| Back to First build/check report with an "external build node" |
This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| xps15 | Linux (Ubuntu 23.04) | x86_64 | 4.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" | 544 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DESeq2 package: Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 29/91 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| DESeq2 1.41.1 (landing page) Michael Love
| xps15 | Linux (Ubuntu 23.04) / x86_64 | OK | ERROR | skipped | ||||||||
| Package: DESeq2 |
| Version: 1.41.1 |
| Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL DESeq2 |
| StartedAt: 2023-06-01 12:23:59 -0700 (Thu, 01 Jun 2023) |
| EndedAt: 2023-06-01 12:25:05 -0700 (Thu, 01 Jun 2023) |
| EllapsedTime: 66.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc/R/bin/R CMD INSTALL DESeq2 ### ############################################################################## ############################################################################## * installing to library ‘/home/hpages/bbs-3.18-bioc-testing/Rlibs’ * installing *source* package ‘DESeq2’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 12.2.0-17ubuntu1) 12.2.0’ g++ -std=gnu++17 -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c DESeq2.cpp -o DESeq2.o g++ -std=gnu++17 -I"/home/hpages/bbs-3.18-bioc/R/include" -DNDEBUG -I'/home/hpages/bbs-3.18-bioc/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -shared -L/usr/local/lib -o DESeq2.so DESeq2.o RcppExports.o -llapack -L/home/hpages/bbs-3.18-bioc/R/lib -lRblas -lgfortran -lm -lquadmath installing to /home/hpages/bbs-3.18-bioc-testing/Rlibs/00LOCK-DESeq2/00new/DESeq2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DESeq2)