flowCore 1.10.0
F. Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowCore | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* Installing *source* package 'flowCore' ...
Using auto-selected zip options '--use-zip-data --use-zip-help'
** libs
making DLL ...
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c biexponential.c -o biexponential.o
biexponential.c: In function 'biexponential_transform':
biexponential.c:84: warning: unused variable 'res'
biexponential.c:82: warning: unused variable 'y'
biexponential.c:82: warning: unused variable 'x'
biexponential.c:69: warning: unused variable 'checkme'
biexponential.c: In function 'logicle_transform':
biexponential.c:125: warning: unused variable 'x'
biexponential.c:112: warning: unused variable 'checkme'
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inPolygon.c -o inPolygon.o
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inPolytope.c -o inPolytope.o
inPolytope.c: In function 'inPolytope':
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc -I"E:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c init.c -o init.o
init.c:18:2: warning: no newline at end of file
gcc -shared -s -o flowCore.dll tmp.def biexponential.o inPolygon.o inPolytope.o init.o -LE:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "array" of class "matrix" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "mts" of class "matrix" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "integer" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ordered" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
** help
*** installing help indices
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example chm
EHtrans-class text html latex example chm
GvHD text html latex chm
Subset-methods text html latex example chm
actionItem-class text html latex example chm
arcsinhTransform text html latex example chm
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biexponentialTransform text html latex example chm
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characterOrTransformation-class text html latex example chm
coerce text html latex example chm
compensateActionItem-class text html latex example chm
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filterSet-class text html latex example chm
filterSummary-class text html latex example chm
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flowFrame-class text html latex example chm
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norm2Filter-class text html latex example chm
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parameterFilter-class text html latex chm
parameterTransform-class text html latex chm
parameters-class text html latex chm
parameters-methods text html latex example chm
polygonGate text html latex example chm
polytopeGate text html latex chm
quadGate text html latex example chm
quadratic-class text html latex example chm
quadraticTransform text html latex example chm
randomFilterResult-class text html latex chm
ratio-class text html latex example chm
read.FCS text html latex example chm
read.FCSheader text html latex example chm
read.flowSet text html latex example chm
rectangleGate text html latex example chm
sampleFilter-class text html latex example chm
scaleTransform text html latex example chm
setOperationFilter-class text html latex chm
singleParameterTransform-class text html latex example chm
sinht-class text html latex example chm
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split-methods text html latex example chm
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timeFilter-class text html latex example chm
transform-class text html latex example chm
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truncateTransform text html latex example chm
unitytransform-class text html latex example chm
view-class text html latex example chm
workFlow-class text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpHlYFKY\R.INSTALL678418be\flowCore\chm\flowCore.chm
Compile time: 0 minutes, 1 second
101 Topics
1,596 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\tmpdir\RtmpHlYFKY\R.INSTALL678418be\flowCore\chm\flowCore.chm, 186,711 bytes
Compression decreased file by 516,044 bytes.
** building package indices ...
** MD5 sums
packaged installation of 'flowCore' as flowCore_1.10.0.zip
* DONE (flowCore)