Mustafa Erhan Ozer
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:03 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2024-11-20 10:30:02 -0500 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 10:34:38 -0500 (Wed, 20 Nov 2024) |
| EllapsedTime: 275.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGUI 0.502 0.041 5.93
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6716,406906,538,6439,3242,3351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5372,2806,445,6199,8473,9420
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407011,9927,1029,2538,7347,3673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,84274,9512,7390,11096,8050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6696,7274,23274,5054,653,1629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,570,3172,55532,29881,3988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23291,153,6548,50484,51,8648
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27125,1544,7388,3988,2628,3250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10991,7916,3485,5442,6347,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9698,26291,5346,8050,55270,3440
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 942,2260,2950,7386,8462,54931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2683,79644,6517,6788,7919,185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2702,3357,3483,7274,22820,170302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79001,79731,7381,6391,6374,652
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,151,10642,5105,3174,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5265,100506742,3663,3416,7252,26060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23175,221458,590,2713,26354,1348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3351,55331,5160,1348,1401,1369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,216,23291,51458,2696,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,1757,1347,27235,2904,79736
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2034,91869,7274,55532,51649,7287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3938,6696,7292,5126,9451,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,55034,406938,5372,3598,3480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 479,3417,6999,506,23410,51548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 563,9672,6901,7048,5321,5139
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10580,19,384,284958,5507,55768
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26354,54331,2203,8560,1909,25915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4312,4688,54658,1769,627,629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,9409,1716,92935,3145,1906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3490,54210,51167,51099,7407,22796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2950,64241,9388,60386,55699,2030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1444,6387,1116,100,55270,64788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169792,7100,3759,6403,7054,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5345,1802,2170,640,149461,6938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6566,91647,2581,5588,5713,4702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131118,57761,729230,8517,1621,54968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 656,4282,1409,1348,2328,8651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5406,6445,4886,101180976,3791,5239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55005,1312,4899,388962,80201,7345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1369,5625,6566,6389,384,29928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2632,85365,29929,2778,2170,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4694,4318,1524,8648,79001,3115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23175,9607,229,2717,516,7076
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 358,27235,5621,6648,128486,5274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2203,54982,5069,6522,3784,1376
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 308,4544,2639,4247,57511,10352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,4694,4915,5581,64919,208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7388,729238,10379,4688,114814,55343
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1353,6513,5364,285362,131118,6934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 128486,3992,1557,4668,285848,3170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8932,293,6556,374291,55858,90480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4889,56997,55818,26517,2776,2746
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,57107,7035,2690,3990,8462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1186,585,4656,152078,1339,6934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 275,728294,51103,2740,3920,1646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64900,2990,51441,111,133522,6718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6401,208,4125,3570,2548,1537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,644974,9997,65985,513,2896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,5618,8945,84701,4982,57505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,131118,1019,84947,6351,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6535,55630,477,79087,2767,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,4758,5730,197,10580,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2099,285362,1812,9672,231,8678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 617,5256,824,23409,1956,3358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3113,11136,1586,1234,6445,55937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84902,3170,10911,85365,1650,7054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2581,1649,6319,8675,1544,10166
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104909134,2638,50674,3489,2888,111
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22901,6354,958,10229,5162,407045
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8714,51092,407010,3557,5052,9526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5250,10226,231,2582,25821,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5176,5364,285848,5184,1595,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2203,27010,1601,1203,1675,8560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283459,2946,1514,3440,22901,6648
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3486,51085,8799,1491,57678,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2952,5621,632,5255,51,160287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1234,5515,5919,153,51024,5618
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4780,4313,1282,7084,285,28234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406937,3290,3081,4688,6382,3948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255738,84062,3357,121268,3643,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4351,84061,4942,539,1678,84557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,5743,7026,445,2745,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 463,3159,26354,1543,23163,51021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,10019,56606,80222,1806,8431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5167,5330,10724,6347,9927,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,4723,4118,844,51085,85479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3351,6934,55065,406913,2542,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132,1889,84833,574447,391051,2056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6354,824,6403,3600,4887,10667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3552,374291,7100,3251,3554,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 292,4842,5770,5836,7220,23038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,3356,551,4089,9429,4723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3773,4282,22796,79602,1646,84833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 629,54600,5214,2767,26191,1649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2118,1718,9663,6340,1075,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1027,3082,54344,8309,3382,8651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10724,4718,847,7841,653509,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8642,3145,100529063,1585,3157,2200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132,10379,6584,3074,54805,1786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 958,5367,79144,2034,148979,253943
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 587,1537,1352,10841,7037,181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64801,3931,132158,6647,4852,2639
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7386,54567,7345,57128,3586,4023
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,7172,26060,5618,4126,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10195,2890,7035,29926,90480,5618
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8202,28234,3174,6788,10875,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2314,4779,388753,1230,123099,6513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2788,410,80267,23400,55967,4697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9076,1584,5860,406934,83439,26003
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84649,200539,51,80224,91574,54896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8639,1588,4338,8877,1027,2582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9415,401,28958,2395,22845,7078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7431,10999,4790,26175,537,3060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 617,79587,406937,5551,2194,55858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7421,6009,2053,4313,2146,5331
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
90.335 0.707 91.173
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.502 | 0.041 | 5.930 | |