* checking for file 'msbase/DESCRIPTION' ... OK
* preparing 'msbase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.9d/tmpdir/Rinst613215682
---------- Making package msbase ------------
adding build stamp to DESCRIPTION
making DLL ...
making llogic.d from llogic.c
making mscalibD.d from mscalibD.c
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -std=gnu99 -ansi -g -O2 -c llogic.c -o llogic.o
gcc -Id:/biocbld/1.9d/R/include -Wall -O2 -std=gnu99 -ansi -g -O2 -c mscalibD.c -o mscalibD.o
mscalibD.c: In function `getaccDIFUS':
mscalibD.c:521: warning: dereferencing type-punned pointer will break strict-aliasing rules
windres --include-dir d:/biocbld/1.9d/R/include -i msbase_res.rc -o msbase_res.o
gcc -shared -s -o msbase.dll msbase.def llogic.o mscalibD.o msbase_res.o -Ld:/biocbld/1.9d/R/bin -lR
Info: resolving _R_NaN by linking to __imp__R_NaN (auto-import)
Info: resolving _R_NaReal by linking to __imp__R_NaReal (auto-import)
Info: resolving _R_DimSymbol by linking to __imp__R_DimSymbol (auto-import)
Info: resolving _R_NilValue by linking to __imp__R_NilValue (auto-import)
Info: resolving _R_NamesSymbol by linking to __imp__R_NamesSymbol (auto-import)
Info: resolving _R_PosInf by linking to __imp__R_PosInf (auto-import)
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package msbase for lazy data loading
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'msbase'
Formats: text html latex example chm
List text html latex example chm
Massvector-class text html latex example chm
Massvectorlist-class text html latex example chm
Mlist-class text html latex example chm
ROCDATA text html latex example chm
cals-methods text html latex example chm
calssim text html latex example chm
fbinary-methods text html latex example chm
fcor-methods text html latex example chm
fdist-methods text html latex example chm
finterS-methods text html latex example chm
fintersect-methods text html latex example chm
fis.element-methods text html latex example chm
fmatch-methods text html latex example chm
fmatchall-methods text html latex example chm
fsetdiff-methods text html latex example chm
fsetequal-methods text html latex example chm
funion-methods text html latex example chm
gamasses-methods text html latex example chm
listdist-methods text html latex chm
nrmatch-methods text html latex example chm
numeric-class text html latex example chm
pldata text html latex example chm
undocument-internal text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.9d\Rpacks\msbase\chm\msbase.chm
Compile time: 0 minutes, 0 seconds
25 Topics
181 Local links
0 Internet links
1 Graphic
Created d:\biocbld\1.9d\Rpacks\msbase\chm\msbase.chm, 40,799 bytes
Compression decreased file by 81,340 bytes.
preparing package msbase for lazy loading
Loading required package: MASS
Loading required package: XML
Creating a new generic function for 'subset' in 'msbase'
Creating a new generic function for 'image' in 'msbase'
Creating a new generic function for 'summary' in 'msbase'
Creating a new generic function for 'plot' in 'msbase'
Creating a new generic function for 'points' in 'msbase'
Creating a new generic function for 'unlist' in 'msbase'
Creating a new generic function for 'hist' in 'msbase'
adding MD5 sums
* DONE (msbase)
* creating vignettes ... ERROR
Creating a new generic function for 'lapply' in '.GlobalEnv'
Loading required package: MASS
Loading required package: XML
Error: chunk 9 (label=plotMV2)
Error in .local(obx, oby, ...) : SET_STRING_ELT() can only be applied to a 'character vector', not a 'list'
Error in buildVignettes(dir = ".") : Error: chunk 9 (label=plotMV2)
Error in .local(obx, oby, ...) : SET_STRING_ELT() can only be applied to a 'character vector', not a 'list'
Execution halted