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Package 51/319HostnameOS / ArchBUILDCHECKBUILD BIN
BSgenome 1.12.5
H. Pages
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/BSgenome
Last Changed Rev: 42410 / Revision: 42512
Last Changed Date: 2009-10-15 10:46:38 -0700 (Thu, 15 Oct 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pitt Mac OS X Tiger (10.4.11) / i386 [ OK ] WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 
Package: BSgenome
Version: 1.12.5
Command: /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R CMD build BSgenome
StartedAt: 2009-10-20 15:36:42 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 15:38:28 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 105.5 seconds
RetCode: 0
Status: OK
PackageFile: BSgenome_1.12.5.tar.gz
PackageFileSize: 343.9 KiB

Command output

* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package ‘BSgenome’ ...
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 duplicated,
	 order,
	 pmax,
	 pmax.int,
	 pmin,
	 pmin.int,
	 rank,
	 rbind,
	 rep.int,
	 sapply,
	 sort,
	 table,
	 unique 

** help
*** installing help indices
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example 
  BSParams-class                    text    html    latex
  BSgenome-class                    text    html    latex   example
  BSgenomeForge                     text    html    latex   example
  GenomeData-class                  text    html    latex   example
  GenomeDataList-class              text    html    latex   example
  GenomeDescription-class           text    html    latex   example
  available.genomes                 text    html    latex   example
  bsapply                           text    html    latex   example
  gdapply                           text    html    latex
  getSeq                            text    html    latex   example
  injectSNPs                        text    html    latex   example
  strand                            text    html    latex   example
** building package indices ...
* DONE (BSgenome)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/BSgenomeDataPkg-template/inst/extdata' is empty
* building 'BSgenome_1.12.5.tar.gz'