| Back to First build/check report with an "external build node" |
This page was generated on 2023-06-01 18:17:19 -0400 (Thu, 01 Jun 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| xps15 | Linux (Ubuntu 23.04) | x86_64 | 4.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" | 544 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the edgeR package: Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 32/91 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| edgeR 3.43.3 (landing page) Yunshun Chen
| xps15 | Linux (Ubuntu 23.04) / x86_64 | OK | OK | ERROR | ||||||||
| Package: edgeR |
| Version: 3.43.3 |
| Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD check --install=check:edgeR.install-out.txt --library=/home/hpages/bbs-3.18-bioc-testing/Rlibs --timings edgeR_3.43.3.tar.gz |
| StartedAt: 2023-06-01 13:02:44 -0700 (Thu, 01 Jun 2023) |
| EndedAt: 2023-06-01 13:02:49 -0700 (Thu, 01 Jun 2023) |
| EllapsedTime: 5.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: edgeR.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/hpages/bbs-3.18-bioc/R/bin/R CMD check --install=check:edgeR.install-out.txt --library=/home/hpages/bbs-3.18-bioc-testing/Rlibs --timings edgeR_3.43.3.tar.gz
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* using log directory ‘/home/hpages/bbs-3.18-bioc-testing/meat/edgeR.Rcheck’
* using R version 4.3.0 Patched (2023-05-23 r84466)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 12.2.0-17ubuntu1) 12.2.0
GNU Fortran (Ubuntu 12.2.0-17ubuntu1) 12.2.0
* running under: Ubuntu 23.04
* using session charset: UTF-8
* checking for file ‘edgeR/DESCRIPTION’ ... OK
* this is package ‘edgeR’ version ‘3.43.3’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘rhdf5’
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
See
‘/home/hpages/bbs-3.18-bioc-testing/meat/edgeR.Rcheck/00check.log’
for details.