 0.002 | 0.150 | |
| calculateCTriad | 0.383 | 0.008 | 0.390 | |
| calculateDC | 0.085 | 0.007 | 0.093 | |
| calculateF | 0.304 | 0.000 | 0.304 | |
| calculateKSAAP | 0.103 | 0.004 | 0.108 | |
| calculateQD_Sm | 1.807 | 0.024 | 1.831 | |
| calculateTC | 1.554 | 0.150 | 1.705 | |
| calculateTC_Sm | 0.303 | 0.003 | 0.306 | |
| corr_plot | 35.528 | 0.409 | 35.986 | |
| enrichfindP | 0.617 | 0.041 | 13.642 | |
| enrichfind_hp | 0.073 | 0.002 | 1.771 | |
| enrichplot | 0.535 | 0.007 | 0.542 | |
| filter_missing_values | 0.002 | 0.000 | 0.001 | |
| getFASTA | 0.429 | 0.031 | 4.055 | |
| getHPI | 0.001 | 0.002 | 0.002 | |
| get_negativePPI | 0.003 | 0.002 | 0.005 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.003 | 0.002 | 0.004 | |
| plotPPI | 0.095 | 0.009 | 0.104 | |
| pred_ensembel | 13.089 | 0.301 | 12.092 | |
| var_imp | 35.544 | 0.639 | 37.145 | |