* checking for file 'msbase/DESCRIPTION' ... OK
* preparing 'msbase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'msbase' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -ansi -g -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c llogic.c -o llogic.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -ansi -g -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c mscalibD.c -o mscalibD.o
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o msbase.so llogic.o mscalibD.o -L/Library/Frameworks/R.framework/Resources/lib/i386 -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/i386/libRblas.dylib
** arch - ppc
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -ansi -g -fPIC -g -O2 -std=gnu99 -c llogic.c -o llogic.o
gcc-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -ansi -g -fPIC -g -O2 -std=gnu99 -c mscalibD.c -o mscalibD.o
gcc-4.0 -arch ppc -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o msbase.so llogic.o mscalibD.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lR -dylib_file libRblas.dylib:/Library/Frameworks/R.framework/Resources/lib/ppc/libRblas.dylib
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: XML
Creating a new generic function for 'subset' in 'msbase'
Creating a new generic function for 'image' in 'msbase'
Creating a new generic function for 'summary' in 'msbase'
Creating a new generic function for 'plot' in 'msbase'
Creating a new generic function for 'points' in 'msbase'
[1] "test1"
Creating a new generic function for 'unlist' in 'msbase'
Creating a new generic function for 'hist' in 'msbase'
** help
>>> Building/Updating help pages for package 'msbase'
Formats: text html latex example
List text html latex example
Massvector-class text html latex example
Massvectorlist-class text html latex example
Mlist-class text html latex example
ROCDATA text html latex example
cals-methods text html latex example
calssim text html latex example
fbinary-methods text html latex example
fcor-methods text html latex example
fdist-methods text html latex example
finterS-methods text html latex example
fintersect-methods text html latex example
fis.element-methods text html latex example
fmatch-methods text html latex example
fmatchall-methods text html latex example
fsetdiff-methods text html latex example
fsetequal-methods text html latex example
funion-methods text html latex example
gamasses-methods text html latex example
listdist-methods text html latex
nrmatch-methods text html latex example
numeric-class text html latex example
pldata text html latex example
undocument-internal text html latex
** building package indices ...
* DONE (msbase)
* creating vignettes ... ERROR
Creating a new generic function for 'lapply' in '.GlobalEnv'
Error: chunk 9 (label=plotMV2)
Error in .local(obx, oby, ...) : SET_STRING_ELT() can only be applied to a 'character vector', not a 'list'
Error in buildVignettes(dir = ".") : Error: chunk 9 (label=plotMV2)
Error in .local(obx, oby, ...) : SET_STRING_ELT() can only be applied to a 'character vector', not a 'list'
Execution halted