Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences"	4777
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"	4545
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4576
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences"	4528
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4458
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on palomino7

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-03-19 23:13:33 -0400 (Wed, 19 Mar 2025)

EndedAt: 2025-03-19 23:18:01 -0400 (Wed, 19 Mar 2025)

EllapsedTime: 267.4 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck'
* using R Under development (unstable) (2025-03-01 r87860 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** this is package 'biodbHmdb' version '1.13.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-03-19 23:17:42.503][biodb::testContext]
biodb.INFO [2025-03-19 23:17:42.506][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:42.507][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-03-19 23:17:42.508][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:42.509][biodb::testContext]
biodb.INFO [2025-03-19 23:17:42.511][biodb::testThat]
biodb.INFO [2025-03-19 23:17:42.512][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-03-19 23:17:42.513][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:42.515][biodb::testThat]
biodb.INFO [2025-03-19 23:17:42.696][biodb::testContext]
biodb.INFO [2025-03-19 23:17:42.698][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:42.699][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-03-19 23:17:42.700][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:42.701][biodb::testContext]
biodb.INFO [2025-03-19 23:17:42.711][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-19 23:17:42.714][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-19 23:17:42.722][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:42.723][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-19 23:17:42.724][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-19 23:17:42.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.729][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-19 23:17:42.752][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-19 23:17:42.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.757][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-19 23:17:42.758][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-19 23:17:42.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.762][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-19 23:17:42.764][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-19 23:17:42.765][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-19 23:17:42.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.769][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-19 23:17:42.770][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-19 23:17:42.772][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-19 23:17:42.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.776][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-19 23:17:42.777][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-19 23:17:42.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.782][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-19 23:17:42.783][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-19 23:17:42.784][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-19 23:17:42.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.789][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-19 23:17:42.790][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-19 23:17:42.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.795][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-19 23:17:42.796][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-19 23:17:42.797][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-19 23:17:42.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.802][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-19 23:17:42.803][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-19 23:17:42.804][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-19 23:17:42.805][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-19 23:17:42.806][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-19 23:17:42.808][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-19 23:17:42.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.812][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-19 23:17:42.814][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-19 23:17:42.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.818][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-19 23:17:42.819][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-19 23:17:42.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.824][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-19 23:17:42.825][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-19 23:17:42.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.830][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-19 23:17:42.831][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-19 23:17:42.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.835][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-19 23:17:42.837][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-19 23:17:42.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.841][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-19 23:17:42.842][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-19 23:17:42.846][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-19 23:17:42.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.850][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-19 23:17:42.852][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-19 23:17:42.853][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-19 23:17:42.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:42.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:42.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:42.860][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-19 23:17:42.887][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:42.901][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-19 23:17:42.902][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.903][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:42.905][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.906][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:42.908][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:42.910][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:42.912][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 23:17:42.914][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:42.916][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.918][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-19 23:17:42.920][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:42.922][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:42.924][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.926][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:42.926][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 23:17:42.926][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 23:17:42.926][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 23:17:42.926][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 23:17:42.928][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:42.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:42.932][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:42.934][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:42.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:42.937][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:42.939][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:42.941][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:42.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:42.945][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:42.947][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:42.949][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:42.951][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-19 23:17:42.954][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:42.955][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 23:17:42.957][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.959][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:42.961][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.963][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:42.973][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:42.974][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:42.976][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 23:17:42.978][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:42.980][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.982][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-19 23:17:42.984][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:42.986][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:42.987][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:42.989][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:42.989][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 23:17:42.989][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 23:17:42.989][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 23:17:42.989][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 23:17:42.991][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:42.993][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:42.995][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:42.997][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:42.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:43.000][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:43.002][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.004][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.006][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:43.007][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:43.009][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.011][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.013][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-19 23:17:43.016][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.018][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-19 23:17:43.020][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.022][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:43.024][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.025][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.027][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.029][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.031][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 23:17:43.033][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:43.035][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.037][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-19 23:17:43.039][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:43.041][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.043][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.044][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.046][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:43.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:43.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:43.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:43.054][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:43.055][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:43.057][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.059][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.061][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:43.063][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:43.065][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.066][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.069][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-19 23:17:43.072][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.074][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 23:17:43.075][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.077][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:43.079][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.080][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.081][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.082][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.084][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 23:17:43.085][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:43.086][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.087][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-19 23:17:43.088][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:43.090][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.091][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.092][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.093][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:43.094][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:43.096][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:43.097][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:43.098][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:43.099][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:43.100][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.101][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.102][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:43.103][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:43.105][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.106][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.110][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:43.111][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.224][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-19 23:17:43.228][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-19 23:17:43.230][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-19 23:17:43.232][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-19 23:17:43.233][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-19 23:17:43.235][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 23:17:43.236][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-19 23:17:43.238][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-19 23:17:43.267][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-19 23:17:43.269][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 23:17:43.270][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 23:17:43.272][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-19 23:17:43.274][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-19 23:17:43.275][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-19 23:17:43.277][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-19 23:17:43.278][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 23:17:43.280][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-19 23:17:43.281][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-19 23:17:43.283][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-19 23:17:43.284][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-19 23:17:43.286][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-19 23:17:43.287][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-19 23:17:43.289][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-19 23:17:43.290][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-19 23:17:43.292][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-19 23:17:43.293][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-19 23:17:43.295][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-19 23:17:43.297][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-19 23:17:43.298][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-19 23:17:43.300][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-19 23:17:43.301][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-19 23:17:43.303][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-19 23:17:43.304][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-19 23:17:43.306][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-19 23:17:43.307][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-19 23:17:43.309][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-19 23:17:43.311][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-19 23:17:43.312][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-19 23:17:43.314][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-19 23:17:43.315][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-19 23:17:43.317][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-19 23:17:43.318][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-19 23:17:43.320][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-19 23:17:43.321][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-19 23:17:43.323][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-19 23:17:43.325][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-19 23:17:43.326][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-19 23:17:43.328][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-19 23:17:43.329][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-19 23:17:43.331][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-19 23:17:43.332][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-19 23:17:43.334][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-19 23:17:43.335][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-19 23:17:43.337][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-19 23:17:43.339][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-19 23:17:43.340][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-19 23:17:43.342][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-19 23:17:43.343][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-19 23:17:43.345][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-19 23:17:43.346][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-19 23:17:43.348][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-19 23:17:43.349][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-19 23:17:43.351][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-19 23:17:43.353][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-19 23:17:43.354][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-19 23:17:43.356][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-19 23:17:43.357][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-19 23:17:43.359][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-19 23:17:43.360][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-19 23:17:43.362][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-19 23:17:43.363][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-19 23:17:43.365][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-19 23:17:43.366][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-19 23:17:43.368][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-19 23:17:43.369][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-19 23:17:43.371][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-19 23:17:43.372][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-19 23:17:43.374][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-19 23:17:43.376][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-19 23:17:43.377][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-19 23:17:43.379][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-19 23:17:43.380][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-19 23:17:43.382][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-19 23:17:43.405][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-19 23:17:43.407][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-19 23:17:43.410][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:43.411][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.414][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:43.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:43.552][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-19 23:17:43.561][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:43.563][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.565][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.566][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.567][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:43.568][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.569][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-19 23:17:43.571][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.572][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.573][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-19 23:17:43.574][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:43.575][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.576][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-19 23:17:43.578][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-19 23:17:43.579][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-19 23:17:43.580][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:43.581][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:43.581][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-19 23:17:43.581][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-19 23:17:43.583][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-19 23:17:43.584][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:43.585][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:43.586][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:43.587][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:43.588][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:43.589][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:43.590][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 23:17:43.590][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-19 23:17:43.592][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:43.593][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:43.594][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:43.595][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:43.601][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-19 23:17:43.602][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 23:17:43.604][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 23:17:43.606][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 23:17:43.607][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 23:17:43.628][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:43.629][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-19 23:17:43.632][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:43.636][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:43.640][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:43.641][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:43.642][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-19 23:17:43.644][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-19 23:17:43.645][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 23:17:43.645][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-19 23:17:43.646][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:43.647][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:43.648][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-19 23:17:43.649][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-19 23:17:43.651][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:43.673][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:43.674][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:43.675][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:43.677][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:43.678][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:43.680][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-19 23:17:43.688][biodb::testThat]
biodb.INFO [2025-03-19 23:17:43.689][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-03-19 23:17:43.691][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:43.692][biodb::testThat]
biodb.TRACE[2025-03-19 23:17:43.706][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-03-19 23:17:43.708][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 23:17:43.711][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 23:17:43.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:43.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:43.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:43.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:43.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:43.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:43.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:44.009][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.013][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.029][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.030][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.060][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.061][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.063][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.070][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.071][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.073][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.083][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.090][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.091][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.093][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.103][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.113][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.128][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.129][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.131][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.138][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.139][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.141][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:44.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:44.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.151][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:44.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.161][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:44.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.171][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.182][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.188][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.192][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.198][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:44.199][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:44.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.201][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.203][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:44.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:44.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.208][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:44.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:44.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.211][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.218][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:44.219][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.221][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:44.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:44.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:44.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:44.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:44.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:44.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:44.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:44.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:44.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:44.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:44.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.597][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:44.644][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-19 23:17:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 23:17:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 23:17:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 23:17:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 23:17:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-19 23:17:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-19 23:17:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.661][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-19 23:17:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-19 23:17:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.868][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.905][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.908][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:44.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:44.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.944][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.945][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.948][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.987][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.988][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.991][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:44.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.033][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.066][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.089][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.107][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:45.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:45.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.152][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:45.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:45.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.160][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.198][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:45.200][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:45.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.202][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.203][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:45.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:45.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:45.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:45.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:45.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.238][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:45.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:45.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.242][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.262][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.272][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.273][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.275][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.276][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.314][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.352][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.353][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.355][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.400][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.402][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.404][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.442][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.444][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.446][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:45.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:45.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.476][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:45.477][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:45.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.480][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:45.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:45.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:45.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:45.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:45.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.520][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:45.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.561][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.600][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.610][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.611][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.613][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.635][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:45.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:45.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.639][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.659][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.660][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:45.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.663][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.676][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.678][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:45.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.680][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:45.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.690][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.700][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:45.702][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:45.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.704][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.722][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.723][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.725][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.742][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:45.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.745][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.752][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.753][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:45.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.755][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.776][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:45.779][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:45.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.782][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.794][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:45.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:45.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.797][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:45.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.817][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:45.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.836][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:45.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.855][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.867][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:45.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.870][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.886][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:45.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:45.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:45.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.918][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.925][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:45.926][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:45.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.929][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:45.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:45.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:45.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:45.954][ef$get] fields variable is a list.
biodb.INFO [2025-03-19 23:17:45.976][biodb::testThat]
biodb.INFO [2025-03-19 23:17:45.978][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-03-19 23:17:45.979][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:45.981][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:45.994][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-19 23:17:46.000][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 23:17:46.366][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:46.368][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 23:17:46.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 23:17:46.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 23:17:46.391][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-19 23:17:46.392][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 23:17:46.412][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 23:17:46.414][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 23:17:46.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:46.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:46.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:46.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:46.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:46.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:46.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:46.442][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.447][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.455][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.456][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.459][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.460][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.465][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.467][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.469][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.475][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.476][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.479][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.495][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.501][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.502][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.504][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.512][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.514][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.516][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.524][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.531][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.532][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.534][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.541][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.542][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.544][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.551][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:46.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:46.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.554][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.561][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:46.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:46.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.565][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:46.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:46.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.575][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.585][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.595][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.601][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:46.602][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:46.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.605][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.611][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:46.612][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:46.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.621][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:46.622][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.626][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.660][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:46.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.665][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:46.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:46.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:46.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:46.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:46.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:46.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:46.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.760][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:46.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:46.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:46.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:46.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:46.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.814][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:46.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:46.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.879][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:46.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:46.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:46.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.922][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:46.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:46.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.952][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.004][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-19 23:17:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-03-19 23:17:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-03-19 23:17:47.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-03-19 23:17:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-03-19 23:17:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-03-19 23:17:47.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-03-19 23:17:47.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-19 23:17:47.046][biodb::testThat]
biodb.INFO [2025-03-19 23:17:47.047][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-03-19 23:17:47.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:47.049][biodb::testThat]
biodb.TRACE[2025-03-19 23:17:47.053][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.056][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.058][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-03-19 23:17:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.118][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-03-19 23:17:47.120][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-19 23:17:47.121][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 23:17:47.122][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 23:17:47.124][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.126][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.128][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:47.129][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.130][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:47.132][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:47.133][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:47.135][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:47.136][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:47.138][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 23:17:47.139][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 23:17:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.160][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:47.161][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 23:17:47.163][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 23:17:47.188][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.190][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.192][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.194][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-03-19 23:17:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.252][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.264][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-03-19 23:17:47.308][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 23:17:47.310][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-19 23:17:47.311][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-03-19 23:17:47.323][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.325][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.327][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:47.329][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.330][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:47.349][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:47.350][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:47.351][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:47.353][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:47.354][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 23:17:47.355][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 23:17:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.362][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.367][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:47.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.377][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:47.378][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 23:17:47.379][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 23:17:47.424][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.426][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.428][ef$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.430][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-03-19 23:17:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.453][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.466][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-03-19 23:17:47.468][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-03-19 23:17:47.469][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-19 23:17:47.470][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-03-19 23:17:47.472][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.474][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.476][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:47.478][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.479][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:47.480][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:47.482][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:47.483][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:47.484][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:47.486][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 23:17:47.487][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 23:17:47.489][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.499][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.509][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:47.510][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 23:17:47.511][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-03-19 23:17:47.639][biodb::testThat]
biodb.INFO [2025-03-19 23:17:47.640][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-03-19 23:17:47.641][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:47.642][biodb::testThat]
biodb.TRACE[2025-03-19 23:17:47.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.688][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-03-19 23:17:47.689][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 23:17:47.691][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-03-19 23:17:47.693][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.695][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.696][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:47.698][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:47.699][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:47.701][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:47.702][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:47.704][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:47.705][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:47.706][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 23:17:47.707][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 23:17:47.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:47.729][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:47.730][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-03-19 23:17:47.754][biodb::testThat]
biodb.INFO [2025-03-19 23:17:47.755][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-03-19 23:17:47.756][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:47.757][biodb::testThat]
biodb.TRACE[2025-03-19 23:17:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-19 23:17:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-19 23:17:47.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-19 23:17:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-19 23:17:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.844][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-03-19 23:17:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-03-19 23:17:47.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-03-19 23:17:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-03-19 23:17:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-03-19 23:17:47.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-19 23:17:47.875][biodb::testThat]
biodb.INFO [2025-03-19 23:17:47.876][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-03-19 23:17:47.877][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:47.878][biodb::testThat]
biodb.INFO [2025-03-19 23:17:47.904][biodb::testThat]
biodb.INFO [2025-03-19 23:17:47.905][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-03-19 23:17:47.906][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:47.907][biodb::testThat]
biodb.INFO [2025-03-19 23:17:48.761][biodb::testThat]
biodb.INFO [2025-03-19 23:17:48.762][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-03-19 23:17:48.764][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:48.765][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:48.770][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-03-19 23:17:49.545][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-03-19 23:17:51.915][biodb::testThat]
biodb.INFO [2025-03-19 23:17:51.917][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-03-19 23:17:51.918][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:51.919][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:52.049][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-03-19 23:17:52.231][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:52.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:52.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.235][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.236][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:52.238][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:52.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.240][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.241][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:52.242][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:52.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.245][ef$get] fields variable is a list.
biodb.INFO [2025-03-19 23:17:52.247][biodb::testThat]
biodb.INFO [2025-03-19 23:17:52.248][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-03-19 23:17:52.249][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:52.250][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:52.253][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-03-19 23:17:52.329][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 23:17:52.332][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.334][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 23:17:52.348][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-03-19 23:17:52.349][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-19 23:17:52.351][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-19 23:17:52.352][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 23:17:52.354][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.355][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 23:17:52.357][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 23:17:52.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:52.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:52.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:52.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:52.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:52.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:52.425][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-19 23:17:52.426][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-03-19 23:17:52.445][biodb::testThat]
biodb.INFO [2025-03-19 23:17:52.446][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-03-19 23:17:52.448][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:52.449][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:52.457][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-03-19 23:17:52.458][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-03-19 23:17:52.459][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 23:17:52.462][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.463][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 23:17:52.466][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-03-19 23:17:52.467][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-03-19 23:17:52.469][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-03-19 23:17:52.470][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 23:17:52.472][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.473][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 23:17:52.475][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 23:17:52.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:52.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:52.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:52.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:52.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:52.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.505][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:52.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:52.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:52.539][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-03-19 23:17:52.540][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-03-19 23:17:52.541][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-03-19 23:17:52.566][biodb::testThat]
biodb.INFO [2025-03-19 23:17:52.568][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-03-19 23:17:52.569][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:52.570][biodb::testThat]
biodb.INFO [2025-03-19 23:17:52.627][biodb::testThat]
biodb.INFO [2025-03-19 23:17:52.628][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-03-19 23:17:52.630][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:52.631][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:52.634][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.636][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.637][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:52.639][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.640][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:52.642][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:52.643][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:52.644][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:52.646][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-03-19 23:17:52.658][biodb::testThat]
biodb.INFO [2025-03-19 23:17:52.659][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-03-19 23:17:52.660][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:52.662][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:52.664][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.666][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.668][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:52.670][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:52.671][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:52.672][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:52.674][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:52.675][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:52.676][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-03-19 23:17:52.709][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:52.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:52.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.713][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.714][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:52.715][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:52.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.717][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:52.718][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:52.720][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:52.722][ef$get] fields variable is a list.
biodb.INFO [2025-03-19 23:17:52.723][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-19 23:17:52.725][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-19 23:17:52.732][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-19 23:17:52.733][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-19 23:17:52.734][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:52.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:52.736][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:52.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:52.738][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-19 23:17:52.745][biodb::testContext]
biodb.INFO [2025-03-19 23:17:52.746][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:52.747][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-03-19 23:17:52.749][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:52.750][biodb::testContext]
biodb.INFO [2025-03-19 23:17:52.761][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-19 23:17:52.764][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-19 23:17:52.769][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:52.770][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-19 23:17:52.771][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-19 23:17:52.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.775][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-19 23:17:52.777][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-19 23:17:52.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.781][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-19 23:17:52.782][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-19 23:17:52.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.786][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-19 23:17:52.788][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-19 23:17:52.789][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-19 23:17:52.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.793][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-19 23:17:52.794][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-19 23:17:52.796][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-19 23:17:52.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.800][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-19 23:17:52.801][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-19 23:17:52.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.805][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-19 23:17:52.807][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-19 23:17:52.808][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-19 23:17:52.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.812][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-19 23:17:52.813][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-19 23:17:52.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.818][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-19 23:17:52.819][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-19 23:17:52.820][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-19 23:17:52.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.824][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-19 23:17:52.825][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-19 23:17:52.827][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-19 23:17:52.828][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-19 23:17:52.829][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-19 23:17:52.830][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-19 23:17:52.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.834][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-19 23:17:52.836][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-19 23:17:52.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.840][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-19 23:17:52.841][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-19 23:17:52.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.846][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-19 23:17:52.847][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-19 23:17:52.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.851][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-19 23:17:52.852][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-19 23:17:52.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.857][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-19 23:17:52.858][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-19 23:17:52.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.862][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-19 23:17:52.864][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-19 23:17:52.867][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-19 23:17:52.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.871][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-19 23:17:52.873][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-19 23:17:52.874][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-19 23:17:52.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:52.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:52.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:52.879][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-19 23:17:52.881][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.882][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-19 23:17:52.883][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.885][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:52.886][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.887][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.888][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.895][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.896][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 23:17:52.897][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:52.899][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.900][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-19 23:17:52.901][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:52.902][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.903][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.905][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:52.905][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 23:17:52.905][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 23:17:52.905][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 23:17:52.905][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 23:17:52.906][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:52.907][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:52.908][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:52.909][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:52.911][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:52.912][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:52.913][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.914][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.915][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:52.916][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:52.918][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.919][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.920][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-19 23:17:52.922][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.923][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 23:17:52.924][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.926][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:52.927][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.928][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.929][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.931][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.932][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 23:17:52.933][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:52.934][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.935][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-19 23:17:52.937][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:52.938][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.939][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.940][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:52.940][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 23:17:52.940][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 23:17:52.940][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 23:17:52.940][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 23:17:52.941][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:52.942][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:52.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:52.945][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:52.946][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:52.947][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:52.948][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.949][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.950][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:52.951][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:52.953][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.954][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.955][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-19 23:17:52.957][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.958][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-19 23:17:52.959][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.961][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:52.962][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.963][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.964][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.965][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.966][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 23:17:52.968][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:52.969][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.970][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-19 23:17:52.971][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:52.972][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.974][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.975][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.976][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:52.977][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:52.978][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:52.979][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:52.980][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:52.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:52.983][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.984][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.985][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:52.986][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:52.987][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:52.988][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:52.990][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-19 23:17:52.992][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.993][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 23:17:52.994][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.995][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:52.997][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:52.998][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:52.999][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:53.000][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:53.001][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 23:17:53.002][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:53.004][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:53.005][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-19 23:17:53.006][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:53.007][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:53.008][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:53.010][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:53.011][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:53.012][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:53.013][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:53.014][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:53.015][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:53.016][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:53.017][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:53.023][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:53.025][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:53.026][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:53.027][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:53.029][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:53.030][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:53.031][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.132][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-19 23:17:53.133][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-19 23:17:53.135][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-19 23:17:53.137][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-19 23:17:53.138][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-19 23:17:53.140][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 23:17:53.141][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-19 23:17:53.143][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-19 23:17:53.144][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-19 23:17:53.146][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 23:17:53.148][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 23:17:53.149][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-19 23:17:53.151][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-19 23:17:53.152][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-19 23:17:53.159][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-19 23:17:53.160][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 23:17:53.162][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-19 23:17:53.164][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-19 23:17:53.165][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-19 23:17:53.167][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-19 23:17:53.168][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-19 23:17:53.170][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-19 23:17:53.171][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-19 23:17:53.173][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-19 23:17:53.174][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-19 23:17:53.176][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-19 23:17:53.177][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-19 23:17:53.179][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-19 23:17:53.181][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-19 23:17:53.182][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-19 23:17:53.184][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-19 23:17:53.185][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-19 23:17:53.187][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-19 23:17:53.188][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-19 23:17:53.190][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-19 23:17:53.191][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-19 23:17:53.193][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-19 23:17:53.195][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-19 23:17:53.196][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-19 23:17:53.198][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-19 23:17:53.199][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-19 23:17:53.201][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-19 23:17:53.202][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-19 23:17:53.204][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-19 23:17:53.206][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-19 23:17:53.207][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-19 23:17:53.209][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-19 23:17:53.210][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-19 23:17:53.212][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-19 23:17:53.213][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-19 23:17:53.215][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-19 23:17:53.216][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-19 23:17:53.218][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-19 23:17:53.220][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-19 23:17:53.221][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-19 23:17:53.223][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-19 23:17:53.224][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-19 23:17:53.226][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-19 23:17:53.227][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-19 23:17:53.229][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-19 23:17:53.231][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-19 23:17:53.232][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-19 23:17:53.234][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-19 23:17:53.235][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-19 23:17:53.237][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-19 23:17:53.238][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-19 23:17:53.240][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-19 23:17:53.241][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-19 23:17:53.243][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-19 23:17:53.244][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-19 23:17:53.246][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-19 23:17:53.248][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-19 23:17:53.249][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-19 23:17:53.251][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-19 23:17:53.252][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-19 23:17:53.254][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-19 23:17:53.255][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-19 23:17:53.257][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-19 23:17:53.259][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-19 23:17:53.260][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-19 23:17:53.262][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-19 23:17:53.263][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-19 23:17:53.265][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-19 23:17:53.267][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-19 23:17:53.269][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-19 23:17:53.270][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:53.271][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.279][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:53.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:53.416][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-19 23:17:53.418][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:53.420][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:53.422][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-19 23:17:53.423][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:53.425][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:53.426][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:53.428][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-19 23:17:53.429][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:53.430][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:53.431][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-19 23:17:53.433][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:53.434][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:53.435][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-19 23:17:53.436][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-19 23:17:53.437][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-19 23:17:53.439][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:53.440][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:53.440][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-19 23:17:53.440][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-19 23:17:53.441][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-19 23:17:53.442][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:53.444][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:53.445][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:53.446][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:53.447][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:53.448][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:53.449][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 23:17:53.449][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-19 23:17:53.450][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:53.451][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:53.453][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:53.454][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:53.455][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-19 23:17:53.457][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 23:17:53.459][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 23:17:53.460][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 23:17:53.462][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 23:17:53.465][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:53.467][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-19 23:17:53.468][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:53.470][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:53.471][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:53.472][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:53.474][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-19 23:17:53.475][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-19 23:17:53.476][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 23:17:53.476][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-19 23:17:53.478][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:53.479][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:53.480][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-19 23:17:53.481][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-19 23:17:53.482][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:53.484][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:53.485][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:53.486][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:53.488][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:53.490][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:53.491][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-19 23:17:53.493][biodb::testThat]
biodb.INFO [2025-03-19 23:17:53.494][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-03-19 23:17:53.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:53.496][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:53.501][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:53.503][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:53.505][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:53.507][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:53.508][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:53.509][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:53.511][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:53.512][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:53.513][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:53.517][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-03-19 23:17:53.530][biodb::testThat]
biodb.INFO [2025-03-19 23:17:53.532][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-03-19 23:17:53.533][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:53.534][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:53.536][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-19 23:17:53.537][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 23:17:53.539][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:53.541][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 23:17:53.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-19 23:17:53.551][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 23:17:53.568][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-19 23:17:53.569][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 23:17:53.571][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 23:17:53.573][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 23:17:53.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:53.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:53.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:53.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:53.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:53.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:53.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:53.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:53.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:53.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.596][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:53.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.602][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:53.603][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:53.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.606][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.612][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.613][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.615][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.622][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.623][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.625][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.631][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.635][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.641][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.642][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.645][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.654][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:53.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:53.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.664][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.670][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.672][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.674][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.680][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.682][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.684][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.690][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:53.692][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:53.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.694][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:53.707][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:53.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.709][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:53.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:53.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.715][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.719][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.729][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.735][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:53.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:53.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.739][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.745][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:53.746][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:53.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.748][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.750][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:53.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.754][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:53.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:53.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.758][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:53.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.764][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:53.765][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.768][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.769][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:53.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:53.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.788][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:53.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.803][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.812][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:53.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:53.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:53.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.898][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:53.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:53.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:53.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:53.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:53.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.965][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:54.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:54.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:54.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:54.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:54.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:54.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:54.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.067][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:54.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:54.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:54.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:54.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.095][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:54.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:54.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:54.143][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-19 23:17:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:54.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:54.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-03-19 23:17:54.175][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-19 23:17:54.176][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-19 23:17:54.178][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-19 23:17:54.179][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-19 23:17:54.180][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.182][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.184][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-19 23:17:54.190][biodb::testContext]
biodb.INFO [2025-03-19 23:17:54.192][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:54.193][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-03-19 23:17:54.194][biodb::testContext] ********************************************************************************
biodb.INFO [2025-03-19 23:17:54.195][biodb::testContext]
biodb.INFO [2025-03-19 23:17:54.201][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-03-19 23:17:54.203][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-03-19 23:17:54.209][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:54.210][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-03-19 23:17:54.211][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-03-19 23:17:54.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.216][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-03-19 23:17:54.217][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-03-19 23:17:54.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.221][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-03-19 23:17:54.222][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-03-19 23:17:54.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.232][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-03-19 23:17:54.234][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-03-19 23:17:54.235][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-03-19 23:17:54.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.239][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-03-19 23:17:54.240][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-03-19 23:17:54.242][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-03-19 23:17:54.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.246][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-03-19 23:17:54.247][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-03-19 23:17:54.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.252][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-03-19 23:17:54.253][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-03-19 23:17:54.254][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-03-19 23:17:54.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.259][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-03-19 23:17:54.260][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-03-19 23:17:54.261][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.264][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-03-19 23:17:54.265][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-03-19 23:17:54.267][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-03-19 23:17:54.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.271][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-03-19 23:17:54.272][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-03-19 23:17:54.274][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-03-19 23:17:54.275][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-03-19 23:17:54.276][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-03-19 23:17:54.277][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-03-19 23:17:54.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.282][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-03-19 23:17:54.283][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-03-19 23:17:54.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.287][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-03-19 23:17:54.289][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-03-19 23:17:54.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.293][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-03-19 23:17:54.294][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-03-19 23:17:54.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.298][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-03-19 23:17:54.300][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-03-19 23:17:54.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.304][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-03-19 23:17:54.305][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-03-19 23:17:54.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.311][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-03-19 23:17:54.313][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-03-19 23:17:54.318][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-03-19 23:17:54.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.325][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-03-19 23:17:54.327][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-03-19 23:17:54.329][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-03-19 23:17:54.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.337][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-03-19 23:17:54.340][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.342][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-03-19 23:17:54.344][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.346][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:54.348][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.350][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.352][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.354][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.356][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 23:17:54.358][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:54.360][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.362][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-03-19 23:17:54.364][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:54.366][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.367][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.369][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:54.369][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 23:17:54.369][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 23:17:54.369][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 23:17:54.369][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 23:17:54.371][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:54.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.375][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:54.376][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.383][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.384][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.386][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:54.387][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:54.388][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.389][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.391][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-03-19 23:17:54.393][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.394][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 23:17:54.395][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.396][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:54.397][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.398][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.400][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.401][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.402][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 23:17:54.403][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:54.404][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.406][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-03-19 23:17:54.407][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:54.408][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.409][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.410][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:54.410][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-03-19 23:17:54.410][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-03-19 23:17:54.410][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-03-19 23:17:54.410][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-03-19 23:17:54.412][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:54.413][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.414][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.415][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:54.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.419][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.420][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.421][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:54.422][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:54.423][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.424][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.426][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-03-19 23:17:54.428][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.429][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-03-19 23:17:54.430][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.431][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:54.432][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.434][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.435][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.436][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.437][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-03-19 23:17:54.438][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:54.440][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.441][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-03-19 23:17:54.442][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:54.443][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.444][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.446][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.447][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:54.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.450][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:54.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.452][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.454][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.455][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.456][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:54.457][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:54.458][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.459][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.461][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-03-19 23:17:54.463][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.464][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-03-19 23:17:54.465][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.466][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:54.467][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.469][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.470][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.471][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.472][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-03-19 23:17:54.473][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:54.475][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.476][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-03-19 23:17:54.477][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:54.478][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.479][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.481][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.482][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-03-19 23:17:54.483][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.484][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.485][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:54.487][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.488][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.489][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.490][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.491][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:54.492][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:54.493][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.495][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.496][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:54.497][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.609][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-03-19 23:17:54.610][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-03-19 23:17:54.612][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-03-19 23:17:54.614][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-03-19 23:17:54.615][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-03-19 23:17:54.617][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 23:17:54.618][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-03-19 23:17:54.620][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-03-19 23:17:54.621][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-03-19 23:17:54.623][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 23:17:54.625][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 23:17:54.626][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-03-19 23:17:54.628][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-03-19 23:17:54.629][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-03-19 23:17:54.631][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-03-19 23:17:54.632][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 23:17:54.634][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-03-19 23:17:54.636][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-03-19 23:17:54.637][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-03-19 23:17:54.644][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-03-19 23:17:54.646][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-03-19 23:17:54.647][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-03-19 23:17:54.649][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-03-19 23:17:54.650][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-03-19 23:17:54.652][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-03-19 23:17:54.653][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-03-19 23:17:54.655][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-03-19 23:17:54.656][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-03-19 23:17:54.658][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-03-19 23:17:54.659][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-03-19 23:17:54.661][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-03-19 23:17:54.663][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-03-19 23:17:54.664][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-03-19 23:17:54.666][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-03-19 23:17:54.667][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-03-19 23:17:54.669][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-03-19 23:17:54.670][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-03-19 23:17:54.672][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-03-19 23:17:54.673][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-03-19 23:17:54.675][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-03-19 23:17:54.676][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-03-19 23:17:54.678][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-03-19 23:17:54.680][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-03-19 23:17:54.681][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-03-19 23:17:54.683][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-03-19 23:17:54.684][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-03-19 23:17:54.686][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-03-19 23:17:54.687][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-03-19 23:17:54.689][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-03-19 23:17:54.691][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-03-19 23:17:54.692][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-03-19 23:17:54.694][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-03-19 23:17:54.695][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-03-19 23:17:54.697][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-03-19 23:17:54.698][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-03-19 23:17:54.700][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-03-19 23:17:54.701][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-03-19 23:17:54.703][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-03-19 23:17:54.704][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-03-19 23:17:54.706][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-03-19 23:17:54.708][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-03-19 23:17:54.709][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-03-19 23:17:54.711][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-03-19 23:17:54.712][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-03-19 23:17:54.714][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-03-19 23:17:54.715][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-03-19 23:17:54.717][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-03-19 23:17:54.718][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-03-19 23:17:54.720][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-03-19 23:17:54.722][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-03-19 23:17:54.723][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-03-19 23:17:54.725][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-03-19 23:17:54.726][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-03-19 23:17:54.728][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-03-19 23:17:54.729][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-03-19 23:17:54.731][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-03-19 23:17:54.733][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-03-19 23:17:54.734][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-03-19 23:17:54.736][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-03-19 23:17:54.737][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-03-19 23:17:54.739][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-03-19 23:17:54.740][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-03-19 23:17:54.742][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-03-19 23:17:54.744][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-03-19 23:17:54.746][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-03-19 23:17:54.747][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-03-19 23:17:54.748][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.750][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-03-19 23:17:54.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:54.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:54.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:54.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:54.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:54.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:54.893][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-03-19 23:17:54.895][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:54.897][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.898][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.899][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.900][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-03-19 23:17:54.902][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.903][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-03-19 23:17:54.904][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.905][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.906][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-03-19 23:17:54.908][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-03-19 23:17:54.909][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.910][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-03-19 23:17:54.911][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-03-19 23:17:54.912][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-03-19 23:17:54.914][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-03-19 23:17:54.915][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-03-19 23:17:54.915][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-03-19 23:17:54.915][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-03-19 23:17:54.916][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-03-19 23:17:54.917][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.919][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.920][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-03-19 23:17:54.921][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-03-19 23:17:54.922][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-03-19 23:17:54.923][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-03-19 23:17:54.924][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 23:17:54.924][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-03-19 23:17:54.926][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:54.927][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:54.928][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-03-19 23:17:54.929][self$setPropertyValue]
biodb.DEBUG[2025-03-19 23:17:54.930][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-03-19 23:17:54.932][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-03-19 23:17:54.934][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-03-19 23:17:54.936][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-03-19 23:17:54.937][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-03-19 23:17:54.941][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:54.942][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-03-19 23:17:54.943][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:54.945][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:54.946][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:54.947][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:54.949][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-03-19 23:17:54.950][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-03-19 23:17:54.951][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-03-19 23:17:54.951][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-03-19 23:17:54.953][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-03-19 23:17:54.954][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-03-19 23:17:54.955][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-03-19 23:17:54.956][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-03-19 23:17:54.957][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-03-19 23:17:54.959][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:54.960][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:54.961][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:54.963][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-03-19 23:17:54.965][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-03-19 23:17:54.966][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-03-19 23:17:54.969][biodb::testThat]
biodb.INFO [2025-03-19 23:17:54.970][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-03-19 23:17:54.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-03-19 23:17:54.972][biodb::testThat]
biodb.DEBUG[2025-03-19 23:17:54.975][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 23:17:54.976][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-19 23:17:54.977][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-03-19 23:17:54.981][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:54.983][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:54.985][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:54.987][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:54.988][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:54.989][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:54.991][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:54.992][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:54.993][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:54.994][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 23:17:54.996][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-03-19 23:17:54.998][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-03-19 23:17:55.000][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 23:17:55.003][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:55.005][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 23:17:55.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-03-19 23:17:55.019][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 23:17:55.024][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-03-19 23:17:55.026][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 23:17:55.029][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 23:17:55.031][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 23:17:55.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:55.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:55.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:55.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:55.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:55.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:55.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:55.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.061][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.067][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.069][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.071][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.078][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.079][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.081][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.088][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.089][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.092][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.102][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.109][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.110][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.112][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.120][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.123][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.133][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.140][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.142][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.144][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.151][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.152][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.155][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:55.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:55.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.176][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:55.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:55.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.187][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.198][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.208][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.214][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.216][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.218][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.224][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.225][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.228][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.234][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:55.235][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:55.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.237][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:55.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.244][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:55.245][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.247][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.277][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.282][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.287][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.292][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:55.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:55.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:55.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.494][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:55.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.523][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:55.628][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-03-19 23:17:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:55.649][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:55.650][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 23:17:55.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:55.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:55.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:55.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:55.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:55.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:55.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:55.700][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-03-19 23:17:55.702][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-03-19 23:17:55.704][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:55.706][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-03-19 23:17:55.708][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-03-19 23:17:55.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-03-19 23:17:55.713][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-03-19 23:17:55.714][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-03-19 23:17:55.715][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-03-19 23:17:55.717][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-03-19 23:17:55.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:55.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:55.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:55.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:55.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:55.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:55.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:55.745][ef$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.750][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.757][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.758][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.760][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.766][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.768][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.770][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.771][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.776][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.777][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.780][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.790][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.796][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.797][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.799][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.807][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.809][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:55.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.819][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.825][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.827][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.829][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:55.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.835][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.837][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.839][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:55.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.845][ef$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:55.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:55.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.849][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:55.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:55.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:55.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:55.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.859][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:55.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.869][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:55.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.885][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.895][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:55.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:55.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.901][ef$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.902][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.904][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.911][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:55.912][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:55.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.914][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:55.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:55.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.921][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:55.922][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.924][ef$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.926][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-03-19 23:17:55.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:55.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.947][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.952][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-03-19 23:17:55.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.962][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-03-19 23:17:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-03-19 23:17:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:55.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-03-19 23:17:56.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:56.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:56.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-03-19 23:17:56.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:56.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:56.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-03-19 23:17:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:56.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:56.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:56.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:56.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-03-19 23:17:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:56.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:56.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-03-19 23:17:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-03-19 23:17:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:56.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-03-19 23:17:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-03-19 23:17:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.122][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:56.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:56.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:56.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:56.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-03-19 23:17:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:56.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:56.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:56.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-03-19 23:17:56.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-03-19 23:17:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.189][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:56.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-03-19 23:17:56.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:56.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:56.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:56.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-03-19 23:17:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-03-19 23:17:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-03-19 23:17:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-03-19 23:17:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-03-19 23:17:56.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-03-19 23:17:56.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.273][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:56.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.278][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.294][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-03-19 23:17:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:56.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-03-19 23:17:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-03-19 23:17:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:56.332][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-03-19 23:17:56.334][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.339][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:56.354][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:56.355][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:56.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:56.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:56.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:56.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:56.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:56.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:56.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:56.385][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 23:17:56.386][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-19 23:17:56.387][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-03-19 23:17:56.389][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:56.392][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:56.394][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:56.395][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:56.397][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:56.398][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:56.400][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:56.401][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:56.403][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:56.404][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 23:17:56.405][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 23:17:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.418][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:56.450][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:56.452][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 23:17:56.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:56.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:56.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:56.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:56.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:56.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:56.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.489][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.499][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:56.509][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-19 23:17:56.511][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 23:17:56.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:56.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:56.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:56.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:56.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:56.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:56.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-03-19 23:17:56.531][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-03-19 23:17:56.533][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-19 23:17:56.534][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-03-19 23:17:56.536][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:56.538][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:56.540][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-03-19 23:17:56.542][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-03-19 23:17:56.543][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-03-19 23:17:56.544][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-03-19 23:17:56.546][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-03-19 23:17:56.547][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-03-19 23:17:56.549][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-03-19 23:17:56.551][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-03-19 23:17:56.552][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-03-19 23:17:56.556][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.569][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.584][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.589][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:56.600][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-03-19 23:17:56.602][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-03-19 23:17:56.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:56.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:56.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:56.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:56.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:56.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:56.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-03-19 23:17:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-03-19 23:17:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-03-19 23:17:56.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-03-19 23:17:56.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-03-19 23:17:56.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-03-19 23:17:56.664][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-03-19 23:17:56.666][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-03-19 23:17:56.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-03-19 23:17:56.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:56.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:56.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:56.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:56.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:56.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-03-19 23:17:56.700][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-03-19 23:17:56.702][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-03-19 23:17:56.703][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-03-19 23:17:56.704][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-03-19 23:17:56.705][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-03-19 23:17:56.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-03-19 23:17:56.708][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-03-19 23:17:56.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-03-19 23:17:56.710][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-03-19 23:17:56.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.03    0.50   16.23

CHECK results for biodbHmdb on palomino7

Summary

Command output

Installation output

Tests output

Example timings