Britta Velten
| Snapshot Date: 2026-02-01 13:40 -0500 (Sun, 01 Feb 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-02 11:32 -0500 (Mon, 02 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4852 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-02-02 00:09:35 -0500 (Mon, 02 Feb 2026) |
| EndedAt: 2026-02-02 00:11:05 -0500 (Mon, 02 Feb 2026) |
| EllapsedTime: 90.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-863.28
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-561.269
ELB improved by 302.011
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.392
ELB improved by 57.8774
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.633
ELB improved by 34.7591
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.833
ELB improved by 13.8
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.131
ELB improved by 6.702
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.717
ELB improved by 5.41364
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.301
ELB improved by 5.41647
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.734
ELB improved by 5.56614
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.542
ELB improved by 5.19246
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.397
ELB improved by 4.14531
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.522
ELB improved by 2.87488
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.671
ELB improved by 1.8509
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.477
ELB improved by 1.19434
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.648
ELB improved by 0.829017
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.994
ELB improved by 0.653838
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.387
ELB improved by 0.606386
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.729
ELB improved by 0.658053
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.97
ELB improved by 0.759385
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.156
ELB improved by 0.814208
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.37
ELB improved by 0.785961
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.688
ELB improved by 0.68212
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.145
ELB improved by 0.542217
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.699
ELB improved by 0.446635
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.296
ELB improved by 0.403217
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.91
ELB improved by 0.38548
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.534
ELB improved by 0.376056
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.167
ELB improved by 0.367478
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.81
ELB improved by 0.356885
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.466
ELB improved by 0.343378
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.139
ELB improved by 0.327016
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.831
ELB improved by 0.308358
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.543
ELB improved by 0.28818
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.275
ELB improved by 0.267274
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.029
ELB improved by 0.246331
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.803
ELB improved by 0.225881
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.597
ELB improved by 0.2063
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.409
ELB improved by 0.187823
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.239
ELB improved by 0.170586
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.084
ELB improved by 0.154647
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.944
ELB improved by 0.140012
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.817
ELB improved by 0.126654
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.703
ELB improved by 0.114519
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.599
ELB improved by 0.103536
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.506
ELB improved by 0.0936231
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.421
ELB improved by 0.0846951
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.344
ELB improved by 0.0766654
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.275
ELB improved by 0.0694506
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.212
ELB improved by 0.0629725
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.155
ELB improved by 0.0571588
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.103
ELB improved by 0.0519438
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.055
ELB improved by 0.0472678
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.012
ELB improved by 0.0430768
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.973
ELB improved by 0.0393222
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.937
ELB improved by 0.0359603
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.904
ELB improved by 0.032952
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.874
ELB improved by 0.0302625
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.846
ELB improved by 0.0278615
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.82
ELB improved by 0.0257232
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.796
ELB improved by 0.0238266
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.774
ELB improved by 0.022157
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.754
ELB improved by 0.0207078
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.734
ELB improved by 0.0194845
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.716
ELB improved by 0.0185133
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.698
ELB improved by 0.0178574
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.68
ELB improved by 0.017652
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.662
ELB improved by 0.0181819
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.642
ELB improved by 0.0200584
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.617
ELB improved by 0.0246348
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.582
ELB improved by 0.0349427
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.525
ELB improved by 0.0573161
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.424
ELB improved by 0.100877
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.263
ELB improved by 0.160609
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.075
ELB improved by 0.18851
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.92
ELB improved by 0.154404
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.817
ELB improved by 0.103357
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.749
ELB improved by 0.067645
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.702
ELB improved by 0.0471094
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.666
ELB improved by 0.0358698
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.636
ELB improved by 0.0301495
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.608
ELB improved by 0.0281895
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.579
ELB improved by 0.0296076
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.543
ELB improved by 0.0352394
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.496
ELB improved by 0.0474131
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.426
ELB improved by 0.0699533
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.321
ELB improved by 0.104674
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.182
ELB improved by 0.139435
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.036
ELB improved by 0.145828
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.917
ELB improved by 0.11869
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.832
ELB improved by 0.0848747
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.772
ELB improved by 0.0601932
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.728
ELB improved by 0.0442988
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.694
ELB improved by 0.0338646
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.667
ELB improved by 0.0266966
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.646
ELB improved by 0.0215865
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.628
ELB improved by 0.0178337
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.613
ELB improved by 0.0149993
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.6
ELB improved by 0.0127975
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.589
ELB improved by 0.0110394
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.58
ELB improved by 0.00960081
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-883.081
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-566.446
ELB improved by 316.635
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.797
ELB improved by 54.6488
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.281
ELB improved by 32.516
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.506
ELB improved by 13.7757
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.76
ELB improved by 5.74596
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.547
ELB improved by 3.21288
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.235
ELB improved by 2.312
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.295
ELB improved by 1.94035
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.503
ELB improved by 1.79199
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.765
ELB improved by 1.73738
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.037
ELB improved by 1.72848
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.286
ELB improved by 1.75083
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.488
ELB improved by 1.79795
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.631
ELB improved by 1.85689
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.73
ELB improved by 1.90071
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.832
ELB improved by 1.89785
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.001
ELB improved by 1.83184
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.316
ELB improved by 1.68442
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.886
ELB improved by 1.43013
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.743
ELB improved by 1.14318
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.814
ELB improved by 0.929311
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.015
ELB improved by 0.798986
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.289
ELB improved by 0.725387
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.599
ELB improved by 0.690478
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.909
ELB improved by 0.68932
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.183
ELB improved by 0.726373
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.373
ELB improved by 0.810239
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.435
ELB improved by 0.93809
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.355
ELB improved by 1.0792
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.114
ELB improved by 1.24134
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.641
ELB improved by 1.47303
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.099
ELB improved by 1.54202
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.753
ELB improved by 1.34648
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.65
ELB improved by 1.10231
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.774
ELB improved by 0.87581
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.093
ELB improved by 0.681178
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.564
ELB improved by 0.529224
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.14
ELB improved by 0.423892
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.775
ELB improved by 0.365362
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.415
ELB improved by 0.360066
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.985
ELB improved by 0.430026
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.422
ELB improved by 0.562719
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.831
ELB improved by 0.590578
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.361
ELB improved by 0.470392
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.012
ELB improved by 0.349209
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.749
ELB improved by 0.262425
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.553
ELB improved by 0.196068
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.409
ELB improved by 0.143929
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.304
ELB improved by 0.1053
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.226
ELB improved by 0.0784449
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.165
ELB improved by 0.0602996
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.117
ELB improved by 0.0479584
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.078
ELB improved by 0.0393204
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.045
ELB improved by 0.0330396
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.017
ELB improved by 0.0282928
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.992
ELB improved by 0.0245797
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.971
ELB improved by 0.021592
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.951
ELB improved by 0.0191343
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.934
ELB improved by 0.0170783
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.919
ELB improved by 0.0153368
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.905
ELB improved by 0.0138476
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.893
ELB improved by 0.0125649
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.881
ELB improved by 0.0114538
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.871
ELB improved by 0.0104868
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.861
ELB improved by 0.00964191
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-903.932
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-610.457
ELB improved by 293.476
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-553.756
ELB improved by 56.7009
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-505.314
ELB improved by 48.4421
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.331
ELB improved by 27.983
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.638
ELB improved by 11.6932
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.781
ELB improved by 5.85624
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.103
ELB improved by 4.67782
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.518
ELB improved by 4.58517
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.713
ELB improved by 4.80557
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.707
ELB improved by 5.00618
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.796
ELB improved by 4.91012
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.426
ELB improved by 4.37029
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.9
ELB improved by 3.52581
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.22
ELB improved by 2.68024
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.229
ELB improved by 1.9913
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.78
ELB improved by 1.44872
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.73
ELB improved by 1.04996
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.942
ELB improved by 0.787821
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.316
ELB improved by 0.625921
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.789
ELB improved by 0.527037
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.324
ELB improved by 0.465224
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.899
ELB improved by 0.424745
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.503
ELB improved by 0.396541
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.127
ELB improved by 0.375449
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.769
ELB improved by 0.358543
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.425
ELB improved by 0.344229
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.093
ELB improved by 0.331766
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.772
ELB improved by 0.320965
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.46
ELB improved by 0.311976
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.155
ELB improved by 0.30512
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.854
ELB improved by 0.300747
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.555
ELB improved by 0.299133
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.255
ELB improved by 0.3004
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.95
ELB improved by 0.304455
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.639
ELB improved by 0.310932
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.32
ELB improved by 0.319147
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.992
ELB improved by 0.328072
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.656
ELB improved by 0.336367
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.313
ELB improved by 0.342516
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.968
ELB improved by 0.345069
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.625
ELB improved by 0.342958
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.289
ELB improved by 0.33576
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.965
ELB improved by 0.323769
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.658
ELB improved by 0.307791
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.369
ELB improved by 0.288777
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.101
ELB improved by 0.267492
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.857
ELB improved by 0.244446
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.637
ELB improved by 0.220082
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.442
ELB improved by 0.195032
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.272
ELB improved by 0.170168
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.125
ELB improved by 0.146447
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.001
ELB improved by 0.12466
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.895
ELB improved by 0.105291
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.807
ELB improved by 0.0885022
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.733
ELB improved by 0.0742123
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.67
ELB improved by 0.0621977
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.618
ELB improved by 0.0521734
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.574
ELB improved by 0.0438462
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.537
ELB improved by 0.0369435
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.506
ELB improved by 0.031225
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.48
ELB improved by 0.0264857
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.457
ELB improved by 0.0225536
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.438
ELB improved by 0.0192862
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.421
ELB improved by 0.0165662
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.407
ELB improved by 0.0142973
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.395
ELB improved by 0.0124006
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.384
ELB improved by 0.0108114
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.374
ELB improved by 0.0094768
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-873.647
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-565.506
ELB improved by 308.141
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-506.906
ELB improved by 58.5997
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.389
ELB improved by 35.5172
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.346
ELB improved by 16.0432
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.085
ELB improved by 7.26141
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.041
ELB improved by 4.04411
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.188
ELB improved by 2.85236
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.766
ELB improved by 2.42201
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.502
ELB improved by 2.2642
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.303
ELB improved by 2.19945
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.147
ELB improved by 2.1553
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.053
ELB improved by 2.09386
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.064
ELB improved by 1.98908
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.242
ELB improved by 1.82273
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.648
ELB improved by 1.5933
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.324
ELB improved by 1.32439
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.269
ELB improved by 1.05459
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.454
ELB improved by 0.815719
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.832
ELB improved by 0.621701
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.36
ELB improved by 0.472263
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.999
ELB improved by 0.360845
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.719
ELB improved by 0.2798
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.497
ELB improved by 0.222164
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.315
ELB improved by 0.181861
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.161
ELB improved by 0.153798
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.027
ELB improved by 0.134033
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.907
ELB improved by 0.119758
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.798
ELB improved by 0.109088
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.697
ELB improved by 0.100807
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.603
ELB improved by 0.0941399
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.515
ELB improved by 0.0885915
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.431
ELB improved by 0.0838409
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.351
ELB improved by 0.0796733
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.275
ELB improved by 0.0759407
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.203
ELB improved by 0.0725367
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.133
ELB improved by 0.0693831
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.067
ELB improved by 0.0664212
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.003
ELB improved by 0.0636068
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.942
ELB improved by 0.0609067
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.884
ELB improved by 0.0582972
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.828
ELB improved by 0.055762
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.775
ELB improved by 0.0532912
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.724
ELB improved by 0.0508799
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.676
ELB improved by 0.0485275
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.629
ELB improved by 0.0462362
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.585
ELB improved by 0.0440103
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.544
ELB improved by 0.0418552
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.504
ELB improved by 0.0397766
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.466
ELB improved by 0.0377799
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.43
ELB improved by 0.0358699
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.396
ELB improved by 0.0340502
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.364
ELB improved by 0.0323233
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.333
ELB improved by 0.0306903
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.304
ELB improved by 0.0291512
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.276
ELB improved by 0.0277048
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.25
ELB improved by 0.0263492
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.225
ELB improved by 0.0250815
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.201
ELB improved by 0.0238984
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.178
ELB improved by 0.0227961
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.156
ELB improved by 0.0217706
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.135
ELB improved by 0.0208177
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.116
ELB improved by 0.0199335
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.096
ELB improved by 0.0191137
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.078
ELB improved by 0.0183544
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.06
ELB improved by 0.0176518
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.043
ELB improved by 0.0170024
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.027
ELB improved by 0.0164028
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.011
ELB improved by 0.0158498
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.996
ELB improved by 0.0153405
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.981
ELB improved by 0.0148722
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.967
ELB improved by 0.0144426
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.952
ELB improved by 0.0140495
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.939
ELB improved by 0.0136908
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.925
ELB improved by 0.0133649
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.912
ELB improved by 0.0130702
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.9
ELB improved by 0.0128055
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.887
ELB improved by 0.0125697
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.875
ELB improved by 0.012362
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.862
ELB improved by 0.0121817
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.85
ELB improved by 0.0120286
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.838
ELB improved by 0.0119024
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.827
ELB improved by 0.0118036
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.815
ELB improved by 0.0117325
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.803
ELB improved by 0.01169
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.792
ELB improved by 0.0116776
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.78
ELB improved by 0.011697
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.768
ELB improved by 0.0117507
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.756
ELB improved by 0.0118421
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.744
ELB improved by 0.0119755
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.732
ELB improved by 0.0121564
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.72
ELB improved by 0.0123921
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.707
ELB improved by 0.0126922
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.694
ELB improved by 0.013069
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.68
ELB improved by 0.0135389
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.666
ELB improved by 0.0141236
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.651
ELB improved by 0.014852
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.636
ELB improved by 0.0157624
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.619
ELB improved by 0.0169055
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.6
ELB improved by 0.0183473
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.58
ELB improved by 0.0201715
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.558
ELB improved by 0.0224777
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.532
ELB improved by 0.0253729
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.504
ELB improved by 0.0289466
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.47
ELB improved by 0.0332299
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.432
ELB improved by 0.038144
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.389
ELB improved by 0.0434826
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.34
ELB improved by 0.0489868
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.285
ELB improved by 0.0545315
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.225
ELB improved by 0.0603165
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.158
ELB improved by 0.0669093
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.083
ELB improved by 0.075117
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.997
ELB improved by 0.0858135
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.897
ELB improved by 0.0997694
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.78
ELB improved by 0.117335
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.642
ELB improved by 0.137823
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.483
ELB improved by 0.158924
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.306
ELB improved by 0.177209
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.116
ELB improved by 0.190104
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.919
ELB improved by 0.197262
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.719
ELB improved by 0.199718
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.52
ELB improved by 0.198515
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.326
ELB improved by 0.194462
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.137
ELB improved by 0.188497
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.956
ELB improved by 0.181836
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.78
ELB improved by 0.175832
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.608
ELB improved by 0.171607
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.439
ELB improved by 0.169344
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.271
ELB improved by 0.167244
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.11
ELB improved by 0.161318
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.962
ELB improved by 0.148064
iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.834
ELB improved by 0.12839
iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.727
ELB improved by 0.107031
iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.639
ELB improved by 0.0881347
iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.565
ELB improved by 0.073172
iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.504
ELB improved by 0.0618726
iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.45
ELB improved by 0.0534848
iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.403
ELB improved by 0.047346
iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.36
ELB improved by 0.0430137
iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.319
ELB improved by 0.0402606
iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.28
ELB improved by 0.0390638
iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.241
ELB improved by 0.0396418
iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.198
ELB improved by 0.0425824
iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.149
ELB improved by 0.0491632
iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.087
ELB improved by 0.062108
iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412
ELB improved by 0.0873435
iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.862
ELB improved by 0.137631
iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.625
ELB improved by 0.236508
iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.219
ELB improved by 0.406048
iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.606
ELB improved by 0.613423
iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.872
ELB improved by 0.733887
iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.224
ELB improved by 0.647823
iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.789
ELB improved by 0.435604
iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.536
ELB improved by 0.252388
iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.398
ELB improved by 0.138588
iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.322
ELB improved by 0.0758447
iteration 157
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.279
ELB improved by 0.0428672
iteration 158
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.253
ELB improved by 0.0257245
iteration 159
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.237
ELB improved by 0.0166396
iteration 160
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.225
ELB improved by 0.0116151
iteration 161
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.216
ELB improved by 0.00867454
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.332 0.198 2.520
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.052 | 0.020 | 0.073 | |
| getPIPs | 0.053 | 0.010 | 0.062 | |
| graper | 0.086 | 0.014 | 0.100 | |
| makeExampleData | 0.011 | 0.000 | 0.010 | |
| makeExampleDataWithUnequalGroups | 0.010 | 0.003 | 0.013 | |
| plotELBO | 0.319 | 0.027 | 0.346 | |
| plotGroupPenalties | 1.127 | 0.046 | 1.175 | |
| plotPosterior | 0.627 | 0.020 | 0.647 | |
| predict.graper | 2.057 | 0.077 | 2.134 | |
| print.graper | 0.047 | 0.013 | 0.061 | |