Package: matchprobes

Version: 1.5.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check matchprobes_1.5.0.tar.gz

RetCode: 0

Time: 667.7 seconds

Status: WARNINGS

CheckDir: matchprobes.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/1.9d/Rpacks/matchprobes.Rcheck'
* using R version 2.4.0 alpha (2006-09-10 r39242)
* checking for file 'matchprobes/DESCRIPTION' ... OK
* this is package 'matchprobes' version '1.5.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  lib
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'matchprobes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating matchprobes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating matchprobes-manual.tex ... OK
* checking matchprobes-manual.tex ... OK

WARNING: There was 1 warning, see
  /extra/loc/biocbuild/1.9d/Rpacks/matchprobes.Rcheck/00check.log
for details

* Installing *source* package 'matchprobes' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c main.c -o main.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c strutils.c -o strutils.o
gcc -shared -L/usr/local/lib -o matchprobes.so main.o strutils.o   
** R
** data
** inst
** save image
Loading required package: Biobase

Loading required package: tools


Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy

Loading required package: affyio

** help
 >>> Building/Updating help pages for package 'matchprobes'
     Formats: text html latex example 
  basecontent                       text    html    latex   example
  combineAffyBatch                  text    html    latex   example
  complementSeq                     text    html    latex   example
  getProbeDataAffy                  text    html    latex   example
  getProbeData_1lq                  text    html    latex   example
  longestConsecutive                text    html    latex   example
  makeProbePackage                  text    html    latex   example
  matchprobes                       text    html    latex   example
  print.probetable                  text    html    latex   example
  reverseSeq                        text    html    latex   example
** building package indices ...
* DONE (matchprobes)