Mustafa Erhan Ozer
| Snapshot Date: 2025-03-17 13:40 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-18 11:45 -0400 (Tue, 18 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4537 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4543 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2113/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-03-18 00:06:54 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 00:12:31 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 336.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGUI 0.895 0.043 7.428
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 10965,2328,6261,9997,284184,55902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1509,3759,2052,65080,6390,54805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,92667,5350,488,5194,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5350,201595,80201,2200,316,2587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51092,1027,1594,2064,84902,6383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6929,2998,54982,94235,8050,1769
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9415,1312,27249,4089,2689,6389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4351,5019,4548,7879,140803,644974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 706,3569,1738,25821,4288,9409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3030,29968,64689,231,4069,2690
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2745,79934,388743,5741,9945,2100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4982,7048,558,79644,15,22852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,6890,26175,3651,162417,2639
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,3034,203068,5970,7841,5306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10999,3115,5601,10316,2588,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406947,27247,56919,1351,4860,6403
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9332,356,847,9104,10667,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,123283,56652,26517,123099,55278
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130120,7052,7124,7276,8675,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4712,3284,1544,55630,7386,7355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5826,847,10642,2064,3791,4128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 18,64432,3920,1175,29078,2588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,125170,51079,5824,656,9095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2348,5188,2717,169026,2683,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3684,3576,8862,5175,3034,5270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2788,4598,8567,3949,63874,1080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 411,3939,6888,496,5617,7292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7274,2584,6319,3383,341,4712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54148,627,57085,4723,1583,6392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64601,5498,3945,5264,6522,5824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406982,8660,5080,79053,6901,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9104,3553,91949,9672,5599,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 336,5241,60528,9076,10352,11131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,57817,28958,7297,4049,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116150,7287,10008,2159,4718,7431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388372,84334,836,26235,9409,55532
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6182,29880,558,5730,2314,6439
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406,23175,1200,3172,10667,10935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1373,22820,2310,1337,83854,5563
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,55902,1244,585,1859,2876
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,6554,8202,51021,1175,84902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57620,796,1499,5054,3988,3145
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1558,868,284958,91647,153642,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,594,7048,3663,6566,6569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7409,7248,3980,3651,6445,7347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,155,35,27010,7385,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9180,4311,10599,189,37,6263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4704,63874,104,2064,7319,8567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,81570,51660,5191,51083,706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197131,9409,498,3596,3636,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,200205,5250,4627,4886,6009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7384,4968,7026,4233,114548,64788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,1443,886,10935,2571,409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 476,3486,210,79158,388753,5825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22978,1029,517,25813,5473,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,56922,325,6775,23054,55343
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10102,22868,3980,5442,8714,496
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79572,3692,3576,3242,2948,2101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 153,537,2053,178,9919,3930
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,1608,85476,1312,130589,51478
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6928,57128,5250,8660,48,4846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1497,2952,23600,644974,2517,5255
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54106,7124,10842,35,27125,353500
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5139,10999,5744,5192,150,3712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,6522,7295,7098,2688,3425
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 175,3875,6565,56729,4609,255308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5741,79144,374291,56623,2937,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 664,2030,5625,84833,477,2693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4705,23516,137994,6515,100128525,9559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57215,941,31,7057,6505,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11019,819,6891,7376,51004,19
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51608,6198,9692,5321,11035,4697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3978,84987,4654,84557,22978,8504
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3283,518,1075,64087,5069,201595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23530,3156,54902,4719,388753,1369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9021,8462,9927,644974,64900,2984
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2572,1373,80224,51082,3081,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1591,55186,51555,4899,1843,2146
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285126,27247,26191,5465,2328,6775
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83884,64116,9131,27125,51649,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51119,10423,158,10841,38,7385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54901,5465,210,3170,26175,191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6564,124976,5214,1608,201305,6439
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7132,5052,350,7274,23410,10229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3480,50674,27249,51085,407011,326625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7054,5442,10753,2119,1027,79731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389692,1352,9388,4684,53346,7036
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,599,1312,3988,5052,3600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,3250,6341,664,5621,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,9409,1718,3552,54578,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100130015,1186,5367,3479,3082,54931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3783,3938,10008,2799,3598,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 32,3559,4973,407009,5617,6517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,6403,5447,293,2762,1490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22845,48,4285,793,79731,8471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6929,4282,7056,3240,54106,51422
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,6775,388743,64689,6721,3565
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5313,84275,7098,4144,1401,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5825,3992,285848,367,6439,51601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1728,183,6403,9927,5730,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 19,58528,84447,6571,1373,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 330,2693,5194,4853,2643,5078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4982,3054,1807,5498,517,6897
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4713,275,18,4889,1950,1813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,4828,1906,706,27010,7389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,10730,6374,54806,7466,8722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81570,5346,3290,23129,4967,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,147007,1581,80201,138050,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51649,6342,5345,92609,53345,801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4012,53346,23600,347,126328,51293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 208,2641,6938,123099,63874,54578
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,388372,4282,6248,81033,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8854,149775,1583,8862,8431,824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,160428,3586,3357,7879,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90624,7498,3953,3283,517,4716
--> return NULL...
2025-03-18 00:12:22.317 R[28617:432357808] XType: com.apple.fonts is not accessible.
2025-03-18 00:12:22.317 R[28617:432357808] XType: XTFontStaticRegistry is enabled.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
63.425 1.381 65.479
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.895 | 0.043 | 7.428 | |