Britta Velten
| Snapshot Date: 2026-02-04 13:40 -0500 (Wed, 04 Feb 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: devel |
| git_last_commit: 95474d7 |
| git_last_commit_date: 2025-10-29 10:49:21 -0500 (Wed, 29 Oct 2025) |
| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-05 11:32 -0500 (Thu, 05 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4852 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 922/2347 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.27.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.27.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz |
| StartedAt: 2026-02-05 00:11:30 -0500 (Thu, 05 Feb 2026) |
| EndedAt: 2026-02-05 00:13:01 -0500 (Thu, 05 Feb 2026) |
| EllapsedTime: 91.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2026-01-15 r89304)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.27.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-891.589
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.057
ELB improved by 322.532
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-509.894
ELB improved by 59.1627
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.594
ELB improved by 34.2997
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.331
ELB improved by 12.2631
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.325
ELB improved by 5.00661
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.667
ELB improved by 3.65812
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.256
ELB improved by 3.41071
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.867
ELB improved by 3.38911
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.417
ELB improved by 3.45008
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.876
ELB improved by 3.54067
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.279
ELB improved by 3.59678
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.759
ELB improved by 3.52034
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.529
ELB improved by 3.2301
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.804
ELB improved by 2.72487
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.748
ELB improved by 2.05571
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.356
ELB improved by 1.39178
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.433
ELB improved by 0.923942
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.782
ELB improved by 0.650685
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.288
ELB improved by 0.493605
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.886
ELB improved by 0.402655
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.533
ELB improved by 0.353026
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.202
ELB improved by 0.330203
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.877
ELB improved by 0.32541
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.543
ELB improved by 0.333948
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.189
ELB improved by 0.353774
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.805
ELB improved by 0.38442
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.379
ELB improved by 0.42629
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.898
ELB improved by 0.480176
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.352
ELB improved by 0.546822
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.725
ELB improved by 0.626446
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.007
ELB improved by 0.718165
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.188
ELB improved by 0.819329
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.263
ELB improved by 0.924752
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.237
ELB improved by 1.02577
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.128
ELB improved by 1.10906
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.972
ELB improved by 1.15648
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.823
ELB improved by 1.14877
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.747
ELB improved by 1.07562
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.801
ELB improved by 0.946535
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.011
ELB improved by 0.789804
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.374
ELB improved by 0.6364
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.871
ELB improved by 0.503771
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.476
ELB improved by 0.394204
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.171
ELB improved by 0.305396
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.934
ELB improved by 0.237443
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.743
ELB improved by 0.190295
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.582
ELB improved by 0.161697
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.432
ELB improved by 0.1494
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.279
ELB improved by 0.153239
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.105
ELB improved by 0.174327
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.895
ELB improved by 0.209213
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.652
ELB improved by 0.243359
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.389
ELB improved by 0.26286
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.124
ELB improved by 0.264982
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.887
ELB improved by 0.237394
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.706
ELB improved by 0.181028
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.576
ELB improved by 0.129561
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.473
ELB improved by 0.102784
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.373
ELB improved by 0.100479
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.25
ELB improved by 0.122926
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.076
ELB improved by 0.173596
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.84
ELB improved by 0.236206
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.582
ELB improved by 0.258179
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.358
ELB improved by 0.224004
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.179
ELB improved by 0.179147
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.033
ELB improved by 0.145647
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.918
ELB improved by 0.114968
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.836
ELB improved by 0.0825961
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.781
ELB improved by 0.0545626
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.746
ELB improved by 0.0352665
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.722
ELB improved by 0.0236977
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.705
ELB improved by 0.0170791
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.692
ELB improved by 0.013227
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.681
ELB improved by 0.0108696
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.672
ELB improved by 0.00933939
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-849.546
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-588.902
ELB improved by 260.643
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-524.536
ELB improved by 64.3662
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.384
ELB improved by 47.1527
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.225
ELB improved by 24.159
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.148
ELB improved by 10.0767
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.307
ELB improved by 4.84121
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.155
ELB improved by 3.15188
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.666
ELB improved by 2.48889
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.447
ELB improved by 2.2186
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.315
ELB improved by 2.13237
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.171
ELB improved by 2.14369
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.944
ELB improved by 2.22677
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.573
ELB improved by 2.37121
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.032
ELB improved by 2.54165
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.376
ELB improved by 2.65593
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.749
ELB improved by 2.62672
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.325
ELB improved by 2.4236
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.289
ELB improved by 2.03611
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.787
ELB improved by 1.50258
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.779
ELB improved by 1.00765
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.108
ELB improved by 0.67075
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.634
ELB improved by 0.474032
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.272
ELB improved by 0.362001
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.98
ELB improved by 0.292111
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.737
ELB improved by 0.243236
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.528
ELB improved by 0.208602
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.343
ELB improved by 0.185719
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.171
ELB improved by 0.171946
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.006
ELB improved by 0.164721
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.844
ELB improved by 0.162253
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.68
ELB improved by 0.163546
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.512
ELB improved by 0.168182
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.336
ELB improved by 0.176141
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.148
ELB improved by 0.187704
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.945
ELB improved by 0.203411
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.721
ELB improved by 0.224029
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.47
ELB improved by 0.250563
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.186
ELB improved by 0.284453
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.858
ELB improved by 0.328063
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.472
ELB improved by 0.385137
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.012
ELB improved by 0.4601
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.457
ELB improved by 0.555175
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.791
ELB improved by 0.666364
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.009
ELB improved by 0.781677
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.123
ELB improved by 0.886385
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.147
ELB improved by 0.975351
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.09
ELB improved by 1.05755
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.927
ELB improved by 1.16264
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.543
ELB improved by 1.38392
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.734
ELB improved by 1.8092
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.957
ELB improved by 1.77738
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.682
ELB improved by 1.27446
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.734
ELB improved by 0.947688
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.019
ELB improved by 0.715048
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.488
ELB improved by 0.531386
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.097
ELB improved by 0.391321
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.807
ELB improved by 0.290015
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.588
ELB improved by 0.218558
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.421
ELB improved by 0.167417
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.291
ELB improved by 0.129605
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.19
ELB improved by 0.101029
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.111
ELB improved by 0.0793744
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.048
ELB improved by 0.0630843
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.997
ELB improved by 0.0508896
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.955
ELB improved by 0.0417255
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.92
ELB improved by 0.0347514
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.891
ELB improved by 0.0293484
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.866
ELB improved by 0.0250824
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.844
ELB improved by 0.0216557
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.825
ELB improved by 0.0188637
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.809
ELB improved by 0.0165637
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.794
ELB improved by 0.0146529
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.781
ELB improved by 0.0130554
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.769
ELB improved by 0.0117131
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.759
ELB improved by 0.0105806
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.749
ELB improved by 0.00962172
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-907.931
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.159
ELB improved by 325.772
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-522.403
ELB improved by 59.7565
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-484.015
ELB improved by 38.3876
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.823
ELB improved by 16.1925
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.585
ELB improved by 6.23834
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.266
ELB improved by 4.3186
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.424
ELB improved by 3.84149
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.676
ELB improved by 3.74883
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.944
ELB improved by 3.73145
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.369
ELB improved by 3.57496
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.214
ELB improved by 3.15541
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.708
ELB improved by 2.50605
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.9
ELB improved by 1.80726
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.665
ELB improved by 1.23568
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.817
ELB improved by 0.84738
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.211
ELB improved by 0.606229
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.754
ELB improved by 0.457472
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.392
ELB improved by 0.361545
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.096
ELB improved by 0.295723
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.849
ELB improved by 0.247844
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.637
ELB improved by 0.21137
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.455
ELB improved by 0.182647
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.295
ELB improved by 0.159501
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.155
ELB improved by 0.14055
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.03
ELB improved by 0.124852
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.918
ELB improved by 0.111724
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.817
ELB improved by 0.100655
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.726
ELB improved by 0.0912523
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.643
ELB improved by 0.0832089
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.567
ELB improved by 0.0762834
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.496
ELB improved by 0.070285
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.431
ELB improved by 0.0650611
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.371
ELB improved by 0.0604895
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.314
ELB improved by 0.0564707
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.261
ELB improved by 0.0529237
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.212
ELB improved by 0.0497815
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.165
ELB improved by 0.0469888
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.12
ELB improved by 0.0444991
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.078
ELB improved by 0.0422733
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.038
ELB improved by 0.0402782
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.999
ELB improved by 0.0384856
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.962
ELB improved by 0.0368713
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.927
ELB improved by 0.0354146
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.893
ELB improved by 0.0340973
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.86
ELB improved by 0.0329038
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.828
ELB improved by 0.0318205
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.797
ELB improved by 0.0308354
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.767
ELB improved by 0.0299381
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.738
ELB improved by 0.0291192
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.71
ELB improved by 0.0283706
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.682
ELB improved by 0.027685
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.655
ELB improved by 0.0270559
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.628
ELB improved by 0.0264775
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.603
ELB improved by 0.0259446
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.577
ELB improved by 0.0254525
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.552
ELB improved by 0.0249971
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.527
ELB improved by 0.0245744
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.503
ELB improved by 0.024181
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.479
ELB improved by 0.0238138
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.456
ELB improved by 0.02347
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.433
ELB improved by 0.0231469
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.41
ELB improved by 0.0228423
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.387
ELB improved by 0.0225541
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.365
ELB improved by 0.0222805
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.343
ELB improved by 0.0220199
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.321
ELB improved by 0.0217709
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.3
ELB improved by 0.0215324
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.279
ELB improved by 0.0213035
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.257
ELB improved by 0.0210834
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.237
ELB improved by 0.0208715
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.216
ELB improved by 0.0206676
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.195
ELB improved by 0.0204714
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.175
ELB improved by 0.0202829
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.155
ELB improved by 0.0201022
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.135
ELB improved by 0.0199295
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.115
ELB improved by 0.0197652
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.096
ELB improved by 0.0196094
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.076
ELB improved by 0.0194627
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.057
ELB improved by 0.0193253
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.038
ELB improved by 0.0191976
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.019
ELB improved by 0.01908
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428
ELB improved by 0.0189726
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.981
ELB improved by 0.0188756
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.962
ELB improved by 0.018789
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.943
ELB improved by 0.0187128
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.925
ELB improved by 0.0186467
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.906
ELB improved by 0.0185904
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.888
ELB improved by 0.0185434
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.869
ELB improved by 0.0185051
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.851
ELB improved by 0.0184746
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.832
ELB improved by 0.018451
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.814
ELB improved by 0.0184333
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.795
ELB improved by 0.0184203
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.777
ELB improved by 0.0184106
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.758
ELB improved by 0.0184029
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.74
ELB improved by 0.0183955
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.722
ELB improved by 0.0183868
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.703
ELB improved by 0.0183753
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.685
ELB improved by 0.0183591
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.667
ELB improved by 0.0183365
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.648
ELB improved by 0.0183057
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.63
ELB improved by 0.018265
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.612
ELB improved by 0.0182127
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.594
ELB improved by 0.0181471
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.576
ELB improved by 0.0180666
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.558
ELB improved by 0.0179696
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.54
ELB improved by 0.0178549
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.522
ELB improved by 0.0177211
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.505
ELB improved by 0.017567
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.487
ELB improved by 0.0173918
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.47
ELB improved by 0.0171944
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.453
ELB improved by 0.0169743
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.436
ELB improved by 0.016731
iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.42
ELB improved by 0.0164641
iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.404
ELB improved by 0.0161736
iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.388
ELB improved by 0.0158596
iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.372
ELB improved by 0.0155225
iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.357
ELB improved by 0.0151629
iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.342
ELB improved by 0.0147819
iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.328
ELB improved by 0.0143808
iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.314
ELB improved by 0.013961
iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.3
ELB improved by 0.0135247
iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.287
ELB improved by 0.0130739
iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.275
ELB improved by 0.0126112
iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.263
ELB improved by 0.0121394
iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.251
ELB improved by 0.0116615
iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.24
ELB improved by 0.0111806
iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.229
ELB improved by 0.0106997
iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.219
ELB improved by 0.010222
iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.209
ELB improved by 0.00975058
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-875.228
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-587.135
ELB improved by 288.093
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.342
ELB improved by 59.7923
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.471
ELB improved by 44.8711
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.823
ELB improved by 23.6479
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.676
ELB improved by 10.1472
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.037
ELB improved by 5.63913
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.934
ELB improved by 4.10331
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.473
ELB improved by 3.46048
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.295
ELB improved by 3.17869
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.29
ELB improved by 3.0045
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.468
ELB improved by 2.82232
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.889
ELB improved by 2.57853
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.628
ELB improved by 2.26073
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.739
ELB improved by 1.88974
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.233
ELB improved by 1.50587
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.082
ELB improved by 1.15127
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.226
ELB improved by 0.855547
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.596
ELB improved by 0.629815
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.127
ELB improved by 0.468974
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.768
ELB improved by 0.358828
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.485
ELB improved by 0.283825
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.253
ELB improved by 0.231599
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.059
ELB improved by 0.193838
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.894
ELB improved by 0.1654
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.751
ELB improved by 0.143185
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.625
ELB improved by 0.125315
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.515
ELB improved by 0.110618
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.416
ELB improved by 0.0983296
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.328
ELB improved by 0.0879323
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.249
ELB improved by 0.0790588
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.178
ELB improved by 0.0714392
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.113
ELB improved by 0.0648684
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.054
ELB improved by 0.0591865
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413
ELB improved by 0.0542654
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.95
ELB improved by 0.0500003
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.903
ELB improved by 0.0463039
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.86
ELB improved by 0.0431028
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.82
ELB improved by 0.0403347
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.782
ELB improved by 0.0379463
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.746
ELB improved by 0.0358924
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.712
ELB improved by 0.0341344
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.679
ELB improved by 0.0326399
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.648
ELB improved by 0.0313815
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.617
ELB improved by 0.0303365
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.588
ELB improved by 0.0294864
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.559
ELB improved by 0.0288157
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.531
ELB improved by 0.0283126
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.503
ELB improved by 0.0279674
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.475
ELB improved by 0.0277732
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.447
ELB improved by 0.0277251
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.42
ELB improved by 0.02782
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.392
ELB improved by 0.0280566
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.363
ELB improved by 0.0284351
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.334
ELB improved by 0.0289573
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.305
ELB improved by 0.0296261
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.274
ELB improved by 0.0304457
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.243
ELB improved by 0.0314215
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.21
ELB improved by 0.0325599
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.176
ELB improved by 0.0338681
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.141
ELB improved by 0.0353543
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.104
ELB improved by 0.0370272
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.065
ELB improved by 0.0388964
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.024
ELB improved by 0.0409717
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.981
ELB improved by 0.0432636
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.935
ELB improved by 0.045783
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.886
ELB improved by 0.0485415
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.835
ELB improved by 0.0515516
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.78
ELB improved by 0.0548269
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.722
ELB improved by 0.0583828
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.659
ELB improved by 0.0622371
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.593
ELB improved by 0.0664104
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.522
ELB improved by 0.0709271
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.446
ELB improved by 0.0758157
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.365
ELB improved by 0.0811091
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.278
ELB improved by 0.0868437
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.185
ELB improved by 0.0930584
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.085
ELB improved by 0.0997923
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.978
ELB improved by 0.10708
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.863
ELB improved by 0.114947
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.74
ELB improved by 0.123397
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.608
ELB improved by 0.132407
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.466
ELB improved by 0.141908
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.314
ELB improved by 0.151781
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.152
ELB improved by 0.16184
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.98
ELB improved by 0.171846
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.799
ELB improved by 0.181518
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.608
ELB improved by 0.190546
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.41
ELB improved by 0.198592
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.204
ELB improved by 0.205246
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.994
ELB improved by 0.209978
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.782
ELB improved by 0.21212
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.571
ELB improved by 0.210937
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.365
ELB improved by 0.205804
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.169
ELB improved by 0.196425
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.986
ELB improved by 0.183032
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.82
ELB improved by 0.166424
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.672
ELB improved by 0.147835
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.543
ELB improved by 0.128641
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.433
ELB improved by 0.110056
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.34
ELB improved by 0.092939
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.262
ELB improved by 0.0777546
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.198
ELB improved by 0.0646519
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.144
ELB improved by 0.0535685
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.1
ELB improved by 0.0443243
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.063
ELB improved by 0.0366885
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.033
ELB improved by 0.0304213
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.007
ELB improved by 0.0252969
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.986
ELB improved by 0.0211146
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.969
ELB improved by 0.0177023
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.954
ELB improved by 0.0149155
iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.941
ELB improved by 0.0126356
iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.93
ELB improved by 0.0107657
iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.921
ELB improved by 0.00922775
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.411 0.193 2.590
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.053 | 0.022 | 0.075 | |
| getPIPs | 0.051 | 0.011 | 0.063 | |
| graper | 0.083 | 0.016 | 0.099 | |
| makeExampleData | 0.010 | 0.001 | 0.010 | |
| makeExampleDataWithUnequalGroups | 0.011 | 0.002 | 0.013 | |
| plotELBO | 0.323 | 0.027 | 0.351 | |
| plotGroupPenalties | 1.085 | 0.045 | 1.131 | |
| plotPosterior | 0.658 | 0.027 | 0.685 | |
| predict.graper | 2.048 | 0.081 | 2.129 | |
| print.graper | 0.050 | 0.012 | 0.061 | |