Back to First build/check report with an "external build node"

This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
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BUILD results for BSgenome on xps15


To the developers/maintainers of the BSgenome package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 23/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.69.0  (landing page)
Hervé Pagès
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/BSgenome
git_branch: devel
git_last_commit: 7ebccb6
git_last_commit_date: 2023-04-25 09:43:43 -0400 (Tue, 25 Apr 2023)
xps15Linux (Ubuntu 23.04) / x86_64  OK    OK    WARNINGS  

Summary

Package: BSgenome
Version: 1.69.0
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2023-06-01 12:38:31 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:40:43 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 132.1 seconds
RetCode: 0
Status:   OK  
PackageFile: BSgenome_1.69.0.tar.gz
PackageFileSize: 6.013 MiB

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory ‘BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata’ is empty
* building ‘BSgenome_1.69.0.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘BSgenome/inst/extdata/GentlemanLab/BSgenome.Gmellonella.NCBI.ASM364042v2-tools/fasta_to_sorted_2bit.R’