Britta Velten
| Snapshot Date: 2025-12-16 13:40 -0500 (Tue, 16 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-12-17 11:35 -0500 (Wed, 17 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4875 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4589 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 915/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz |
| StartedAt: 2025-12-16 20:06:36 -0500 (Tue, 16 Dec 2025) |
| EndedAt: 2025-12-16 20:07:14 -0500 (Tue, 16 Dec 2025) |
| EllapsedTime: 37.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fit_graper.cpp -o fit_graper.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R installing to /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-877.239
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-578.743
ELB improved by 298.496
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-518.855
ELB improved by 59.8885
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.189
ELB improved by 40.666
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.332
ELB improved by 18.8565
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.548
ELB improved by 7.78408
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.971
ELB improved by 4.57721
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.173
ELB improved by 3.79737
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.235
ELB improved by 3.93878
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.786
ELB improved by 4.44907
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.898
ELB improved by 4.88775
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.169
ELB improved by 4.7293
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.363
ELB improved by 3.80595
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.738
ELB improved by 2.62423
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.017
ELB improved by 1.72085
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.821
ELB improved by 1.19689
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.889
ELB improved by 0.931327
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.069
ELB improved by 0.819819
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.254
ELB improved by 0.815381
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.374
ELB improved by 0.879598
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.437
ELB improved by 0.937855
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.475
ELB improved by 0.961244
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.501
ELB improved by 0.97457
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.524
ELB improved by 0.976802
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.54
ELB improved by 0.984111
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.513
ELB improved by 1.02669
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.367
ELB improved by 1.1463
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.871
ELB improved by 1.49546
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.554
ELB improved by 2.31723
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.84
ELB improved by 2.71383
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.507
ELB improved by 2.33376
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.918
ELB improved by 1.58871
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.959
ELB improved by 0.959293
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.374
ELB improved by 0.584558
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.997
ELB improved by 0.377553
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.735
ELB improved by 0.261068
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.543
ELB improved by 0.19208
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.395
ELB improved by 0.148242
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.277
ELB improved by 0.118186
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.181
ELB improved by 0.096198
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.101
ELB improved by 0.079361
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.035
ELB improved by 0.0661068
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.98
ELB improved by 0.0555208
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.933
ELB improved by 0.0470073
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.893
ELB improved by 0.0401333
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.858
ELB improved by 0.0345603
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.828
ELB improved by 0.0300169
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.802
ELB improved by 0.0262855
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.779
ELB improved by 0.0231939
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.758
ELB improved by 0.0206079
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.74
ELB improved by 0.018424
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.723
ELB improved by 0.0165626
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.708
ELB improved by 0.0149626
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.694
ELB improved by 0.0135769
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.682
ELB improved by 0.0123687
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.671
ELB improved by 0.0113092
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.66
ELB improved by 0.0103754
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.651
ELB improved by 0.00954862
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-861.547
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-570.223
ELB improved by 291.324
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.324
ELB improved by 57.8986
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.561
ELB improved by 36.7631
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.794
ELB improved by 16.7672
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.051
ELB improved by 6.74228
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.396
ELB improved by 3.65587
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.656
ELB improved by 2.73968
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.208
ELB improved by 2.44797
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.812
ELB improved by 2.39556
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.37
ELB improved by 2.44184
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.855
ELB improved by 2.51595
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.307
ELB improved by 2.54744
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.849
ELB improved by 2.45808
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.653
ELB improved by 2.19603
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.866
ELB improved by 1.78697
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.534
ELB improved by 1.33219
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.598
ELB improved by 0.935313
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.955
ELB improved by 0.643345
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.505
ELB improved by 0.450333
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.176
ELB improved by 0.328835
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.924
ELB improved by 0.25235
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.721
ELB improved by 0.202462
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.553
ELB improved by 0.168117
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.41
ELB improved by 0.143097
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.286
ELB improved by 0.123956
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.177
ELB improved by 0.108752
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.081
ELB improved by 0.0963421
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.995
ELB improved by 0.0860184
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.918
ELB improved by 0.0773138
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.848
ELB improved by 0.0699034
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.784
ELB improved by 0.0635497
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.726
ELB improved by 0.0580727
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.673
ELB improved by 0.0533322
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.623
ELB improved by 0.049217
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.578
ELB improved by 0.0456375
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.535
ELB improved by 0.0425209
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.496
ELB improved by 0.039808
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.458
ELB improved by 0.03745
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.423
ELB improved by 0.035407
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.389
ELB improved by 0.0336463
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.357
ELB improved by 0.0321412
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.326
ELB improved by 0.0308703
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.296
ELB improved by 0.0298168
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.267
ELB improved by 0.0289678
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.239
ELB improved by 0.0283139
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.211
ELB improved by 0.0278496
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.183
ELB improved by 0.0275724
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.156
ELB improved by 0.0274832
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.128
ELB improved by 0.0275867
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.101
ELB improved by 0.0278912
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.072
ELB improved by 0.0284091
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.043
ELB improved by 0.0291579
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.013
ELB improved by 0.0301604
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.981
ELB improved by 0.0314463
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.948
ELB improved by 0.033053
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.913
ELB improved by 0.0350278
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.876
ELB improved by 0.0374294
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.836
ELB improved by 0.0403313
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.792
ELB improved by 0.0438246
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.744
ELB improved by 0.0480221
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.691
ELB improved by 0.0530635
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.631
ELB improved by 0.0591202
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.565
ELB improved by 0.0664022
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.49
ELB improved by 0.0751638
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.404
ELB improved by 0.0857096
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.306
ELB improved by 0.0983981
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.192
ELB improved by 0.113641
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.06
ELB improved by 0.1319
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.907
ELB improved by 0.153669
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.727
ELB improved by 0.179456
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.517
ELB improved by 0.209755
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.272
ELB improved by 0.245017
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.987
ELB improved by 0.285633
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.655
ELB improved by 0.331955
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.27
ELB improved by 0.384367
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.827
ELB improved by 0.443432
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.317
ELB improved by 0.510014
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.732
ELB improved by 0.584942
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.065
ELB improved by 0.66695
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.317
ELB improved by 0.747708
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.509
ELB improved by 0.808715
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.678
ELB improved by 0.830964
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.87
ELB improved by 0.807208
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.132
ELB improved by 0.738502
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.498
ELB improved by 0.633908
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.984
ELB improved by 0.513869
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.584
ELB improved by 0.40009
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.279
ELB improved by 0.30501
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.048
ELB improved by 0.231414
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.871
ELB improved by 0.176681
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.734
ELB improved by 0.136516
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.628
ELB improved by 0.106937
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.543
ELB improved by 0.0849061
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.474
ELB improved by 0.0682749
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.419
ELB improved by 0.0555448
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.373
ELB improved by 0.0456511
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.335
ELB improved by 0.037825
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.304
ELB improved by 0.0315136
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.278
ELB improved by 0.026329
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.255
ELB improved by 0.0220092
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.237
ELB improved by 0.0183837
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.222
ELB improved by 0.0153416
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.209
ELB improved by 0.0128044
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.198
ELB improved by 0.0107082
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.189
ELB improved by 0.00899347
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-883.638
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-588.002
ELB improved by 295.636
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-526.579
ELB improved by 61.4228
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.058
ELB improved by 45.5213
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.582
ELB improved by 20.4763
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.422
ELB improved by 8.15991
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.336
ELB improved by 5.08542
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.994
ELB improved by 4.34218
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.625
ELB improved by 4.36875
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.824
ELB improved by 4.80134
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.43
ELB improved by 5.39449
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.769
ELB improved by 5.66075
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.756
ELB improved by 5.01332
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.16
ELB improved by 3.59552
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.951
ELB improved by 2.20876
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.636
ELB improved by 1.31551
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.786
ELB improved by 0.850084
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.166
ELB improved by 0.620143
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.666
ELB improved by 0.499092
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.241
ELB improved by 0.425082
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.868
ELB improved by 0.373087
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.533
ELB improved by 0.334917
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.226
ELB improved by 0.307035
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.94
ELB improved by 0.286395
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.669
ELB improved by 0.270478
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.412
ELB improved by 0.257666
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.165
ELB improved by 0.24712
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.926
ELB improved by 0.23849
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.695
ELB improved by 0.231687
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.468
ELB improved by 0.226738
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.244
ELB improved by 0.223717
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.021
ELB improved by 0.222712
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.798
ELB improved by 0.223817
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.57
ELB improved by 0.227164
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.337
ELB improved by 0.232972
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.096
ELB improved by 0.241661
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.842
ELB improved by 0.254043
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.57
ELB improved by 0.271688
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.272
ELB improved by 0.297725
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.934
ELB improved by 0.33838
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.53
ELB improved by 0.403979
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.031
ELB improved by 0.498649
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.447
ELB improved by 0.584033
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.848
ELB improved by 0.598751
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.286
ELB improved by 0.562415
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.763
ELB improved by 0.522998
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.274
ELB improved by 0.488694
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.835
ELB improved by 0.439364
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.478
ELB improved by 0.357231
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.215
ELB improved by 0.262896
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.028
ELB improved by 0.186377
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.895
ELB improved by 0.133799
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.796
ELB improved by 0.0989469
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.72
ELB improved by 0.0756011
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.66
ELB improved by 0.0597971
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.611
ELB improved by 0.0492376
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.568
ELB improved by 0.0426716
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.529
ELB improved by 0.0395536
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.489
ELB improved by 0.0398853
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.445
ELB improved by 0.0441118
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.392
ELB improved by 0.0528762
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.326
ELB improved by 0.0662829
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.243
ELB improved by 0.0822731
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.149
ELB improved by 0.094683
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.054
ELB improved by 0.0945805
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.976
ELB improved by 0.078514
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.921
ELB improved by 0.0545828
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.887
ELB improved by 0.0340414
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.866
ELB improved by 0.0211676
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.852
ELB improved by 0.0143703
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.841
ELB improved by 0.0109658
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.831
ELB improved by 0.00916749
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-849.082
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.325
ELB improved by 276.757
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.793
ELB improved by 56.5318
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.676
ELB improved by 37.1172
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.712
ELB improved by 16.9637
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.865
ELB improved by 6.84712
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.763
ELB improved by 4.10191
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.09
ELB improved by 3.67279
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.186
ELB improved by 3.90478
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.772
ELB improved by 4.41362
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.757
ELB improved by 5.01503
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.349
ELB improved by 5.40751
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.208
ELB improved by 5.14127
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.149
ELB improved by 4.05887
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.438
ELB improved by 2.71143
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.748
ELB improved by 1.68989
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.656
ELB improved by 1.09241
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.876
ELB improved by 0.779885
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.246
ELB improved by 0.629232
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.665
ELB improved by 0.581622
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.052
ELB improved by 0.612436
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.401
ELB improved by 0.651267
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.791
ELB improved by 0.609978
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.246
ELB improved by 0.545238
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.745
ELB improved by 0.500738
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.325
ELB improved by 0.419766
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.018
ELB improved by 0.307085
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.793
ELB improved by 0.22532
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.61
ELB improved by 0.182707
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.449
ELB improved by 0.161123
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.3
ELB improved by 0.148786
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.16
ELB improved by 0.140619
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.025
ELB improved by 0.134553
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.895
ELB improved by 0.129683
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.77
ELB improved by 0.125548
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.648
ELB improved by 0.121872
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.53
ELB improved by 0.118466
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.414
ELB improved by 0.115194
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.302
ELB improved by 0.111955
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.194
ELB improved by 0.108681
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.088
ELB improved by 0.105331
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.987
ELB improved by 0.101886
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.888
ELB improved by 0.098346
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.793
ELB improved by 0.0947279
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.702
ELB improved by 0.0910592
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.615
ELB improved by 0.087375
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.531
ELB improved by 0.0837146
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.451
ELB improved by 0.0801181
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.375
ELB improved by 0.0766239
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.301
ELB improved by 0.0732674
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.231
ELB improved by 0.0700793
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.164
ELB improved by 0.0670858
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.1
ELB improved by 0.0643077
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.038
ELB improved by 0.0617612
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.979
ELB improved by 0.0594587
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.921
ELB improved by 0.0574088
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.866
ELB improved by 0.055618
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.812
ELB improved by 0.0540907
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.759
ELB improved by 0.052831
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.707
ELB improved by 0.051843
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.656
ELB improved by 0.0511318
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.605
ELB improved by 0.0507047
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.554
ELB improved by 0.0505717
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.504
ELB improved by 0.0507465
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.452
ELB improved by 0.0512477
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.4
ELB improved by 0.0520994
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.347
ELB improved by 0.0533326
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.292
ELB improved by 0.054986
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.235
ELB improved by 0.0571069
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.175
ELB improved by 0.059752
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.112
ELB improved by 0.0629879
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.045
ELB improved by 0.0668905
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.974
ELB improved by 0.0715442
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.897
ELB improved by 0.0770386
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.813
ELB improved by 0.0834644
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.722
ELB improved by 0.0909066
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.623
ELB improved by 0.0994355
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.514
ELB improved by 0.109095
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.394
ELB improved by 0.119885
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.262
ELB improved by 0.131749
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.118
ELB improved by 0.144552
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.96
ELB improved by 0.158073
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.788
ELB improved by 0.17202
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.601
ELB improved by 0.186095
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.401
ELB improved by 0.200143
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.187
ELB improved by 0.214452
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.956
ELB improved by 0.230369
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.705
ELB improved by 0.25179
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.415
ELB improved by 0.289373
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.045
ELB improved by 0.369917
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.521
ELB improved by 0.524747
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.868
ELB improved by 0.65216
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.295
ELB improved by 0.57389
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.894
ELB improved by 0.400685
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.633
ELB improved by 0.260667
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.461
ELB improved by 0.172489
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.341
ELB improved by 0.120246
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.252
ELB improved by 0.0886026
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.183
ELB improved by 0.0685709
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.128
ELB improved by 0.0554333
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.081
ELB improved by 0.0466554
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.04
ELB improved by 0.0407788
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.004
ELB improved by 0.0369038
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.969
ELB improved by 0.034444
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.936
ELB improved by 0.0330033
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.904
ELB improved by 0.0323069
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.872
ELB improved by 0.0321615
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.839
ELB improved by 0.032431
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.806
ELB improved by 0.0330216
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.772
ELB improved by 0.0338729
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.737
ELB improved by 0.0349527
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.701
ELB improved by 0.0362516
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.663
ELB improved by 0.0377779
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.624
ELB improved by 0.039551
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.582
ELB improved by 0.0415949
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.538
ELB improved by 0.0439327
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.492
ELB improved by 0.0465829
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.442
ELB improved by 0.0495579
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.389
ELB improved by 0.0528635
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.333
ELB improved by 0.0564992
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.272
ELB improved by 0.0604592
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.208
ELB improved by 0.0647321
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.138
ELB improved by 0.0693021
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.064
ELB improved by 0.0741504
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.985
ELB improved by 0.0792578
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.9
ELB improved by 0.0846087
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.81
ELB improved by 0.0901963
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.714
ELB improved by 0.096029
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.612
ELB improved by 0.102136
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.503
ELB improved by 0.108576
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.388
ELB improved by 0.115436
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.265
ELB improved by 0.12284
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.134
ELB improved by 0.130945
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.994
ELB improved by 0.139935
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.844
ELB improved by 0.150015
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.683
ELB improved by 0.161396
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.508
ELB improved by 0.174279
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.32
ELB improved by 0.188823
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.115
ELB improved by 0.205117
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.891
ELB improved by 0.223132
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.649
ELB improved by 0.242666
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.385
ELB improved by 0.263284
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.101
ELB improved by 0.284267
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.797
ELB improved by 0.30459
iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.474
ELB improved by 0.322962
iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.136
ELB improved by 0.337952
iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.787
ELB improved by 0.348222
iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.435
ELB improved by 0.352809
iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.083
ELB improved by 0.351357
iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.739
ELB improved by 0.3442
iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.407
ELB improved by 0.332177
iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.091
ELB improved by 0.316265
iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.793
ELB improved by 0.297226
iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.518
ELB improved by 0.275582
iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.266
ELB improved by 0.251925
iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.039
ELB improved by 0.227223
iteration 157
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.836
ELB improved by 0.202716
iteration 158
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.656
ELB improved by 0.17952
iteration 159
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.498
ELB improved by 0.158343
iteration 160
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.359
ELB improved by 0.139468
iteration 161
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.236
ELB improved by 0.122881
iteration 162
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.127
ELB improved by 0.108415
iteration 163
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.031
ELB improved by 0.095841
iteration 164
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.947
ELB improved by 0.0849271
iteration 165
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.871
ELB improved by 0.0754539
iteration 166
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.804
ELB improved by 0.0672255
iteration 167
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.744
ELB improved by 0.06007
iteration 168
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.69
ELB improved by 0.0538385
iteration 169
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.642
ELB improved by 0.0484032
iteration 170
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.598
ELB improved by 0.0436544
iteration 171
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.558
ELB improved by 0.0394981
iteration 172
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.523
ELB improved by 0.0358539
iteration 173
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.49
ELB improved by 0.0326524
iteration 174
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.46
ELB improved by 0.0298334
iteration 175
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.433
ELB improved by 0.027344
iteration 176
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.408
ELB improved by 0.0251372
iteration 177
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.384
ELB improved by 0.0231707
iteration 178
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.363
ELB improved by 0.0214061
iteration 179
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.343
ELB improved by 0.0198086
iteration 180
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.325
ELB improved by 0.0183476
iteration 181
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.308
ELB improved by 0.016997
iteration 182
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.292
ELB improved by 0.0157359
iteration 183
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.278
ELB improved by 0.01455
iteration 184
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.264
ELB improved by 0.0134306
iteration 185
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.252
ELB improved by 0.0123748
iteration 186
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.24
ELB improved by 0.0113834
iteration 187
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.23
ELB improved by 0.0104593
iteration 188
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.22
ELB improved by 0.00960531
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
1.107 0.111 1.274
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.013 | 0.010 | 0.036 | |
| getPIPs | 0.011 | 0.011 | 0.027 | |
| graper | 0.021 | 0.014 | 0.043 | |
| makeExampleData | 0.002 | 0.000 | 0.003 | |
| makeExampleDataWithUnequalGroups | 0.003 | 0.000 | 0.003 | |
| plotELBO | 0.114 | 0.012 | 0.146 | |
| plotGroupPenalties | 0.361 | 0.012 | 0.408 | |
| plotPosterior | 0.329 | 0.022 | 0.370 | |
| predict.graper | 0.219 | 0.058 | 0.304 | |
| print.graper | 0.011 | 0.009 | 0.021 | |