flowCore 1.10.0
F. Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowCore | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ OK ] | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'flowCore' ...
** libs
making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c biexponential.c -o biexponential.o
biexponential.c: In function 'biexponential_transform':
biexponential.c:84: warning: unused variable 'res'
biexponential.c:82: warning: unused variable 'y'
biexponential.c:82: warning: unused variable 'x'
biexponential.c:69: warning: unused variable 'checkme'
biexponential.c: In function 'logicle_transform':
biexponential.c:125: warning: unused variable 'x'
biexponential.c:112: warning: unused variable 'checkme'
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inPolygon.c -o inPolygon.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c inPolytope.c -o inPolytope.o
inPolytope.c: In function 'inPolytope':
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include" -O3 -Wall -std=gnu99 -c init.c -o init.o
init.c:18:2: warning: no newline at end of file
gcc -shared -s -o flowCore.dll tmp.def biexponential.o inPolygon.o inPolytope.o init.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
... done
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "array" of class "matrix" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "mts" of class "matrix" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "integer" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ordered" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
** help
*** installing help indices
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example chm
EHtrans-class text html latex example chm
GvHD text html latex chm
Subset-methods text html latex example chm
actionItem-class text html latex example chm
arcsinhTransform text html latex example chm
asinht-class text html latex example chm
biexponentialTransform text html latex example chm
boundaryFilter-class text html latex example chm
characterOrTransformation-class text html latex example chm
coerce text html latex example chm
compensateActionItem-class text html latex example chm
compensateView-class text html latex example chm
compensatedParameter-class text html latex example chm
compensation-class text html latex example chm
concreteFilter-class text html latex chm
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dg1polynomial-class text html latex example chm
each_col-methods text html latex example chm
ellipsoidGate text html latex example chm
exponential-class text html latex example chm
expressionFilter-class text html latex example chm
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filterResult-class text html latex example chm
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filterSet-class text html latex example chm
filterSummary-class text html latex example chm
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flowFrame-class text html latex example chm
flowSet-class text html latex example chm
fsApply text html latex example chm
gateActionItem-class text html latex example chm
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hyperlog-class text html latex example chm
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logarithm-class text html latex example chm
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logicleTransform text html latex example chm
manyFilterResult-class text html latex example chm
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norm2Filter-class text html latex example chm
normalization-class text html latex chm
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normalizeView-class text html latex example chm
parameterFilter-class text html latex chm
parameterTransform-class text html latex chm
parameters-class text html latex chm
parameters-methods text html latex example chm
polygonGate text html latex example chm
polytopeGate text html latex chm
quadGate text html latex example chm
quadratic-class text html latex example chm
quadraticTransform text html latex example chm
randomFilterResult-class text html latex chm
ratio-class text html latex example chm
read.FCS text html latex example chm
read.FCSheader text html latex example chm
read.flowSet text html latex example chm
rectangleGate text html latex example chm
sampleFilter-class text html latex example chm
scaleTransform text html latex example chm
setOperationFilter-class text html latex chm
singleParameterTransform-class text html latex example chm
sinht-class text html latex example chm
spillover-flowSet text html latex chm
split-methods text html latex example chm
splitScaleTransform text html latex example chm
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squareroot-class text html latex example chm
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subsettingView-class text html latex example chm
summarizeFilter-methods text html latex chm
timeFilter-class text html latex example chm
transform-class text html latex example chm
transformActionItem-class text html latex example chm
transformFilter-class text html latex example chm
transformList-class text html latex example chm
transformMap-class text html latex example chm
transformReference-class text html latex chm
transformView-class text html latex example chm
transformation-class text html latex chm
truncateTransform text html latex example chm
unitytransform-class text html latex example chm
view-class text html latex example chm
workFlow-class text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.4-bioc\meat\flowCore\chm\flowCore.chm
Compile time: 0 minutes, 2 seconds
101 Topics
1,596 Local links
2 Internet links
1 Graphic
Created e:\biocbld\bbs-2.4-bioc\meat\flowCore\chm\flowCore.chm, 186,711 bytes
Compression decreased file by 516,044 bytes.
** building package indices ...
** MD5 sums
* DONE (flowCore)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'flowCore_1.10.0.tar.gz'