| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-06 11:34 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4663 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1007/2366 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.19.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: HPiP |
| Version: 1.19.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HPiP_1.19.0.tar.gz |
| StartedAt: 2026-05-05 11:09:28 -0000 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 11:16:29 -0000 (Tue, 05 May 2026) |
| EllapsedTime: 421.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HPiP_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.19.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 34.849 0.152 35.073
var_imp 33.667 0.369 34.201
FSmethod 32.988 0.423 33.472
pred_ensembel 17.412 0.164 16.390
enrichfindP 0.530 0.032 25.077
getFASTA 0.080 0.000 6.094
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.24-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.19.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 102.365867
final value 94.354396
converged
Fitting Repeat 2
# weights: 103
initial value 97.966816
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 104.839023
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.725724
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.595378
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.216342
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.130784
iter 10 value 94.320300
iter 10 value 94.320299
iter 10 value 94.320299
final value 94.320299
converged
Fitting Repeat 3
# weights: 305
initial value 111.391227
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 102.867347
iter 10 value 86.794600
iter 20 value 85.005603
iter 30 value 84.996783
final value 84.996734
converged
Fitting Repeat 5
# weights: 305
initial value 95.993471
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 125.460247
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 104.383841
final value 94.484210
converged
Fitting Repeat 3
# weights: 507
initial value 101.515895
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 101.913179
iter 10 value 87.587361
iter 20 value 85.868591
final value 85.868378
converged
Fitting Repeat 5
# weights: 507
initial value 110.616812
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.939883
iter 10 value 94.486555
iter 20 value 93.793810
iter 30 value 93.712008
iter 40 value 93.521384
iter 50 value 93.490412
final value 93.490241
converged
Fitting Repeat 2
# weights: 103
initial value 96.798955
iter 10 value 94.493933
iter 20 value 94.444990
iter 30 value 93.782903
iter 40 value 93.684828
iter 50 value 93.516026
iter 60 value 93.490603
iter 70 value 93.490243
final value 93.490241
converged
Fitting Repeat 3
# weights: 103
initial value 105.392229
iter 10 value 94.486697
iter 20 value 84.036625
iter 30 value 83.893851
iter 40 value 83.537063
iter 50 value 83.429866
iter 60 value 83.212588
iter 70 value 83.209227
final value 83.209213
converged
Fitting Repeat 4
# weights: 103
initial value 99.896262
iter 10 value 87.403122
iter 20 value 84.468458
iter 30 value 82.298758
iter 40 value 79.049991
iter 50 value 79.004422
final value 79.001521
converged
Fitting Repeat 5
# weights: 103
initial value 99.036842
iter 10 value 93.881617
iter 20 value 87.348258
iter 30 value 83.652786
iter 40 value 83.397221
iter 50 value 83.242831
iter 60 value 83.209724
final value 83.209212
converged
Fitting Repeat 1
# weights: 305
initial value 107.975520
iter 10 value 94.422684
iter 20 value 90.952490
iter 30 value 88.565960
iter 40 value 84.151248
iter 50 value 81.398037
iter 60 value 80.149116
iter 70 value 80.040431
iter 80 value 78.818677
iter 90 value 78.298921
iter 100 value 77.892175
final value 77.892175
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 121.098575
iter 10 value 94.602906
iter 20 value 93.572797
iter 30 value 93.361256
iter 40 value 87.342416
iter 50 value 84.627416
iter 60 value 83.702023
iter 70 value 83.446152
iter 80 value 83.364000
iter 90 value 83.221083
iter 100 value 81.216127
final value 81.216127
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.270058
iter 10 value 93.514940
iter 20 value 85.021990
iter 30 value 84.199796
iter 40 value 83.812674
iter 50 value 80.928015
iter 60 value 79.306680
iter 70 value 78.567364
iter 80 value 78.382362
iter 90 value 78.321158
iter 100 value 78.239199
final value 78.239199
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.166360
iter 10 value 94.461217
iter 20 value 92.013702
iter 30 value 84.230677
iter 40 value 81.428481
iter 50 value 79.780120
iter 60 value 79.644205
iter 70 value 79.177128
iter 80 value 78.948391
iter 90 value 78.852076
iter 100 value 78.694866
final value 78.694866
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.099522
iter 10 value 94.504268
iter 20 value 94.396682
iter 30 value 93.854129
iter 40 value 93.760229
iter 50 value 93.680033
iter 60 value 88.550767
iter 70 value 86.799695
iter 80 value 83.550698
iter 90 value 83.157824
iter 100 value 82.284985
final value 82.284985
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.508631
iter 10 value 94.420402
iter 20 value 89.452825
iter 30 value 82.462036
iter 40 value 81.393859
iter 50 value 79.645554
iter 60 value 78.577684
iter 70 value 78.269833
iter 80 value 77.893063
iter 90 value 77.716257
iter 100 value 77.704449
final value 77.704449
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.227079
iter 10 value 94.739958
iter 20 value 94.507864
iter 30 value 88.260301
iter 40 value 86.764693
iter 50 value 83.822044
iter 60 value 81.493075
iter 70 value 80.850702
iter 80 value 80.670361
iter 90 value 79.879334
iter 100 value 79.594866
final value 79.594866
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 131.363144
iter 10 value 94.445727
iter 20 value 91.343821
iter 30 value 86.178229
iter 40 value 84.787068
iter 50 value 83.947405
iter 60 value 83.743306
iter 70 value 82.218413
iter 80 value 81.293019
iter 90 value 80.061578
iter 100 value 79.928981
final value 79.928981
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.381588
iter 10 value 94.853253
iter 20 value 94.533395
iter 30 value 90.558463
iter 40 value 88.312757
iter 50 value 86.495420
iter 60 value 84.170850
iter 70 value 80.375515
iter 80 value 79.346733
iter 90 value 78.908939
iter 100 value 78.726695
final value 78.726695
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.277526
iter 10 value 96.501204
iter 20 value 87.942882
iter 30 value 82.131990
iter 40 value 79.485666
iter 50 value 78.387034
iter 60 value 78.211221
iter 70 value 78.002109
iter 80 value 77.821455
iter 90 value 77.684798
iter 100 value 77.618468
final value 77.618468
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.993759
final value 94.485859
converged
Fitting Repeat 2
# weights: 103
initial value 100.054986
final value 94.485981
converged
Fitting Repeat 3
# weights: 103
initial value 102.932754
final value 94.485818
converged
Fitting Repeat 4
# weights: 103
initial value 103.467278
final value 94.485760
converged
Fitting Repeat 5
# weights: 103
initial value 110.350477
final value 94.485818
converged
Fitting Repeat 1
# weights: 305
initial value 102.817109
iter 10 value 94.488809
iter 20 value 93.662875
iter 30 value 93.022666
iter 40 value 82.927394
iter 50 value 82.523421
iter 60 value 82.522455
iter 70 value 82.521240
iter 80 value 82.520593
iter 90 value 82.503138
iter 100 value 82.477578
final value 82.477578
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.967227
iter 10 value 94.489147
iter 20 value 94.460511
iter 30 value 93.823168
iter 40 value 93.449635
iter 50 value 88.207390
iter 60 value 88.196194
final value 88.196117
converged
Fitting Repeat 3
# weights: 305
initial value 100.288355
iter 10 value 94.488842
iter 20 value 93.551893
iter 30 value 85.426367
iter 40 value 85.423888
iter 50 value 84.651869
iter 60 value 84.535021
iter 70 value 84.532772
final value 84.532120
converged
Fitting Repeat 4
# weights: 305
initial value 98.289950
iter 10 value 94.359278
iter 20 value 94.356381
iter 30 value 94.355706
iter 40 value 93.730271
iter 50 value 93.660033
final value 93.624150
converged
Fitting Repeat 5
# weights: 305
initial value 106.795640
iter 10 value 94.488863
iter 20 value 94.484422
iter 30 value 94.484222
final value 94.484213
converged
Fitting Repeat 1
# weights: 507
initial value 102.889854
iter 10 value 94.333428
iter 20 value 94.221676
iter 30 value 94.217264
iter 40 value 94.205053
iter 50 value 86.990238
iter 60 value 85.827307
iter 70 value 85.494869
iter 80 value 82.536075
iter 90 value 80.925123
iter 100 value 80.910003
final value 80.910003
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.443587
iter 10 value 93.696751
iter 20 value 93.689272
iter 30 value 93.624015
iter 40 value 85.572152
final value 85.512956
converged
Fitting Repeat 3
# weights: 507
initial value 114.321034
iter 10 value 94.363236
iter 20 value 94.308734
iter 30 value 93.674307
iter 40 value 93.622406
iter 50 value 83.854715
iter 60 value 82.452258
iter 70 value 82.397111
iter 80 value 82.387816
iter 90 value 82.169482
iter 100 value 81.818078
final value 81.818078
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 98.257330
iter 10 value 94.362469
iter 20 value 94.362300
iter 30 value 94.355621
iter 40 value 93.594950
iter 50 value 92.173296
iter 60 value 91.795836
iter 70 value 91.680905
iter 80 value 91.680427
iter 90 value 91.677097
iter 100 value 91.676414
final value 91.676414
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.545290
iter 10 value 93.817443
iter 20 value 93.602494
iter 30 value 88.549582
iter 40 value 86.082240
iter 50 value 86.065727
iter 60 value 81.469380
iter 70 value 81.178381
iter 80 value 80.070715
iter 90 value 79.879243
iter 100 value 79.868046
final value 79.868046
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.736870
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 94.115505
final value 94.052913
converged
Fitting Repeat 3
# weights: 103
initial value 94.865539
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 97.562940
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.261930
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 108.937482
final value 93.628453
converged
Fitting Repeat 2
# weights: 305
initial value 105.058276
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 95.736654
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 94.667561
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 112.069596
iter 10 value 93.663393
final value 93.628453
converged
Fitting Repeat 1
# weights: 507
initial value 102.652651
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 147.272045
iter 10 value 94.008731
final value 94.008696
converged
Fitting Repeat 3
# weights: 507
initial value 97.151430
final value 94.008696
converged
Fitting Repeat 4
# weights: 507
initial value 101.411095
iter 10 value 93.437748
iter 20 value 85.005047
iter 30 value 84.085559
iter 40 value 84.075077
final value 84.075055
converged
Fitting Repeat 5
# weights: 507
initial value 103.060408
iter 10 value 93.046452
iter 20 value 91.691475
iter 30 value 83.728869
iter 30 value 83.728869
iter 30 value 83.728869
final value 83.728869
converged
Fitting Repeat 1
# weights: 103
initial value 99.360129
iter 10 value 94.056675
iter 20 value 93.646881
iter 30 value 91.831159
iter 40 value 91.408398
iter 50 value 91.135603
iter 60 value 91.094085
iter 60 value 91.094085
final value 91.094085
converged
Fitting Repeat 2
# weights: 103
initial value 101.430643
iter 10 value 94.056793
iter 20 value 93.195897
iter 30 value 85.625823
iter 40 value 84.545685
iter 50 value 83.788242
iter 60 value 83.373551
iter 70 value 83.321453
iter 80 value 83.290359
final value 83.290330
converged
Fitting Repeat 3
# weights: 103
initial value 98.472214
iter 10 value 90.187834
iter 20 value 86.135726
iter 30 value 85.189826
iter 40 value 84.913766
iter 50 value 84.102680
iter 60 value 83.731594
final value 83.703851
converged
Fitting Repeat 4
# weights: 103
initial value 100.765671
iter 10 value 89.215897
iter 20 value 87.022407
iter 30 value 86.517526
iter 40 value 84.016721
iter 50 value 83.775774
iter 60 value 83.389885
iter 70 value 83.356860
iter 80 value 83.096502
iter 90 value 83.055507
final value 83.055470
converged
Fitting Repeat 5
# weights: 103
initial value 101.851922
iter 10 value 94.056688
iter 20 value 93.320621
iter 30 value 86.808410
iter 40 value 84.519758
iter 50 value 84.208219
iter 60 value 83.797261
iter 70 value 83.709089
iter 80 value 83.491194
iter 90 value 82.905816
iter 100 value 82.894494
final value 82.894494
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 104.809359
iter 10 value 94.049225
iter 20 value 91.962017
iter 30 value 88.586191
iter 40 value 88.108474
iter 50 value 86.248130
iter 60 value 84.490720
iter 70 value 84.071887
iter 80 value 83.026333
iter 90 value 82.310515
iter 100 value 82.132826
final value 82.132826
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 109.576779
iter 10 value 94.031741
iter 20 value 87.768691
iter 30 value 83.714610
iter 40 value 83.123059
iter 50 value 82.908692
iter 60 value 81.632045
iter 70 value 80.913109
iter 80 value 80.646303
iter 90 value 80.558275
iter 100 value 80.451017
final value 80.451017
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.519604
iter 10 value 92.092567
iter 20 value 91.324907
iter 30 value 87.511460
iter 40 value 84.939875
iter 50 value 84.347282
iter 60 value 82.788033
iter 70 value 81.960093
iter 80 value 81.652412
iter 90 value 81.211945
iter 100 value 80.765353
final value 80.765353
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.200525
iter 10 value 94.481459
iter 20 value 90.905496
iter 30 value 86.769612
iter 40 value 86.242757
iter 50 value 85.103479
iter 60 value 83.950158
iter 70 value 83.842405
iter 80 value 83.288064
iter 90 value 82.374750
iter 100 value 81.122999
final value 81.122999
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.688967
iter 10 value 93.682072
iter 20 value 88.034538
iter 30 value 86.156752
iter 40 value 85.724464
iter 50 value 85.463751
iter 60 value 84.151811
iter 70 value 83.667138
iter 80 value 83.479051
iter 90 value 82.948177
iter 100 value 81.623539
final value 81.623539
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.032977
iter 10 value 94.232201
iter 20 value 91.081661
iter 30 value 86.971974
iter 40 value 83.883352
iter 50 value 82.748710
iter 60 value 81.460894
iter 70 value 80.857527
iter 80 value 80.585240
iter 90 value 80.561657
iter 100 value 80.497895
final value 80.497895
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 123.868567
iter 10 value 92.713275
iter 20 value 86.574510
iter 30 value 82.924029
iter 40 value 81.784042
iter 50 value 81.344688
iter 60 value 80.615891
iter 70 value 80.308214
iter 80 value 80.183069
iter 90 value 80.054240
iter 100 value 79.918782
final value 79.918782
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 114.861138
iter 10 value 97.950774
iter 20 value 90.151184
iter 30 value 88.335960
iter 40 value 84.330498
iter 50 value 82.938139
iter 60 value 82.507919
iter 70 value 82.439005
iter 80 value 82.265001
iter 90 value 81.916939
iter 100 value 81.813488
final value 81.813488
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 119.157898
iter 10 value 93.945998
iter 20 value 87.186245
iter 30 value 85.850918
iter 40 value 84.369042
iter 50 value 83.410567
iter 60 value 81.581585
iter 70 value 81.247856
iter 80 value 80.938652
iter 90 value 80.761767
iter 100 value 80.534657
final value 80.534657
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.767125
iter 10 value 94.787186
iter 20 value 93.743886
iter 30 value 92.511028
iter 40 value 86.713095
iter 50 value 83.546703
iter 60 value 83.045162
iter 70 value 82.769188
iter 80 value 82.306344
iter 90 value 81.829140
iter 100 value 81.368678
final value 81.368678
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.678727
final value 94.054640
converged
Fitting Repeat 2
# weights: 103
initial value 101.226962
final value 94.054626
converged
Fitting Repeat 3
# weights: 103
initial value 96.877655
final value 94.054466
converged
Fitting Repeat 4
# weights: 103
initial value 97.345079
iter 10 value 94.010313
iter 20 value 93.812943
iter 30 value 93.811456
iter 40 value 84.511034
iter 50 value 84.295445
iter 60 value 84.218285
iter 70 value 84.160306
iter 80 value 84.160132
final value 84.158473
converged
Fitting Repeat 5
# weights: 103
initial value 103.902637
final value 94.054597
converged
Fitting Repeat 1
# weights: 305
initial value 101.748182
iter 10 value 94.057675
iter 20 value 94.035549
iter 30 value 85.107639
iter 40 value 85.103190
iter 50 value 84.143532
final value 83.638305
converged
Fitting Repeat 2
# weights: 305
initial value 94.308255
iter 10 value 94.057142
iter 20 value 94.036833
iter 30 value 93.535802
iter 40 value 93.348662
iter 50 value 93.120588
iter 60 value 93.107610
iter 70 value 93.098177
final value 93.097395
converged
Fitting Repeat 3
# weights: 305
initial value 97.177423
iter 10 value 94.057452
iter 20 value 94.053036
iter 30 value 88.838167
iter 40 value 85.068122
iter 50 value 83.872308
iter 60 value 83.773460
iter 70 value 82.271707
iter 80 value 81.490823
iter 90 value 81.490480
iter 100 value 81.486449
final value 81.486449
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.365802
iter 10 value 94.057995
iter 20 value 94.052961
final value 94.052954
converged
Fitting Repeat 5
# weights: 305
initial value 113.193069
iter 10 value 94.058174
iter 20 value 93.766056
iter 30 value 91.619026
iter 40 value 89.608220
iter 50 value 89.606074
iter 60 value 89.605709
iter 70 value 89.107068
iter 80 value 88.795107
iter 90 value 85.699510
iter 100 value 85.551933
final value 85.551933
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 101.914117
iter 10 value 94.061301
iter 20 value 94.009469
final value 94.009453
converged
Fitting Repeat 2
# weights: 507
initial value 99.241821
iter 10 value 93.489757
iter 20 value 93.440341
iter 30 value 93.430078
iter 40 value 93.423069
iter 50 value 89.629996
iter 60 value 87.326794
iter 70 value 86.080103
iter 80 value 82.637890
iter 90 value 81.123010
iter 100 value 81.016835
final value 81.016835
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 100.069107
iter 10 value 94.016345
iter 20 value 93.887508
iter 30 value 84.957347
iter 40 value 83.766918
iter 50 value 83.298126
iter 60 value 83.296695
iter 70 value 83.296111
iter 80 value 83.275460
final value 83.275002
converged
Fitting Repeat 4
# weights: 507
initial value 96.238191
iter 10 value 93.637311
iter 20 value 93.631827
iter 30 value 93.418768
iter 40 value 93.279358
iter 40 value 93.279358
iter 50 value 84.882527
iter 60 value 84.618906
iter 70 value 84.352504
iter 80 value 84.279876
iter 90 value 84.221974
iter 100 value 84.221648
final value 84.221648
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.979038
iter 10 value 85.862157
iter 20 value 84.579035
iter 30 value 83.850638
iter 40 value 83.180142
iter 50 value 83.175063
iter 60 value 83.147940
iter 70 value 83.129443
iter 80 value 83.129286
final value 83.129280
converged
Fitting Repeat 1
# weights: 103
initial value 95.119055
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 96.605059
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.803030
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 100.510059
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 104.473456
final value 94.467391
converged
Fitting Repeat 1
# weights: 305
initial value 97.472484
iter 10 value 91.986346
iter 20 value 91.568583
iter 30 value 91.544192
final value 91.543902
converged
Fitting Repeat 2
# weights: 305
initial value 96.942732
iter 10 value 94.402619
final value 93.508117
converged
Fitting Repeat 3
# weights: 305
initial value 106.080071
iter 10 value 94.134454
iter 10 value 94.134454
iter 10 value 94.134454
final value 94.134454
converged
Fitting Repeat 4
# weights: 305
initial value 125.378499
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 111.682129
iter 10 value 94.467391
iter 10 value 94.467391
iter 10 value 94.467391
final value 94.467391
converged
Fitting Repeat 1
# weights: 507
initial value 107.358414
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 97.070831
final value 94.305882
converged
Fitting Repeat 3
# weights: 507
initial value 96.671583
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 114.476125
final value 94.467391
converged
Fitting Repeat 5
# weights: 507
initial value 97.962030
final value 94.467391
converged
Fitting Repeat 1
# weights: 103
initial value 100.899133
iter 10 value 94.346494
iter 20 value 94.302215
iter 30 value 87.322213
iter 40 value 86.463196
iter 50 value 86.022336
iter 60 value 84.960821
iter 70 value 83.830120
iter 80 value 83.091266
iter 90 value 83.052859
iter 100 value 82.880057
final value 82.880057
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.932518
iter 10 value 94.441891
iter 20 value 90.788721
iter 30 value 89.489253
iter 40 value 88.697976
iter 50 value 88.169299
iter 60 value 87.925869
iter 70 value 86.874536
iter 80 value 84.855543
iter 90 value 83.324175
iter 100 value 83.151817
final value 83.151817
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.819874
iter 10 value 94.486800
iter 20 value 94.420533
iter 30 value 93.281847
iter 40 value 92.383466
iter 50 value 92.118874
iter 60 value 91.706410
iter 70 value 90.450962
iter 80 value 89.065366
iter 90 value 88.012720
iter 100 value 87.543907
final value 87.543907
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.210987
iter 10 value 94.476096
iter 20 value 94.143770
iter 30 value 94.138559
iter 40 value 90.151999
iter 50 value 88.117140
iter 60 value 87.293478
iter 70 value 86.041782
iter 80 value 85.731556
iter 90 value 85.673554
final value 85.673175
converged
Fitting Repeat 5
# weights: 103
initial value 97.440274
iter 10 value 93.598272
iter 20 value 89.259872
iter 30 value 87.622573
iter 40 value 85.572533
iter 50 value 85.124184
iter 60 value 84.877464
iter 70 value 84.713805
iter 80 value 84.007988
iter 90 value 83.188423
iter 100 value 83.001642
final value 83.001642
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.644462
iter 10 value 94.451730
iter 20 value 90.762527
iter 30 value 88.148428
iter 40 value 87.216665
iter 50 value 86.212707
iter 60 value 86.117938
iter 70 value 84.880179
iter 80 value 84.273320
iter 90 value 83.679140
iter 100 value 83.106942
final value 83.106942
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.980262
iter 10 value 94.522098
iter 20 value 94.332395
iter 30 value 93.304959
iter 40 value 92.598031
iter 50 value 87.796126
iter 60 value 87.056826
iter 70 value 86.202460
iter 80 value 85.832624
iter 90 value 84.001957
iter 100 value 83.293072
final value 83.293072
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.554737
iter 10 value 94.498252
iter 20 value 94.246680
iter 30 value 93.273922
iter 40 value 89.619280
iter 50 value 87.210658
iter 60 value 85.174151
iter 70 value 83.477599
iter 80 value 83.221638
iter 90 value 83.115890
iter 100 value 82.435726
final value 82.435726
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.210674
iter 10 value 94.738668
iter 20 value 94.488325
iter 30 value 89.792229
iter 40 value 88.271430
iter 50 value 87.342822
iter 60 value 86.359236
iter 70 value 85.831699
iter 80 value 85.570610
iter 90 value 85.452533
iter 100 value 85.405555
final value 85.405555
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 120.443261
iter 10 value 94.583751
iter 20 value 87.830852
iter 30 value 87.433541
iter 40 value 87.256469
iter 50 value 85.625340
iter 60 value 83.468288
iter 70 value 82.850088
iter 80 value 82.424377
iter 90 value 82.145121
iter 100 value 82.044929
final value 82.044929
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.632752
iter 10 value 94.903910
iter 20 value 93.755917
iter 30 value 89.033361
iter 40 value 86.310291
iter 50 value 83.686344
iter 60 value 83.316116
iter 70 value 82.938022
iter 80 value 82.457799
iter 90 value 81.517382
iter 100 value 81.279389
final value 81.279389
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.671495
iter 10 value 95.186768
iter 20 value 93.326991
iter 30 value 91.350595
iter 40 value 86.919435
iter 50 value 83.437790
iter 60 value 82.710217
iter 70 value 82.556595
iter 80 value 82.022569
iter 90 value 81.719010
iter 100 value 81.472155
final value 81.472155
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 135.058364
iter 10 value 95.060045
iter 20 value 89.842855
iter 30 value 87.163999
iter 40 value 85.385640
iter 50 value 85.044261
iter 60 value 84.332949
iter 70 value 82.777319
iter 80 value 82.171234
iter 90 value 81.860103
iter 100 value 81.841604
final value 81.841604
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.419661
iter 10 value 94.880341
iter 20 value 91.832355
iter 30 value 91.572432
iter 40 value 85.598781
iter 50 value 84.758487
iter 60 value 82.569514
iter 70 value 82.146030
iter 80 value 81.812670
iter 90 value 81.581815
iter 100 value 81.475206
final value 81.475206
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 129.112740
iter 10 value 96.332849
iter 20 value 94.215410
iter 30 value 88.491380
iter 40 value 87.203847
iter 50 value 85.973004
iter 60 value 84.360702
iter 70 value 84.269628
iter 80 value 83.688216
iter 90 value 83.510672
iter 100 value 83.205102
final value 83.205102
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.215533
final value 94.485972
converged
Fitting Repeat 2
# weights: 103
initial value 96.665800
final value 94.485609
converged
Fitting Repeat 3
# weights: 103
initial value 99.266561
final value 94.485788
converged
Fitting Repeat 4
# weights: 103
initial value 111.414022
final value 94.485663
converged
Fitting Repeat 5
# weights: 103
initial value 94.894264
final value 94.141031
converged
Fitting Repeat 1
# weights: 305
initial value 102.101227
iter 10 value 94.488801
iter 20 value 94.483255
iter 30 value 90.674749
iter 40 value 89.152558
iter 50 value 89.150278
iter 60 value 88.478239
final value 87.964235
converged
Fitting Repeat 2
# weights: 305
initial value 107.236171
iter 10 value 94.472284
iter 20 value 94.436630
iter 30 value 92.340900
iter 40 value 86.110892
iter 50 value 85.546454
iter 60 value 85.538732
iter 70 value 85.367816
iter 80 value 85.258172
iter 90 value 85.255414
iter 100 value 85.254720
final value 85.254720
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.563939
iter 10 value 94.489231
iter 20 value 94.107556
iter 30 value 94.091009
iter 40 value 94.065650
final value 94.065375
converged
Fitting Repeat 4
# weights: 305
initial value 108.924026
iter 10 value 94.472873
iter 20 value 94.468414
iter 30 value 94.348360
iter 40 value 94.144442
final value 94.135440
converged
Fitting Repeat 5
# weights: 305
initial value 126.974167
iter 10 value 94.472360
iter 20 value 94.170530
iter 30 value 86.758149
iter 40 value 86.067634
iter 50 value 84.616560
iter 60 value 84.177841
iter 70 value 84.176825
iter 80 value 84.175471
iter 90 value 83.097090
iter 100 value 81.523823
final value 81.523823
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 96.579215
iter 10 value 94.489913
iter 20 value 94.468174
iter 30 value 94.467747
final value 94.467585
converged
Fitting Repeat 2
# weights: 507
initial value 113.701280
iter 10 value 94.452216
iter 20 value 94.448524
iter 30 value 93.431584
iter 40 value 91.558316
iter 50 value 91.486359
iter 60 value 91.358539
iter 70 value 91.356276
iter 80 value 91.214573
iter 90 value 90.621988
iter 100 value 90.611359
final value 90.611359
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.707311
iter 10 value 94.475395
iter 20 value 94.467451
iter 30 value 94.410041
iter 40 value 91.992923
iter 50 value 88.383545
iter 60 value 84.104758
iter 70 value 82.676490
iter 80 value 82.665397
iter 90 value 82.648146
iter 100 value 82.226364
final value 82.226364
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.999700
iter 10 value 94.481747
iter 20 value 93.735770
iter 30 value 88.800199
iter 40 value 86.724992
iter 50 value 85.813287
iter 60 value 85.810820
iter 70 value 85.294549
iter 80 value 85.082561
iter 90 value 85.067233
iter 100 value 84.944675
final value 84.944675
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.288166
iter 10 value 94.278572
iter 20 value 94.036144
iter 30 value 94.030872
iter 40 value 92.850776
iter 50 value 87.205494
iter 60 value 86.031730
iter 70 value 85.949719
iter 80 value 85.948547
iter 90 value 85.865948
iter 100 value 85.318117
final value 85.318117
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 109.594995
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 103.373093
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.333487
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.897316
iter 10 value 92.590760
final value 92.515286
converged
Fitting Repeat 5
# weights: 103
initial value 97.517675
iter 10 value 92.945358
final value 92.945355
converged
Fitting Repeat 1
# weights: 305
initial value 98.075916
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 98.447236
iter 10 value 85.067568
iter 20 value 82.533752
iter 30 value 82.302473
iter 40 value 82.234685
iter 50 value 82.136865
final value 82.108314
converged
Fitting Repeat 3
# weights: 305
initial value 98.652672
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 98.467213
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 93.616675
iter 10 value 87.634877
final value 87.634077
converged
Fitting Repeat 1
# weights: 507
initial value 104.497485
final value 92.563129
converged
Fitting Repeat 2
# weights: 507
initial value 95.929433
iter 10 value 92.945454
final value 92.945355
converged
Fitting Repeat 3
# weights: 507
initial value 112.742120
iter 10 value 92.959555
iter 20 value 92.945415
final value 92.945356
converged
Fitting Repeat 4
# weights: 507
initial value 98.667451
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 103.186742
iter 10 value 88.845802
iter 20 value 82.900117
iter 30 value 80.854873
iter 40 value 80.803177
final value 80.799815
converged
Fitting Repeat 1
# weights: 103
initial value 104.201519
iter 10 value 93.230162
iter 20 value 91.598131
iter 30 value 87.518696
iter 40 value 87.244893
iter 50 value 86.510269
iter 60 value 83.680560
iter 70 value 82.984051
iter 80 value 82.910891
final value 82.907582
converged
Fitting Repeat 2
# weights: 103
initial value 103.702297
iter 10 value 93.378788
iter 20 value 88.904662
iter 30 value 85.969337
iter 40 value 85.817186
iter 50 value 82.948100
iter 60 value 82.675288
iter 70 value 81.884750
iter 80 value 81.475560
final value 81.472730
converged
Fitting Repeat 3
# weights: 103
initial value 102.527978
iter 10 value 93.964912
iter 20 value 89.722606
iter 30 value 85.420442
iter 40 value 84.438649
iter 50 value 83.351913
iter 60 value 82.944942
iter 70 value 82.907583
final value 82.907582
converged
Fitting Repeat 4
# weights: 103
initial value 96.918195
iter 10 value 93.875202
iter 20 value 87.769948
iter 30 value 86.568259
iter 40 value 84.521428
iter 50 value 83.587870
iter 60 value 83.529999
iter 70 value 83.373927
final value 83.369332
converged
Fitting Repeat 5
# weights: 103
initial value 102.826011
iter 10 value 93.735696
iter 20 value 92.856315
iter 30 value 92.827835
iter 40 value 91.572207
iter 50 value 85.645193
iter 60 value 85.204427
iter 70 value 84.514702
iter 80 value 81.365057
iter 90 value 81.271666
iter 100 value 81.247688
final value 81.247688
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 101.037523
iter 10 value 93.464161
iter 20 value 89.542719
iter 30 value 84.233736
iter 40 value 83.414494
iter 50 value 82.029596
iter 60 value 80.524693
iter 70 value 79.464136
iter 80 value 78.943152
iter 90 value 78.813929
iter 100 value 78.607947
final value 78.607947
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.374293
iter 10 value 94.116112
iter 20 value 93.683840
iter 30 value 92.944962
iter 40 value 88.441963
iter 50 value 85.917713
iter 60 value 85.074960
iter 70 value 81.568155
iter 80 value 80.055195
iter 90 value 79.555672
iter 100 value 79.399406
final value 79.399406
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.661978
iter 10 value 93.657245
iter 20 value 89.278146
iter 30 value 83.869183
iter 40 value 79.689796
iter 50 value 79.184469
iter 60 value 79.048954
iter 70 value 78.967820
iter 80 value 78.674802
iter 90 value 78.624610
iter 100 value 78.434568
final value 78.434568
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.340877
iter 10 value 93.230931
iter 20 value 88.589054
iter 30 value 85.745059
iter 40 value 84.943009
iter 50 value 81.322291
iter 60 value 80.656410
iter 70 value 79.232366
iter 80 value 78.582719
iter 90 value 78.147778
iter 100 value 77.993201
final value 77.993201
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.517593
iter 10 value 94.050290
iter 20 value 93.242728
iter 30 value 86.601566
iter 40 value 83.129594
iter 50 value 82.312057
iter 60 value 81.851710
iter 70 value 80.617806
iter 80 value 80.102466
iter 90 value 79.810142
iter 100 value 79.578334
final value 79.578334
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.103838
iter 10 value 94.070902
iter 20 value 85.254344
iter 30 value 83.844697
iter 40 value 81.964885
iter 50 value 80.331859
iter 60 value 79.985320
iter 70 value 79.775994
iter 80 value 79.523119
iter 90 value 79.292653
iter 100 value 79.083236
final value 79.083236
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 132.958571
iter 10 value 94.446540
iter 20 value 89.263993
iter 30 value 87.258766
iter 40 value 83.038934
iter 50 value 81.233932
iter 60 value 79.130608
iter 70 value 78.949980
iter 80 value 78.751254
iter 90 value 78.547775
iter 100 value 78.339194
final value 78.339194
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.423942
iter 10 value 93.120676
iter 20 value 92.166945
iter 30 value 87.691540
iter 40 value 85.330038
iter 50 value 84.410220
iter 60 value 81.320407
iter 70 value 79.824162
iter 80 value 78.718629
iter 90 value 78.128610
iter 100 value 77.849137
final value 77.849137
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.209868
iter 10 value 93.445920
iter 20 value 91.728059
iter 30 value 82.906958
iter 40 value 81.655132
iter 50 value 81.265972
iter 60 value 80.021665
iter 70 value 79.288471
iter 80 value 79.140448
iter 90 value 78.773618
iter 100 value 78.635992
final value 78.635992
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.212576
iter 10 value 92.332760
iter 20 value 84.702956
iter 30 value 83.879471
iter 40 value 83.656463
iter 50 value 81.962624
iter 60 value 81.330894
iter 70 value 80.738325
iter 80 value 80.032825
iter 90 value 79.589995
iter 100 value 78.939882
final value 78.939882
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.936852
final value 93.630077
converged
Fitting Repeat 2
# weights: 103
initial value 95.057963
iter 10 value 94.054325
iter 20 value 94.018528
iter 30 value 94.017512
iter 40 value 92.201417
iter 50 value 89.325136
final value 89.257667
converged
Fitting Repeat 3
# weights: 103
initial value 95.734224
final value 94.054437
converged
Fitting Repeat 4
# weights: 103
initial value 94.402944
final value 94.054446
converged
Fitting Repeat 5
# weights: 103
initial value 97.346921
final value 94.054636
converged
Fitting Repeat 1
# weights: 305
initial value 99.033865
iter 10 value 94.057864
iter 20 value 94.047633
iter 30 value 92.946963
final value 92.946955
converged
Fitting Repeat 2
# weights: 305
initial value 95.142733
iter 10 value 94.057999
iter 20 value 93.949205
iter 30 value 92.371722
iter 40 value 83.657396
iter 50 value 83.637233
iter 60 value 83.517030
iter 70 value 82.805730
iter 80 value 82.801647
iter 90 value 82.798843
iter 100 value 82.783701
final value 82.783701
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.863311
iter 10 value 92.576943
iter 20 value 92.576563
iter 30 value 92.318199
iter 40 value 89.999466
iter 50 value 89.986530
final value 89.985460
converged
Fitting Repeat 4
# weights: 305
initial value 112.476007
iter 10 value 92.567535
iter 20 value 92.535839
iter 30 value 92.533674
iter 40 value 92.530280
final value 92.530269
converged
Fitting Repeat 5
# weights: 305
initial value 99.236353
iter 10 value 94.057768
iter 20 value 93.669608
iter 30 value 84.752516
iter 40 value 83.388985
iter 50 value 80.818282
iter 60 value 80.277503
iter 70 value 80.222377
iter 80 value 80.193752
iter 90 value 80.192571
final value 80.192176
converged
Fitting Repeat 1
# weights: 507
initial value 96.937363
iter 10 value 92.873019
iter 20 value 92.527416
iter 30 value 92.525426
iter 40 value 90.113001
iter 50 value 89.103155
iter 60 value 83.800441
iter 70 value 79.649490
iter 80 value 79.160780
iter 90 value 78.791001
iter 100 value 77.861195
final value 77.861195
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.408428
iter 10 value 94.070166
iter 20 value 93.922601
iter 30 value 92.956624
iter 40 value 92.952571
iter 50 value 88.917522
iter 60 value 88.841550
iter 70 value 86.510962
iter 80 value 84.392172
iter 90 value 84.201650
iter 100 value 84.200848
final value 84.200848
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.303597
iter 10 value 94.061019
iter 20 value 94.022878
iter 30 value 93.732233
iter 40 value 85.358150
iter 50 value 82.983317
iter 60 value 82.238117
iter 70 value 82.201018
iter 80 value 82.093516
iter 90 value 81.288930
iter 100 value 80.904212
final value 80.904212
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.719164
iter 10 value 94.061197
iter 20 value 94.041853
iter 30 value 85.062245
iter 40 value 84.896108
iter 50 value 84.841239
iter 60 value 84.104952
iter 70 value 84.103227
iter 80 value 84.102461
iter 90 value 82.451824
iter 100 value 81.696828
final value 81.696828
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 96.250629
iter 10 value 83.095053
iter 20 value 81.965322
iter 30 value 80.921744
iter 40 value 80.916308
iter 40 value 80.916308
final value 80.916308
converged
Fitting Repeat 1
# weights: 103
initial value 104.519885
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 101.956102
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.304977
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.022463
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.357452
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.722977
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 98.005676
final value 94.466823
converged
Fitting Repeat 3
# weights: 305
initial value 107.297475
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 101.787707
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 117.096600
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 97.907396
iter 10 value 91.657957
iter 20 value 83.036323
iter 30 value 81.783097
iter 40 value 81.164438
iter 50 value 81.146210
iter 60 value 80.937690
iter 70 value 80.819776
iter 80 value 80.818978
final value 80.818510
converged
Fitting Repeat 2
# weights: 507
initial value 125.853577
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 139.779332
iter 10 value 94.466823
iter 10 value 94.466823
iter 10 value 94.466823
final value 94.466823
converged
Fitting Repeat 4
# weights: 507
initial value 101.426814
final value 94.466823
converged
Fitting Repeat 5
# weights: 507
initial value 102.267281
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.739082
iter 10 value 94.488857
iter 20 value 94.456296
iter 30 value 93.462774
iter 40 value 87.073007
iter 50 value 85.606907
iter 60 value 84.786392
iter 70 value 84.763754
iter 80 value 84.719635
final value 84.718987
converged
Fitting Repeat 2
# weights: 103
initial value 99.925869
iter 10 value 94.490665
iter 20 value 94.488572
iter 30 value 94.461889
iter 40 value 93.218887
iter 50 value 92.516132
iter 60 value 92.086002
iter 70 value 85.387023
iter 80 value 85.175733
iter 90 value 84.917051
iter 100 value 84.807415
final value 84.807415
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.499464
iter 10 value 94.109063
iter 20 value 92.732404
iter 30 value 92.180135
iter 40 value 87.558096
iter 50 value 85.195003
iter 60 value 85.143544
iter 70 value 85.072515
iter 80 value 84.772542
iter 90 value 84.753641
iter 100 value 84.737904
final value 84.737904
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.296348
iter 10 value 94.453659
iter 20 value 88.806551
iter 30 value 87.470411
iter 40 value 87.117284
iter 50 value 87.050087
iter 60 value 85.190863
iter 70 value 84.868680
iter 80 value 84.766517
iter 90 value 84.724525
final value 84.724457
converged
Fitting Repeat 5
# weights: 103
initial value 108.280685
iter 10 value 94.406216
iter 20 value 92.786751
iter 30 value 92.145328
iter 40 value 91.975235
iter 50 value 91.972153
final value 91.972130
converged
Fitting Repeat 1
# weights: 305
initial value 101.338330
iter 10 value 90.635179
iter 20 value 86.400280
iter 30 value 85.027554
iter 40 value 84.378596
iter 50 value 83.593112
iter 60 value 82.577094
iter 70 value 82.420103
iter 80 value 82.305716
iter 90 value 82.276775
iter 100 value 82.057841
final value 82.057841
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 116.723045
iter 10 value 94.615523
iter 20 value 94.325409
iter 30 value 94.304852
iter 40 value 94.189407
iter 50 value 93.248624
iter 60 value 91.626523
iter 70 value 90.789128
iter 80 value 86.586812
iter 90 value 85.690894
iter 100 value 83.762817
final value 83.762817
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.179933
iter 10 value 94.614767
iter 20 value 87.704765
iter 30 value 86.835896
iter 40 value 84.783998
iter 50 value 84.652197
iter 60 value 84.431398
iter 70 value 84.344451
iter 80 value 84.321757
iter 90 value 83.936186
iter 100 value 82.812292
final value 82.812292
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.185195
iter 10 value 94.171248
iter 20 value 85.616247
iter 30 value 85.170010
iter 40 value 84.871440
iter 50 value 84.768518
iter 60 value 84.689396
iter 70 value 84.052255
iter 80 value 82.943222
iter 90 value 82.184417
iter 100 value 81.521459
final value 81.521459
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.052317
iter 10 value 94.179456
iter 20 value 92.918859
iter 30 value 92.594705
iter 40 value 85.735175
iter 50 value 84.252648
iter 60 value 82.895609
iter 70 value 82.531941
iter 80 value 82.267864
iter 90 value 82.250007
iter 100 value 82.205500
final value 82.205500
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 117.489123
iter 10 value 94.530884
iter 20 value 88.334881
iter 30 value 87.950748
iter 40 value 85.578120
iter 50 value 83.446226
iter 60 value 82.461171
iter 70 value 82.081228
iter 80 value 81.941811
iter 90 value 81.842105
iter 100 value 81.738695
final value 81.738695
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 121.963511
iter 10 value 94.471434
iter 20 value 90.164771
iter 30 value 86.876624
iter 40 value 86.213531
iter 50 value 85.135805
iter 60 value 83.665342
iter 70 value 82.126936
iter 80 value 81.852000
iter 90 value 81.518625
iter 100 value 81.379036
final value 81.379036
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.503957
iter 10 value 94.305375
iter 20 value 89.553325
iter 30 value 85.502694
iter 40 value 84.972698
iter 50 value 83.927240
iter 60 value 83.120604
iter 70 value 82.154742
iter 80 value 81.969064
iter 90 value 81.732380
iter 100 value 81.563682
final value 81.563682
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.686324
iter 10 value 93.216127
iter 20 value 92.656820
iter 30 value 91.236677
iter 40 value 88.336390
iter 50 value 85.174900
iter 60 value 84.856363
iter 70 value 83.456165
iter 80 value 82.597348
iter 90 value 82.232745
iter 100 value 81.990284
final value 81.990284
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.933129
iter 10 value 94.670216
iter 20 value 94.492471
iter 30 value 94.421170
iter 40 value 87.987181
iter 50 value 86.559120
iter 60 value 84.977577
iter 70 value 83.651924
iter 80 value 82.525450
iter 90 value 82.201179
iter 100 value 81.901331
final value 81.901331
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.234705
final value 94.485973
converged
Fitting Repeat 2
# weights: 103
initial value 97.463025
final value 94.485932
converged
Fitting Repeat 3
# weights: 103
initial value 99.485595
final value 94.485827
converged
Fitting Repeat 4
# weights: 103
initial value 101.425911
final value 94.485770
converged
Fitting Repeat 5
# weights: 103
initial value 95.121795
final value 94.485705
converged
Fitting Repeat 1
# weights: 305
initial value 97.779551
iter 10 value 94.489092
iter 20 value 94.483890
iter 30 value 86.344286
iter 40 value 86.324758
iter 50 value 84.449630
iter 60 value 84.333192
iter 70 value 84.320385
iter 80 value 84.320115
final value 84.319976
converged
Fitting Repeat 2
# weights: 305
initial value 118.703147
iter 10 value 94.489022
iter 20 value 94.484509
iter 30 value 94.334965
iter 40 value 86.461077
iter 50 value 86.310355
final value 86.309547
converged
Fitting Repeat 3
# weights: 305
initial value 106.528506
iter 10 value 94.445133
iter 20 value 93.586679
iter 30 value 86.319302
iter 40 value 86.268874
iter 50 value 85.467923
iter 60 value 85.467600
iter 70 value 85.465323
iter 70 value 85.465323
iter 70 value 85.465323
final value 85.465323
converged
Fitting Repeat 4
# weights: 305
initial value 98.538006
iter 10 value 94.471314
iter 20 value 94.427028
iter 30 value 88.503738
iter 40 value 87.552232
final value 87.551168
converged
Fitting Repeat 5
# weights: 305
initial value 108.610407
iter 10 value 94.489077
iter 20 value 94.484421
final value 94.484229
converged
Fitting Repeat 1
# weights: 507
initial value 103.298592
iter 10 value 94.475255
iter 20 value 94.457349
iter 30 value 94.099658
iter 40 value 94.095573
iter 50 value 94.010181
iter 60 value 93.797926
iter 70 value 93.697736
final value 93.697731
converged
Fitting Repeat 2
# weights: 507
initial value 114.083669
iter 10 value 94.492278
iter 20 value 93.682292
iter 30 value 92.633895
iter 40 value 92.632532
iter 50 value 92.631258
iter 60 value 92.631030
iter 70 value 92.629923
iter 80 value 92.629452
final value 92.629371
converged
Fitting Repeat 3
# weights: 507
initial value 106.365082
iter 10 value 94.492360
iter 20 value 94.449526
iter 30 value 86.536788
iter 40 value 86.510708
iter 50 value 84.521300
iter 60 value 84.360694
iter 70 value 84.329551
iter 80 value 84.325415
iter 90 value 84.315896
iter 100 value 84.313852
final value 84.313852
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.091594
iter 10 value 94.491535
iter 20 value 94.474770
iter 30 value 86.311035
final value 86.310504
converged
Fitting Repeat 5
# weights: 507
initial value 128.925413
iter 10 value 94.494208
iter 20 value 94.180627
iter 30 value 84.399607
iter 40 value 84.336390
iter 50 value 83.202323
iter 60 value 83.035160
iter 70 value 82.937954
iter 80 value 82.937046
iter 90 value 82.872209
iter 100 value 82.837672
final value 82.837672
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 141.130028
iter 10 value 117.763574
iter 20 value 117.759643
iter 30 value 117.564502
iter 40 value 117.282063
iter 50 value 114.249990
iter 60 value 114.036756
iter 70 value 114.032249
iter 80 value 114.019319
final value 114.019088
converged
Fitting Repeat 2
# weights: 305
initial value 132.581334
iter 10 value 117.893796
final value 117.892059
converged
Fitting Repeat 3
# weights: 305
initial value 133.420982
iter 10 value 117.895784
iter 20 value 117.881178
iter 30 value 107.057848
iter 40 value 106.778886
iter 40 value 106.778886
final value 106.778886
converged
Fitting Repeat 4
# weights: 305
initial value 121.743096
iter 10 value 117.774870
iter 20 value 117.733224
iter 30 value 117.730423
iter 40 value 109.640676
iter 50 value 106.984719
iter 60 value 106.957871
iter 70 value 105.273013
iter 80 value 105.097998
iter 90 value 105.052383
iter 100 value 105.043906
final value 105.043906
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 132.946651
iter 10 value 117.895636
iter 20 value 117.890432
iter 30 value 117.749630
iter 40 value 108.546554
iter 50 value 108.530803
final value 108.528145
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue May 5 11:16:25 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
53.940 1.490 135.766
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 32.988 | 0.423 | 33.472 | |
| FreqInteractors | 0.607 | 0.020 | 0.630 | |
| calculateAAC | 0.045 | 0.000 | 0.046 | |
| calculateAutocor | 0.622 | 0.020 | 0.646 | |
| calculateCTDC | 0.085 | 0.004 | 0.089 | |
| calculateCTDD | 0.726 | 0.000 | 0.729 | |
| calculateCTDT | 0.248 | 0.000 | 0.249 | |
| calculateCTriad | 0.417 | 0.004 | 0.422 | |
| calculateDC | 0.123 | 0.000 | 0.123 | |
| calculateF | 0.446 | 0.000 | 0.447 | |
| calculateKSAAP | 0.144 | 0.000 | 0.145 | |
| calculateQD_Sm | 2.219 | 0.016 | 2.240 | |
| calculateTC | 2.206 | 0.032 | 2.243 | |
| calculateTC_Sm | 0.310 | 0.000 | 0.311 | |
| corr_plot | 34.849 | 0.152 | 35.073 | |
| enrichfindP | 0.530 | 0.032 | 25.077 | |
| enrichfind_hp | 0.052 | 0.004 | 1.369 | |
| enrichplot | 0.703 | 0.004 | 0.709 | |
| filter_missing_values | 0.002 | 0.000 | 0.001 | |
| getFASTA | 0.080 | 0.000 | 6.094 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.000 | 0.002 | |
| plotPPI | 0.104 | 0.000 | 0.104 | |
| pred_ensembel | 17.412 | 0.164 | 16.390 | |
| var_imp | 33.667 | 0.369 | 34.201 | |