BSgenome 1.12.5
H. Pages
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/BSgenome | | Last Changed Rev: 42410 / Revision: 42512 | | Last Changed Date: 2009-10-15 10:46:38 -0700 (Thu, 15 Oct 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | [ ERROR ] | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'BSgenome' ...
** R
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
** help
*** installing help indices
>>> Building/Updating help pages for package 'BSgenome'
Formats: text html latex example
BSParams-class text html latex
BSgenome-class text html latex example
BSgenomeForge text html latex example
GenomeData-class text html latex example
GenomeDataList-class text html latex example
GenomeDescription-class text html latex example
available.genomes text html latex example
bsapply text html latex example
gdapply text html latex
getSeq text html latex example
injectSNPs text html latex example
strand text html latex example
** building package indices ...
* DONE (BSgenome)
* creating vignettes ... ERROR
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:base :
cbind,
duplicated,
order,
pmax,
pmax.int,
pmin,
pmin.int,
rank,
rbind,
rep.int,
sapply,
sort,
table,
unique
Error: processing vignette 'GenomeSearching.Rnw' failed with diagnostics:
chunk 15 (label=c3)
Error in assign(".target", method@target, envir = envir) :
formal argument "envir" matched by multiple actual arguments
Execution halted