flowCore 1.10.0
F. Hahne
| Bioconductor Changelog | | Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/flowCore | | Last Changed Rev: 39013 / Revision: 42512 | | Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ OK ] | OK | OK |
* checking for file 'flowCore/DESCRIPTION' ... OK
* preparing 'flowCore':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package ‘flowCore’ ...
** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
biexponential.c: In function ‘biexponential_transform’:
biexponential.c:84: warning: unused variable ‘res’
biexponential.c:82: warning: unused variable ‘y’
biexponential.c:82: warning: unused variable ‘x’
biexponential.c:69: warning: unused variable ‘checkme’
biexponential.c: In function ‘logicle_transform’:
biexponential.c:125: warning: unused variable ‘x’
biexponential.c:112: warning: unused variable ‘checkme’
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function ‘inPolytope’:
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
biexponential.c: In function ‘biexponential_transform’:
biexponential.c:84: warning: unused variable ‘res’
biexponential.c:82: warning: unused variable ‘y’
biexponential.c:82: warning: unused variable ‘x’
biexponential.c:69: warning: unused variable ‘checkme’
biexponential.c: In function ‘logicle_transform’:
biexponential.c:125: warning: unused variable ‘x’
biexponential.c:112: warning: unused variable ‘checkme’
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function ‘inPolytope’:
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc64
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
biexponential.c: In function ‘biexponential_transform’:
biexponential.c:84: warning: unused variable ‘res’
biexponential.c:82: warning: unused variable ‘y’
biexponential.c:82: warning: unused variable ‘x’
biexponential.c:69: warning: unused variable ‘checkme’
biexponential.c: In function ‘logicle_transform’:
biexponential.c:125: warning: unused variable ‘x’
biexponential.c:112: warning: unused variable ‘checkme’
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function ‘inPolytope’:
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch ppc64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc64 -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o
gcc-4.2 -arch ppc64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c biexponential.c -o biexponential.o
biexponential.c: In function ‘biexponential_transform’:
biexponential.c:84: warning: unused variable ‘res’
biexponential.c:82: warning: unused variable ‘y’
biexponential.c:82: warning: unused variable ‘x’
biexponential.c:69: warning: unused variable ‘checkme’
biexponential.c: In function ‘logicle_transform’:
biexponential.c:125: warning: unused variable ‘x’
biexponential.c:112: warning: unused variable ‘checkme’
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolygon.c -o inPolygon.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c inPolytope.c -o inPolytope.o
inPolytope.c: In function ‘inPolytope’:
inPolytope.c:95: warning: suggest parentheses around comparison in operand of |
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -c init.c -o init.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowCore.so biexponential.o inPolygon.o inPolytope.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
pcaPP 0.1-1 loaded
Scalable Robust Estimators with High Breakdown Point (version 1.0-00)
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "array" of class "matrix" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "mts" of class "matrix" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "signature" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ObjectsWithPackage" of class "character" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "integer" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
Warning in .checkSubclasses(class1, classDef, class2, classDef2, where1, :
Subclass "ordered" of class "numeric" is not local and cannot be updated for new inheritance information; consider setClassUnion()
** help
*** installing help indices
>>> Building/Updating help pages for package 'flowCore'
Formats: text html latex example
EHtrans-class text html latex example
GvHD text html latex
Subset-methods text html latex example
actionItem-class text html latex example
arcsinhTransform text html latex example
asinht-class text html latex example
biexponentialTransform text html latex example
boundaryFilter-class text html latex example
characterOrTransformation-class text html latex example
coerce text html latex example
compensateActionItem-class text html latex example
compensateView-class text html latex example
compensatedParameter-class text html latex example
compensation-class text html latex example
concreteFilter-class text html latex
curv1Filter-class text html latex example
curv2Filter-class text html latex example
dg1polynomial-class text html latex example
each_col-methods text html latex example
ellipsoidGate text html latex example
exponential-class text html latex example
expressionFilter-class text html latex example
fcReference-class text html latex example
filter-and-methods text html latex
filter-class text html latex
filter-in-methods text html latex
filter-methods text html latex example
filter-on-methods text html latex example
filterDetails-methods text html latex
filterList-class text html latex example
filterReference-class text html latex
filterResult-class text html latex example
filterResultList-class text html latex example
filterSet-class text html latex example
filterSummary-class text html latex example
filterSummaryList-class text html latex example
flowFrame-class text html latex example
flowSet-class text html latex example
fsApply text html latex example
gateActionItem-class text html latex example
gateView-class text html latex example
hyperlog-class text html latex example
identifier-methods text html latex example
invsplitscale-class text html latex example
keyword-methods text html latex example
kmeansFilter text html latex example
linearTransform text html latex example
lnTransform text html latex example
logTransform text html latex example
logarithm-class text html latex example
logicalFilterResult-class text html latex example
logicleTransform text html latex example
manyFilterResult-class text html latex example
multipleFilterResult-class text html latex example
norm2Filter-class text html latex example
normalization-class text html latex
normalizeActionItem-class text html latex example
normalizeView-class text html latex example
parameterFilter-class text html latex
parameterTransform-class text html latex
parameters-class text html latex
parameters-methods text html latex example
polygonGate text html latex example
polytopeGate text html latex
quadGate text html latex example
quadratic-class text html latex example
quadraticTransform text html latex example
randomFilterResult-class text html latex
ratio-class text html latex example
read.FCS text html latex example
read.FCSheader text html latex example
read.flowSet text html latex example
rectangleGate text html latex example
sampleFilter-class text html latex example
scaleTransform text html latex example
setOperationFilter-class text html latex
singleParameterTransform-class text html latex example
sinht-class text html latex example
spillover-flowSet text html latex
split-methods text html latex example
splitScaleTransform text html latex example
splitscale-class text html latex example
squareroot-class text html latex example
subsetting-class text html latex
subsettingActionItem-class text html latex example
subsettingView-class text html latex example
summarizeFilter-methods text html latex
timeFilter-class text html latex example
transform-class text html latex example
transformActionItem-class text html latex example
transformFilter-class text html latex example
transformList-class text html latex example
transformMap-class text html latex example
transformReference-class text html latex
transformView-class text html latex example
transformation-class text html latex
truncateTransform text html latex example
unitytransform-class text html latex example
view-class text html latex example
workFlow-class text html latex example
** building package indices ...
* DONE (flowCore)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'flowCore_1.10.0.tar.gz'