Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4777
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4545
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4576
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4528
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4458
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on kjohnson3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-03-19 18:26:29 -0400 (Wed, 19 Mar 2025)

EndedAt: 2025-03-19 18:26:51 -0400 (Wed, 19 Mar 2025)

EllapsedTime: 21.3 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.13.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-19 18:26:44.320][biodb::testContext]
biodb.INFO [2025-03-19 18:26:44.321][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:44.322][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-19 18:26:44.322][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:44.322][biodb::testContext]
biodb.INFO [2025-03-19 18:26:44.323][biodb::testThat]
biodb.INFO [2025-03-19 18:26:44.323][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-19 18:26:44.323][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:44.324][biodb::testThat]
biodb.INFO [2025-03-19 18:26:44.362][biodb::testContext]
biodb.INFO [2025-03-19 18:26:44.363][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:44.363][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-19 18:26:44.363][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:44.364][biodb::testContext]
biodb.INFO [2025-03-19 18:26:44.367][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-19 18:26:44.368][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-19 18:26:44.371][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:44.372][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-19 18:26:44.372][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-19 18:26:44.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.373][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-19 18:26:44.382][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-19 18:26:44.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.383][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-19 18:26:44.384][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-19 18:26:44.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.384][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-19 18:26:44.385][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-19 18:26:44.385][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-19 18:26:44.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.386][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-19 18:26:44.386][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-19 18:26:44.386][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-19 18:26:44.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.387][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-19 18:26:44.388][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-19 18:26:44.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.389][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-19 18:26:44.389][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-19 18:26:44.389][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-19 18:26:44.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.390][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-19 18:26:44.390][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-19 18:26:44.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.391][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-19 18:26:44.391][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-19 18:26:44.392][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-19 18:26:44.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.393][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-19 18:26:44.393][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-19 18:26:44.393][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-19 18:26:44.393][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-19 18:26:44.394][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-19 18:26:44.394][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-19 18:26:44.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.395][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-19 18:26:44.395][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-19 18:26:44.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.396][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-19 18:26:44.396][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-19 18:26:44.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.397][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-19 18:26:44.397][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-19 18:26:44.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.398][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-19 18:26:44.398][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-19 18:26:44.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.399][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-19 18:26:44.400][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-19 18:26:44.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.400][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-19 18:26:44.401][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-19 18:26:44.407][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-19 18:26:44.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.408][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-19 18:26:44.408][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-19 18:26:44.408][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-19 18:26:44.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.410][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-19 18:26:44.421][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.426][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-19 18:26:44.426][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.427][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:44.427][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.427][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.427][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.428][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.428][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 18:26:44.428][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:44.429][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.429][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-19 18:26:44.429][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:44.429][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:44.430][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.431][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.431][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:44.431][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.431][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.432][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.432][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.435][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:44.435][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:44.435][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.435][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.436][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-19 18:26:44.436][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.437][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 18:26:44.437][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.437][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:44.437][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.438][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.438][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.438][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.438][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 18:26:44.439][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:44.439][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.439][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-19 18:26:44.439][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 18:26:44.440][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:44.441][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.441][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.441][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:44.441][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.442][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.442][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.442][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.442][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:44.443][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:44.443][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.443][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.443][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-19 18:26:44.444][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.444][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-19 18:26:44.444][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.445][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:44.445][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.445][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.445][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.446][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.446][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 18:26:44.446][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:44.446][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.447][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-19 18:26:44.447][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:44.447][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.447][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.448][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.448][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:44.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.448][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.449][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:44.449][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.449][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.450][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.450][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:44.450][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:44.450][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.451][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.451][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-19 18:26:44.451][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.452][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 18:26:44.452][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.452][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:44.452][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.453][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.453][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.453][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.453][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 18:26:44.454][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:44.454][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.454][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-19 18:26:44.454][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:44.455][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.455][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.455][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.455][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:44.455][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.456][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:44.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.456][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.457][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.457][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.457][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:44.457][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:44.458][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.458][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.459][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:44.460][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.479][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-19 18:26:44.484][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-19 18:26:44.484][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-19 18:26:44.485][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-19 18:26:44.485][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-19 18:26:44.485][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 18:26:44.486][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-19 18:26:44.486][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-19 18:26:44.486][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-19 18:26:44.487][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 18:26:44.487][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 18:26:44.488][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-19 18:26:44.488][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-19 18:26:44.488][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-19 18:26:44.489][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-19 18:26:44.489][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 18:26:44.489][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-19 18:26:44.490][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-19 18:26:44.490][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-19 18:26:44.490][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-19 18:26:44.491][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-19 18:26:44.491][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-19 18:26:44.491][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-19 18:26:44.492][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-19 18:26:44.492][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-19 18:26:44.493][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-19 18:26:44.493][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-19 18:26:44.493][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-19 18:26:44.494][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-19 18:26:44.494][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-19 18:26:44.494][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-19 18:26:44.495][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-19 18:26:44.495][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-19 18:26:44.495][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-19 18:26:44.496][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-19 18:26:44.496][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-19 18:26:44.497][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-19 18:26:44.497][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-19 18:26:44.497][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-19 18:26:44.498][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-19 18:26:44.498][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-19 18:26:44.498][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-19 18:26:44.499][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-19 18:26:44.499][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-19 18:26:44.499][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-19 18:26:44.500][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-19 18:26:44.500][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-19 18:26:44.500][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-19 18:26:44.501][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-19 18:26:44.501][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-19 18:26:44.502][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-19 18:26:44.502][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-19 18:26:44.502][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-19 18:26:44.503][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-19 18:26:44.503][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-19 18:26:44.503][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-19 18:26:44.504][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-19 18:26:44.504][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-19 18:26:44.504][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-19 18:26:44.505][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-19 18:26:44.505][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-19 18:26:44.505][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-19 18:26:44.506][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-19 18:26:44.506][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-19 18:26:44.507][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-19 18:26:44.507][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-19 18:26:44.507][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-19 18:26:44.508][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-19 18:26:44.508][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-19 18:26:44.508][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-19 18:26:44.509][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-19 18:26:44.509][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-19 18:26:44.509][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-19 18:26:44.510][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-19 18:26:44.510][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-19 18:26:44.511][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-19 18:26:44.511][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-19 18:26:44.511][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-19 18:26:44.512][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-19 18:26:44.512][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-19 18:26:44.512][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-19 18:26:44.513][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-19 18:26:44.513][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-19 18:26:44.516][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-19 18:26:44.516][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-19 18:26:44.518][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:44.518][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.518][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:44.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:44.561][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-19 18:26:44.565][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:44.565][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.565][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.566][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.566][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:44.566][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.567][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-19 18:26:44.567][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.567][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.567][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-19 18:26:44.568][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:44.568][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.568][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-19 18:26:44.568][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-19 18:26:44.569][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-19 18:26:44.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.570][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.570][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:44.570][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:44.571][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:44.571][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:44.571][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 18:26:44.571][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-19 18:26:44.571][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:44.572][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:44.572][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:44.572][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:44.574][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-19 18:26:44.574][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 18:26:44.575][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 18:26:44.576][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 18:26:44.576][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 18:26:44.586][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:44.587][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-19 18:26:44.588][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:44.590][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:44.592][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:44.592][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:44.593][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-19 18:26:44.593][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-19 18:26:44.593][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 18:26:44.593][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-19 18:26:44.593][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:44.594][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:44.594][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-19 18:26:44.594][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-19 18:26:44.595][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:44.604][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:44.604][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:44.605][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:44.605][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:44.606][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:44.606][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-19 18:26:44.610][biodb::testThat]
biodb.INFO [2025-03-19 18:26:44.610][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-19 18:26:44.610][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:44.611][biodb::testThat]
biodb.TRACE[2025-03-19 18:26:44.612][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-19 18:26:44.613][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 18:26:44.614][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 18:26:44.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:44.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:44.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:44.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:44.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:44.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:44.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:44.626][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.626][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.632][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.633][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.633][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.643][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.643][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.643][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.645][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.645][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.646][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.648][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.649][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.649][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.650][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.652][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.657][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.659][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.659][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.659][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.661][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.662][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.663][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.666][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.668][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.670][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.671][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.672][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.673][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.674][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.676][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.676][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.678][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:44.678][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.678][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.695][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.696][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.719][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.720][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.732][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.747][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.751][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.768][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:44.780][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-19 18:26:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 18:26:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 18:26:44.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 18:26:44.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 18:26:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-19 18:26:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-19 18:26:44.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-19 18:26:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-19 18:26:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.793][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.803][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.803][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.810][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.811][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.819][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.820][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.820][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.820][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.827][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.827][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.828][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.834][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.835][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.841][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.848][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.858][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.865][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.866][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.866][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.866][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.873][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.874][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.880][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.880][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.881][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.887][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.888][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.894][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.894][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.903][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.904][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.910][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.911][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.911][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.918][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.925][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.933][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.941][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.942][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.942][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.943][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.943][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:44.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:44.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.947][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.948][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.949][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:44.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.949][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.951][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.951][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:44.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.951][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:44.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.953][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.955][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.955][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:44.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.955][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.957][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.957][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:44.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.957][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.959][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.959][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.959][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.961][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.961][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:44.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.962][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.963][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:44.963][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:44.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.964][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.965][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:44.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:44.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.966][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:44.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:44.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.968][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.970][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:44.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.972][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.973][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:44.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.974][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:44.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:44.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.978][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:44.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.981][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.982][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.982][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:44.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.983][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:44.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:44.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:44.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:44.985][ef$get] fields variable is a list.
biodb.INFO [2025-03-19 18:26:44.988][biodb::testThat]
biodb.INFO [2025-03-19 18:26:44.988][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-19 18:26:44.988][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:44.988][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:44.993][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-19 18:26:44.995][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 18:26:44.997][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:44.997][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 18:26:44.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 18:26:44.998][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 18:26:44.999][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-19 18:26:44.999][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 18:26:45.006][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 18:26:45.006][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 18:26:45.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:45.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:45.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:45.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:45.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:45.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:45.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:45.011][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.012][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.013][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.013][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.014][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.014][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.015][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.015][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.016][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.016][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.017][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.017][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.018][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.022][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.023][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.024][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.024][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.025][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.026][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.026][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.028][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.029][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.030][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.030][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.032][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.032][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.032][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.034][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:45.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:45.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.034][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:45.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.036][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:45.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:45.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.037][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:45.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.038][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.042][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.042][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.043][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.044][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.044][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.045][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:45.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:45.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.047][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:45.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.048][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:45.049][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.049][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.049][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:45.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.054][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:45.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:45.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:45.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:45.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:45.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.128][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-19 18:26:45.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-19 18:26:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-19 18:26:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-19 18:26:45.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-19 18:26:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-19 18:26:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-19 18:26:45.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-19 18:26:45.134][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.134][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-19 18:26:45.135][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:45.135][biodb::testThat]
biodb.TRACE[2025-03-19 18:26:45.136][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.137][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.137][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-19 18:26:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.149][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-19 18:26:45.149][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-19 18:26:45.149][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 18:26:45.150][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 18:26:45.150][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.151][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.151][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:45.151][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.152][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:45.152][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:45.152][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:45.153][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:45.153][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:45.153][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 18:26:45.153][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 18:26:45.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.158][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:45.158][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 18:26:45.158][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 18:26:45.162][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.163][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.163][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.164][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-19 18:26:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.171][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.174][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-19 18:26:45.190][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 18:26:45.190][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-19 18:26:45.191][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-19 18:26:45.195][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.195][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.196][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:45.196][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.197][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:45.201][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:45.204][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:45.204][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:45.204][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:45.205][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 18:26:45.205][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 18:26:45.205][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:45.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:45.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.210][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:45.210][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 18:26:45.210][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 18:26:45.215][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.215][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.215][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.216][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-19 18:26:45.220][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.224][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-19 18:26:45.224][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-19 18:26:45.224][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-19 18:26:45.225][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-19 18:26:45.225][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.226][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.226][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:45.226][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.227][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:45.227][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:45.227][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:45.228][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:45.228][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:45.228][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 18:26:45.228][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 18:26:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.230][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.233][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:45.233][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 18:26:45.234][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-19 18:26:45.239][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.239][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-19 18:26:45.239][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:45.240][biodb::testThat]
biodb.TRACE[2025-03-19 18:26:45.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.253][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-19 18:26:45.253][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 18:26:45.253][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 18:26:45.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.255][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:45.255][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:45.255][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:45.256][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:45.256][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:45.256][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:45.256][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:45.257][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 18:26:45.257][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 18:26:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:45.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:45.262][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:45.262][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-19 18:26:45.267][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.268][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-19 18:26:45.268][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:45.268][biodb::testThat]
biodb.TRACE[2025-03-19 18:26:45.275][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-19 18:26:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-19 18:26:45.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-19 18:26:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-19 18:26:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 18:26:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-19 18:26:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-19 18:26:45.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-19 18:26:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-19 18:26:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:45.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-19 18:26:45.302][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.302][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-19 18:26:45.303][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:45.303][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.306][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.306][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-19 18:26:45.306][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:45.307][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.309][biodb::testThat]
biodb.INFO [2025-03-19 18:26:45.309][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-19 18:26:45.310][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:45.310][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:45.311][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-19 18:26:46.894][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-19 18:26:46.932][biodb::testThat]
biodb.INFO [2025-03-19 18:26:46.933][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-19 18:26:46.933][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:46.933][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.209][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-19 18:26:47.246][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.247][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.247][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.248][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.248][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.248][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.249][ef$get] fields variable is a list.
biodb.INFO [2025-03-19 18:26:47.249][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.250][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-03-19 18:26:47.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.250][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.251][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-19 18:26:47.269][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 18:26:47.270][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.271][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 18:26:47.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-19 18:26:47.276][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-19 18:26:47.276][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-19 18:26:47.277][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 18:26:47.277][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.277][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 18:26:47.278][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 18:26:47.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:47.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:47.282][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.283][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:47.304][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-19 18:26:47.304][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-19 18:26:47.310][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.311][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-19 18:26:47.311][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.311][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.314][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-19 18:26:47.315][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-19 18:26:47.315][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 18:26:47.316][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.316][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 18:26:47.317][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-19 18:26:47.317][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-19 18:26:47.317][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-19 18:26:47.318][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 18:26:47.318][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.318][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 18:26:47.319][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 18:26:47.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:47.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:47.332][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-19 18:26:47.332][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-19 18:26:47.332][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-19 18:26:47.337][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.337][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-03-19 18:26:47.338][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.340][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.348][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.348][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-03-19 18:26:47.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.348][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.349][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.350][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.350][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:47.350][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.351][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:47.351][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:47.351][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:47.352][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:47.352][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-19 18:26:47.354][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.355][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-03-19 18:26:47.355][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.355][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.356][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.356][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.357][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:47.357][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.357][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:47.358][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:47.358][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:47.358][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:47.358][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-19 18:26:47.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.362][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.362][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.363][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.363][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.363][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.364][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.364][ef$get] fields variable is a list.
biodb.INFO [2025-03-19 18:26:47.364][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-19 18:26:47.365][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-19 18:26:47.367][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-19 18:26:47.367][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-19 18:26:47.368][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.368][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.368][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-19 18:26:47.370][biodb::testContext]
biodb.INFO [2025-03-19 18:26:47.370][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:47.370][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-19 18:26:47.371][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:47.371][biodb::testContext]
biodb.INFO [2025-03-19 18:26:47.373][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-19 18:26:47.373][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-19 18:26:47.377][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:47.377][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-19 18:26:47.377][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.378][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-19 18:26:47.379][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.379][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-19 18:26:47.380][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.380][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-19 18:26:47.381][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-19 18:26:47.381][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-19 18:26:47.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.382][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-19 18:26:47.382][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-19 18:26:47.382][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.383][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-19 18:26:47.383][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-19 18:26:47.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.384][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-19 18:26:47.384][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-19 18:26:47.385][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-19 18:26:47.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.385][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-19 18:26:47.386][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.386][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-19 18:26:47.387][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-19 18:26:47.387][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.388][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-19 18:26:47.388][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-19 18:26:47.388][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-19 18:26:47.388][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-19 18:26:47.389][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-19 18:26:47.389][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-19 18:26:47.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.390][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-19 18:26:47.390][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-19 18:26:47.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.391][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-19 18:26:47.391][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-19 18:26:47.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.392][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-19 18:26:47.392][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-19 18:26:47.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.393][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-19 18:26:47.393][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-19 18:26:47.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.394][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-19 18:26:47.394][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-19 18:26:47.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.395][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-19 18:26:47.395][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-19 18:26:47.401][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-19 18:26:47.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.402][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-19 18:26:47.402][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-19 18:26:47.402][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-19 18:26:47.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.403][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-19 18:26:47.404][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.404][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-19 18:26:47.405][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.405][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.405][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.405][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.406][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.406][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.406][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 18:26:47.406][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.407][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.407][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-19 18:26:47.407][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.410][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.410][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.410][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:47.410][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 18:26:47.410][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 18:26:47.410][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 18:26:47.410][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 18:26:47.411][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.411][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.411][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.411][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.412][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.412][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.412][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.413][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.413][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.413][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.413][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.414][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-19 18:26:47.414][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.414][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 18:26:47.415][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.415][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.415][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.415][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.416][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.416][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.416][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 18:26:47.416][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.417][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.417][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-19 18:26:47.417][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.417][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.418][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.418][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:47.418][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 18:26:47.418][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 18:26:47.418][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 18:26:47.418][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 18:26:47.418][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.419][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.420][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.420][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.420][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.420][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.421][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.421][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.421][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-19 18:26:47.422][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.422][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-19 18:26:47.422][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.422][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.423][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.423][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.423][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.423][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.424][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 18:26:47.424][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.424][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.424][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-19 18:26:47.425][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.425][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.425][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.425][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.426][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.426][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.426][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.426][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.427][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.427][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.427][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.428][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.428][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.428][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.428][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.429][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-19 18:26:47.429][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.429][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 18:26:47.430][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.430][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.430][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.430][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.431][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.431][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.431][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 18:26:47.431][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.432][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.432][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-19 18:26:47.432][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.432][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.433][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.433][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.433][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.433][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.434][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.434][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.434][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.434][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.434][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.435][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.435][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.435][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.435][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.436][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.436][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:47.436][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.458][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-19 18:26:47.458][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-19 18:26:47.459][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-19 18:26:47.459][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-19 18:26:47.459][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-19 18:26:47.460][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 18:26:47.460][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-19 18:26:47.461][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-19 18:26:47.461][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-19 18:26:47.461][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 18:26:47.462][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 18:26:47.462][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-19 18:26:47.462][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-19 18:26:47.463][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-19 18:26:47.463][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-19 18:26:47.463][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 18:26:47.464][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-19 18:26:47.464][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-19 18:26:47.465][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-19 18:26:47.467][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-19 18:26:47.468][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-19 18:26:47.468][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-19 18:26:47.469][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-19 18:26:47.469][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-19 18:26:47.469][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-19 18:26:47.470][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-19 18:26:47.470][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-19 18:26:47.470][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-19 18:26:47.471][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-19 18:26:47.471][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-19 18:26:47.472][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-19 18:26:47.472][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-19 18:26:47.472][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-19 18:26:47.473][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-19 18:26:47.473][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-19 18:26:47.473][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-19 18:26:47.474][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-19 18:26:47.474][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-19 18:26:47.474][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-19 18:26:47.475][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-19 18:26:47.475][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-19 18:26:47.476][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-19 18:26:47.476][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-19 18:26:47.476][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-19 18:26:47.477][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-19 18:26:47.477][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-19 18:26:47.477][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-19 18:26:47.478][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-19 18:26:47.478][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-19 18:26:47.478][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-19 18:26:47.479][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-19 18:26:47.479][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-19 18:26:47.480][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-19 18:26:47.480][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-19 18:26:47.480][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-19 18:26:47.481][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-19 18:26:47.481][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-19 18:26:47.481][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-19 18:26:47.482][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-19 18:26:47.482][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-19 18:26:47.482][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-19 18:26:47.483][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-19 18:26:47.483][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-19 18:26:47.483][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-19 18:26:47.484][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-19 18:26:47.484][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-19 18:26:47.485][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-19 18:26:47.485][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-19 18:26:47.485][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-19 18:26:47.486][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-19 18:26:47.486][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-19 18:26:47.486][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-19 18:26:47.487][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-19 18:26:47.487][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-19 18:26:47.487][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-19 18:26:47.488][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-19 18:26:47.488][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-19 18:26:47.489][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-19 18:26:47.489][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-19 18:26:47.489][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-19 18:26:47.490][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-19 18:26:47.490][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-19 18:26:47.490][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-19 18:26:47.491][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-19 18:26:47.491][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-19 18:26:47.492][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:47.492][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.492][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.522][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-19 18:26:47.524][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.525][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.526][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.526][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.526][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.526][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.527][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-19 18:26:47.527][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.527][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.527][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-19 18:26:47.528][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.528][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.528][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-19 18:26:47.528][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-19 18:26:47.529][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-19 18:26:47.530][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-19 18:26:47.530][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.530][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.530][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.531][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.531][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.531][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.531][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 18:26:47.531][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-19 18:26:47.531][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.532][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.532][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.532][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.532][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-19 18:26:47.533][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 18:26:47.533][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 18:26:47.534][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 18:26:47.534][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 18:26:47.535][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.535][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-19 18:26:47.536][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.536][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:47.536][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.537][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.537][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-19 18:26:47.537][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-19 18:26:47.538][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 18:26:47.538][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-19 18:26:47.538][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.538][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.538][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-19 18:26:47.538][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-19 18:26:47.539][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.539][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:47.539][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.540][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.540][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:47.540][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.541][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-19 18:26:47.541][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.541][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-19 18:26:47.541][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.542][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.543][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.543][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.544][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:47.544][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.544][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:47.545][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:47.545][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:47.545][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:47.546][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:47.546][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-19 18:26:47.548][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.549][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-19 18:26:47.549][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.549][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.550][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-19 18:26:47.550][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 18:26:47.550][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.551][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 18:26:47.551][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-19 18:26:47.552][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 18:26:47.553][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-19 18:26:47.553][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 18:26:47.553][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 18:26:47.554][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 18:26:47.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:47.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:47.561][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.562][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.563][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.563][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.564][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.565][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.565][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.566][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.567][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.567][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.568][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.570][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.571][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.571][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.572][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.573][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.573][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.574][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.576][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.577][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.577][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.578][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.579][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.579][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.580][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.581][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.581][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.583][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.588][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.590][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.592][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.593][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.593][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.594][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.595][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.595][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.597][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:47.597][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.598][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.606][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.625][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.626][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.650][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.651][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.651][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.655][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.665][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:47.679][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-19 18:26:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-19 18:26:47.684][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-19 18:26:47.685][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-19 18:26:47.685][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-19 18:26:47.685][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-19 18:26:47.685][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.686][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.686][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-19 18:26:47.688][biodb::testContext]
biodb.INFO [2025-03-19 18:26:47.688][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:47.688][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-19 18:26:47.688][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 18:26:47.689][biodb::testContext]
biodb.INFO [2025-03-19 18:26:47.690][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-19 18:26:47.690][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-19 18:26:47.692][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:47.692][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-19 18:26:47.692][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.693][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-19 18:26:47.693][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.694][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-19 18:26:47.695][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.695][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-19 18:26:47.696][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-19 18:26:47.696][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-19 18:26:47.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.697][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-19 18:26:47.697][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-19 18:26:47.697][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.698][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-19 18:26:47.698][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-19 18:26:47.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.702][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-19 18:26:47.702][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-19 18:26:47.702][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-19 18:26:47.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.703][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-19 18:26:47.703][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.704][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-19 18:26:47.704][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-19 18:26:47.705][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-19 18:26:47.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.705][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-19 18:26:47.706][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-19 18:26:47.706][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-19 18:26:47.706][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-19 18:26:47.706][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-19 18:26:47.707][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-19 18:26:47.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.707][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-19 18:26:47.708][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-19 18:26:47.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.709][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-19 18:26:47.709][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-19 18:26:47.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.710][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-19 18:26:47.710][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-19 18:26:47.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.711][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-19 18:26:47.711][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-19 18:26:47.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.712][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-19 18:26:47.712][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-19 18:26:47.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.713][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-19 18:26:47.713][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-19 18:26:47.719][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-19 18:26:47.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.720][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-19 18:26:47.720][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-19 18:26:47.721][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-19 18:26:47.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.722][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-19 18:26:47.722][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.722][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-19 18:26:47.723][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.723][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.723][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.724][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.724][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.724][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.724][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 18:26:47.725][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.725][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.725][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-19 18:26:47.725][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 18:26:47.726][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.727][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.727][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.727][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.727][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.728][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.728][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.728][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.729][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.729][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.729][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.729][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.730][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-19 18:26:47.730][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.730][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 18:26:47.731][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.731][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.731][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.732][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.732][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.732][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.732][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 18:26:47.735][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.736][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.736][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-19 18:26:47.737][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.737][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.737][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.738][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:47.738][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 18:26:47.738][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 18:26:47.738][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 18:26:47.738][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 18:26:47.738][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.738][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.739][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.740][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.740][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.740][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.740][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.741][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.741][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.741][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-19 18:26:47.742][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.742][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-19 18:26:47.742][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.742][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.743][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.743][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.743][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.743][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.744][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 18:26:47.744][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.744][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.745][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-19 18:26:47.745][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.745][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.745][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.746][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.746][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.746][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.747][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.747][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.748][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.748][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.748][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.748][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.748][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.749][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-19 18:26:47.749][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.750][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 18:26:47.750][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.750][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.750][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.751][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.751][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.751][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.751][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 18:26:47.752][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.752][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.752][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-19 18:26:47.752][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.753][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.753][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.753][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.753][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 18:26:47.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.754][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.755][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.755][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.755][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.756][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.756][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.756][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.756][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:47.757][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.780][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-19 18:26:47.781][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-19 18:26:47.781][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-19 18:26:47.782][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-19 18:26:47.782][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-19 18:26:47.782][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 18:26:47.783][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-19 18:26:47.783][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-19 18:26:47.783][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-19 18:26:47.786][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 18:26:47.787][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 18:26:47.787][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-19 18:26:47.788][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-19 18:26:47.788][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-19 18:26:47.788][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-19 18:26:47.789][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 18:26:47.789][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-19 18:26:47.789][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-19 18:26:47.790][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-19 18:26:47.790][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-19 18:26:47.791][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-19 18:26:47.791][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-19 18:26:47.791][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-19 18:26:47.792][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-19 18:26:47.792][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-19 18:26:47.792][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-19 18:26:47.793][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-19 18:26:47.793][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-19 18:26:47.794][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-19 18:26:47.794][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-19 18:26:47.794][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-19 18:26:47.795][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-19 18:26:47.798][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-19 18:26:47.798][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-19 18:26:47.799][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-19 18:26:47.799][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-19 18:26:47.799][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-19 18:26:47.800][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-19 18:26:47.800][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-19 18:26:47.800][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-19 18:26:47.801][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-19 18:26:47.801][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-19 18:26:47.802][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-19 18:26:47.802][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-19 18:26:47.802][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-19 18:26:47.803][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-19 18:26:47.803][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-19 18:26:47.803][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-19 18:26:47.804][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-19 18:26:47.804][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-19 18:26:47.804][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-19 18:26:47.805][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-19 18:26:47.805][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-19 18:26:47.806][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-19 18:26:47.806][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-19 18:26:47.806][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-19 18:26:47.807][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-19 18:26:47.807][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-19 18:26:47.807][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-19 18:26:47.808][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-19 18:26:47.808][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-19 18:26:47.809][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-19 18:26:47.809][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-19 18:26:47.809][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-19 18:26:47.810][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-19 18:26:47.810][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-19 18:26:47.810][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-19 18:26:47.811][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-19 18:26:47.811][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-19 18:26:47.811][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-19 18:26:47.812][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-19 18:26:47.812][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-19 18:26:47.813][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-19 18:26:47.814][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-19 18:26:47.814][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-19 18:26:47.814][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-19 18:26:47.815][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-19 18:26:47.815][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-19 18:26:47.816][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-19 18:26:47.816][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-19 18:26:47.816][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-19 18:26:47.817][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-19 18:26:47.817][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-19 18:26:47.818][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-19 18:26:47.818][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-19 18:26:47.818][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 18:26:47.819][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.819][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 18:26:47.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:47.849][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-19 18:26:47.850][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.850][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.850][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.851][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.851][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 18:26:47.851][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.852][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-19 18:26:47.852][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.852][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.852][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-19 18:26:47.853][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 18:26:47.855][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-19 18:26:47.856][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-19 18:26:47.857][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-19 18:26:47.857][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 18:26:47.857][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-19 18:26:47.857][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-19 18:26:47.857][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-19 18:26:47.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.858][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 18:26:47.858][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 18:26:47.858][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 18:26:47.859][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 18:26:47.859][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 18:26:47.859][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-19 18:26:47.859][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.859][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.860][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-19 18:26:47.860][self$setPropertyValue]
biodb.DEBUG[2025-03-19 18:26:47.860][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-19 18:26:47.861][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 18:26:47.861][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 18:26:47.861][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 18:26:47.862][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 18:26:47.863][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.863][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-19 18:26:47.864][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.864][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:47.865][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.865][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.865][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-19 18:26:47.866][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-19 18:26:47.866][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 18:26:47.866][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-19 18:26:47.866][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 18:26:47.866][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 18:26:47.867][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-19 18:26:47.867][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-19 18:26:47.867][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 18:26:47.868][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:47.868][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.868][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.868][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 18:26:47.869][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 18:26:47.869][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-19 18:26:47.870][biodb::testThat]
biodb.INFO [2025-03-19 18:26:47.870][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-19 18:26:47.870][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 18:26:47.870][biodb::testThat]
biodb.DEBUG[2025-03-19 18:26:47.871][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 18:26:47.871][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-19 18:26:47.871][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-19 18:26:47.872][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.873][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.873][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:47.874][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.874][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:47.874][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:47.875][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:47.875][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:47.875][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:47.875][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 18:26:47.876][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-19 18:26:47.876][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-19 18:26:47.876][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 18:26:47.877][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:47.877][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 18:26:47.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 18:26:47.878][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 18:26:47.879][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-19 18:26:47.879][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 18:26:47.879][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 18:26:47.880][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 18:26:47.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:47.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:47.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:47.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:47.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:47.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:47.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:47.885][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.889][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.890][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.890][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.891][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.892][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.892][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.893][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.894][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.895][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.897][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.899][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.899][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.899][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.902][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.905][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.905][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.906][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.907][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.908][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.909][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.910][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.912][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.919][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.921][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.921][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.923][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.923][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.923][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.925][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.925][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.927][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:47.927][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.928][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.928][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:47.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.936][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:47.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:47.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.961][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.962][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:47.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:47.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:47.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.974][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:47.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:47.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:47.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.988][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.990][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:47.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:47.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.006][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.019][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-19 18:26:48.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.023][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.024][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:48.024][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 18:26:48.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:48.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:48.028][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-19 18:26:48.028][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 18:26:48.029][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:48.029][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 18:26:48.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-19 18:26:48.030][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 18:26:48.030][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-19 18:26:48.031][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 18:26:48.031][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 18:26:48.031][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 18:26:48.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:48.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:48.036][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.037][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.038][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.038][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.039][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.039][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.040][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.040][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.041][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.041][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.045][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.045][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.046][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.046][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.048][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.050][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.050][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.050][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.052][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.052][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.054][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.056][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.056][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.056][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.058][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.058][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.058][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.060][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:48.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:48.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.060][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:48.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:48.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:48.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.062][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:48.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:48.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.064][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.066][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.067][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.068][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.068][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.069][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.069][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.070][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.070][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.074][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:48.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:48.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.075][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.076][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:48.076][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.077][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 18:26:48.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.083][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 18:26:48.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.084][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 18:26:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 18:26:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 18:26:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 18:26:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 18:26:48.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 18:26:48.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.108][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:48.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 18:26:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 18:26:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:48.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 18:26:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 18:26:48.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.118][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 18:26:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 18:26:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 18:26:48.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 18:26:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:48.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 18:26:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 18:26:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:48.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.143][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 18:26:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 18:26:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 18:26:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 18:26:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.150][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.152][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 18:26:48.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 18:26:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 18:26:48.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.163][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-19 18:26:48.163][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.165][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.167][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:48.167][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:48.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:48.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:48.173][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 18:26:48.173][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-19 18:26:48.173][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-19 18:26:48.174][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:48.174][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:48.175][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:48.175][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:48.175][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:48.176][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:48.176][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:48.176][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:48.177][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:48.177][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 18:26:48.177][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 18:26:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.181][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.185][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:48.185][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 18:26:48.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:48.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.190][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.200][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-19 18:26:48.200][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 18:26:48.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:48.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 18:26:48.205][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 18:26:48.205][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-19 18:26:48.205][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-19 18:26:48.206][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:48.206][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:48.207][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 18:26:48.207][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 18:26:48.207][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 18:26:48.208][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 18:26:48.208][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 18:26:48.208][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 18:26:48.209][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 18:26:48.209][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 18:26:48.209][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 18:26:48.210][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.217][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-19 18:26:48.217][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-19 18:26:48.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:48.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 18:26:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.224][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.228][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 18:26:48.231][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 18:26:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 18:26:48.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 18:26:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 18:26:48.232][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 18:26:48.232][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 18:26:48.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 18:26:48.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-19 18:26:48.238][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-19 18:26:48.238][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-19 18:26:48.239][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-19 18:26:48.239][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-19 18:26:48.239][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 18:26:48.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 18:26:48.240][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 18:26:48.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 18:26:48.240][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 18:26:48.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  2.640   0.170   4.697

CHECK results for biodbHmdb on kjohnson3

Summary

Command output

Installation output

Tests output

Example timings