CHECK report for BioMVCClass on lemming

* checking for working latex ... OK * using log directory 'D:/biocbld/1.9d/Rpacks/BioMVCClass.Rcheck' * using R version 2.4.0 alpha (2006-09-10 r39242) * checking for file 'BioMVCClass/DESCRIPTION' ... OK * this is package 'BioMVCClass' version '1.0.6' * checking package dependencies ... WARNING package 'methods' is used but not declared See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking if this is a source package ... OK * checking whether package 'BioMVCClass' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... WARNING Loading required package: methods Error in inherits(x, "factor") : could not find function "installed.packages" Error: .onLoad failed in 'loadNamespace' for 'Ruuid' Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating BioMVCClass-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating BioMVCClass-manual.tex ... OK * checking BioMVCClass-manual.tex ... OK WARNING: There were 2 warnings, see D:/biocbld/1.9d/Rpacks/BioMVCClass.Rcheck/00check.log for details

installing R.css in D:/biocbld/1.9d/Rpacks/BioMVCClass.Rcheck ---------- Making package BioMVCClass ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing inst files installing man source files installing indices installing help >>> Building/Updating help pages for package 'BioMVCClass' Formats: text html latex example chm GSE-class text html latex example chm exprModel-class text html latex example chm graphModel-class text html latex example chm graphView-class text html latex example chm gseModel-class text html latex example chm heatmapView-class text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\1.9d\Rpacks\BioMVCClass.Rcheck\00_pkg_src\BioMVCClass\chm\BioMVCClass.chm Compile time: 0 minutes, 0 seconds 7 Topics 48 Local links 0 Internet links 1 Graphic Created d:\biocbld\1.9d\Rpacks\BioMVCClass.Rcheck\00_pkg_src\BioMVCClass\chm\BioMVCClass.chm, 21,438 bytes Compression decreased file by 12,226 bytes. adding MD5 sums * DONE (BioMVCClass)

Package 33/205	OS	Arch	BUILD	CHECK	BUILD BIN
BioMVCClass 1.0.6 Elizabeth Whalen	Linux (SUSE 9.2)	x86_64	OK	WARNINGS
	Linux (SUSE 9.2)	i686	OK	WARNINGS
	Solaris 2.9	sparc	OK	OK
	Linux (SUSE 10.0)	x86_64	OK	WARNINGS
	Windows Server 2003	x86_64	OK	[ WARNINGS ]	OK
	Windows XP	i686	OK	WARNINGS	skipped
	Mac OS X (10.4.6)	i686	OK	WARNINGS

BioMVCClass

1.0.6

Command output