Mustafa Erhan Ozer
| Snapshot Date: 2025-02-03 13:00 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-06 12:07 -0500 (Thu, 06 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4753 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4501 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4524 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4476 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | NA | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-02-04 06:53:53 -0500 (Tue, 04 Feb 2025) |
| EndedAt: 2025-02-04 06:59:40 -0500 (Tue, 04 Feb 2025) |
| EllapsedTime: 347.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 367,9388,4351,11232,51103,1649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3373,574447,728,509,285,2653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,6772,351,728294,2244,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85476,7167,593,7412,3172,5730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,4705,1435,8813,91949,847
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,1234,10423,9414,308,3978
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10577,285362,53905,138050,51176,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3569,191,5193,6602,85479,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,2713,596,79796,5313,4318
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 842,130589,5713,7132,2571,22845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133396,4719,54704,9498,19,55343
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3081,3486,2785,5601,2673,55863
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 101180976,825,150379,1234,56623,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,1606,7077,5264,28234,3899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,407010,4299,3060,1559,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6356,3123,406947,116931,1802,3773
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29960,2247,90480,122961,57818,351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84701,4311,4299,4942,51083,1588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,2243,26517,197131,5257,26227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3931,2678,1436,4153,79158,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 216,137682,3692,124976,10891,80070
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29947,3558,201305,2109,81570,1588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 509,3551,85569,3569,64131,10269
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2739,493,56259,2244,51176,361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3554,2632,2694,111,51555,84902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6492,1605,23516,90480,4942,84947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2266,361,166785,54567,6928,3667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3767,50506,55163,57678,685,5727
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51103,1208,1355,8854,5860,842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2118,3373,6554,29947,4502,116150
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53346,2108,5581,7372,406913,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10094,3030,2597,3304,26119,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6262,55331,5293,5327,2786,1910
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,5579,10845,8879,25839,2584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83884,55065,50506,2784,1815,5189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4285,51176,374291,1581,3417,200186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,1716,401,151,80347,116931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114814,6789,1490,60386,28951,4879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23409,84239,3117,1072,23543,57818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23291,80331,5139,1757,6714,6678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57001,23129,9414,55024,9370,5499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2695,350,5345,56938,518,6934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6262,8932,1346,4967,7220,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,54802,4879,10560,1675,114814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57380,79944,6888,207,5837,23516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51116,2517,5367,10753,1029,2475
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,84334,4126,4705,4915,3101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1621,231,2752,2328,52,120227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203,344,91647,7284,5506,54658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10599,6531,5243,79944,1601,4779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,5950,3066,80207,23654,9560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2739,84447,3667,8471,148738,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23600,6556,5345,54576,846,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,2310,3250,5467,5250,3779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,2335,6934,632,6262,941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3658,23530,4126,5723,29929,825
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,6775,10094,9971,585,819
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8473,3115,407011,2947,100130015,5139
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6198,516,2632,5293,292,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8243,10159,5096,1200,411,4314
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10845,140803,7407,3948,6938,929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,5080,7076,10577,5241,344905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1859,200810,11254,325,9091,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 593,79644,4887,23654,345,5250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 292,7386,3458,56999,1813,2328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3779,2592,2064,255231,376497,6009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3624,5139,3440,2806,3091,3684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,2717,57511,10875,9968,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9560,64805,28958,427,5595,509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3813,1351,65993,9779,2247,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1281,3565,4524,4899,5091,6514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197,2588,4722,3113,8818,11213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3458,23291,11255,686,3098,2158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5950,150,55699,60386,26003,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56919,339,24147,207,1373,4942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7351,177,1443,1956,1588,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2689,5330,388743,6248,7390,840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3357,51293,7100,7292,6770,2101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5313,3507,2006,6448,1543,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84706,5250,6571,3627,55331,3062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,6199,63899,2194,55486,7289
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26003,8309,64131,344,4976,6891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3416,6786,407010,155,4153,2582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,4700,6341,10013,122961,56848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8813,55630,3988,886,1376,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100131801,406947,1559,1340,9630,54931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2642,9021,3339,407021,4314,51660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10229,54549,2571,5621,3375,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4854,10165,56606,1728,10269,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,594,51316,5972,5507,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 93587,3098,25839,160287,83884,6354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3357,350,9414,29947,56999,219
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,5595,4724,55331,7320,52
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,1738,1728,355,3032,6932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,133,5122,5191,9507,147007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54539,3596,9382,5950,79053,1268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6565,4724,3115,5293,52,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 155,2696,3708,3953,205327,2334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 654,6198,326625,80331,3373,3113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,84062,3992,7409,407021,3295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7916,3783,8517,55967,8243,5465
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7030,539,30061,51601,3141,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1080,83693,4780,65993,131118,2588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728,2314,51103,92667,2876,2792
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2787,2937,3708,2944,6401,113235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4285,3949,1401,4594,867,1893
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7056,1277,574447,65080,1029,211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4887,85446,4524,2244,3460,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6908,84300,1499,3358,92935,3155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6448,3651,4247,5824,8802,5175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1583,2487,4656,2693,79587,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2847,79144,3309,63874,5730,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55699,92667,3779,166785,153,9512
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55753,7409,8309,5579,2778,5805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4694,5442,2639,55283,55340,51608
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
75.54 2.18 77.84
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.62 | 0.09 | 1.33 | |