Mustafa Erhan Ozer
| Snapshot Date: 2025-02-03 13:00 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-06 12:05 -0500 (Thu, 06 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4753 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4501 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4524 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4476 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | NA | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-02-04 03:02:50 -0500 (Tue, 04 Feb 2025) |
| EndedAt: 2025-02-04 03:07:38 -0500 (Tue, 04 Feb 2025) |
| EllapsedTime: 287.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 2572,1282,54896,1557,79133,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3098,2739,5599,56729,4718,1798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2591,6009,5826,338,8945,54931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406938,5950,5428,1591,326625,411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,5373,1621,83693,488,5068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1363,51004,51167,26003,5250,7424
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,147007,4023,8743,1588,5713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4256,3651,8678,2746,2559,2678
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83439,3562,5313,22845,1499,55818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2820,57176,3158,407008,339,124454
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6199,79053,3489,9630,51094,8560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7381,1234,9759,3570,5291,4669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6616,1629,4790,4312,11232,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 213,2947,10560,54675,25813,407007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2155,1508,596,80347,4358,5228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,5702,3784,64919,9180,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10229,9698,790,3562,54331,8879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,574447,406913,3992,7099,285848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5901,3643,3586,1812,1737,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55644,23530,9997,3157,10,2639
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,728294,125988,5799,116931,356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2572,2030,335,406913,2799,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5837,2597,155,29960,5601,161247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25915,131669,5255,2159,5211,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,2314,2760,5825,2538,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 118,27089,3710,4860,11035,3308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285848,6720,3700,1393,22796,617
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23590,2200,1649,10094,3938,80270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2159,57511,387787,79001,104,6556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6833,2572,91869,4967,5825,3486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90480,836,80070,2647,5069,665
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55163,2642,3684,5515,84557,56259
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,10250,1717,51004,2334,1555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8202,3312,2108,1346,22901,10559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 570,54576,539,5798,1371,162417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56052,2990,10891,3383,9414,857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1493,80267,4729,54148,5644,2702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200810,104,26191,3373,5167,885
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6928,9332,10911,129787,54575,10891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3383,9560,9692,51144,6347,56922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53335,56923,6696,51004,1022,2632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10874,6392,9575,2155,7252,1028
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150,518,213,169026,10229,9076
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,4314,6338,6770,387787,2784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,84062,6319,617,51181,79731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10094,2146,6390,54210,55970,79572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1208,3554,4286,85476,9779,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197131,3507,55034,27232,4012,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29880,1394,5617,886,10935,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25821,2647,253559,344,5445,64087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,3553,6718,2790,5095,4247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6602,2693,3557,1356,92935,551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,8202,587,7345,685,7388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 801,2760,178,5770,4704,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6536,81033,129787,185,3931,4697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3779,177,1327,9526,440503,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79602,54982,5162,2588,10383,2805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26227,34,54704,123,7292,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3565,4712,5551,23291,5207,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6833,64131,2591,55750,4015,1737
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4887,151,125988,29926,3122,4548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2108,2247,29947,384,10643,7494
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,6183,51458,2702,57017,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2542,490,842,8879,407009,1634
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255738,2820,200205,4967,361,3953
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3875,3329,2710,10682,119559,8772
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 216,27344,137994,1371,3339,6718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,7841,10243,3087,26235,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5078,5250,2731,3418,169026,590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 708,6374,55858,1813,1769,5730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5194,55967,3074,572,51441,4524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1634,140803,3291,7054,51422,54798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5506,8802,5631,231,2717,249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,3930,54805,53345,23654,2875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 151306,10102,942,824,1346,1757
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3054,941,539,23163,8862,51604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83985,10537,650,5230,728,2776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5078,2673,4306,3162,7355,33
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4887,3576,3938,344905,5053,3557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26503,1409,80224,5122,116931,9868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3954,123283,1435,819,111,6566
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6696,2793,7347,3875,10991,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,885,9409,2495,6891,509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8473,7030,4524,155,640,868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,339,1593,4968,155,26521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6566,4128,6794,54968,8202,5161
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 490,54902,51241,5584,22796,4915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5745,8803,3375,5442,793,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79934,6648,8600,7431,26191,6696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,56922,5713,6514,2052,5473
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79087,2804,217,5971,8648,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1906,55768,1056,2788,55788,1361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 308,7384,51206,4143,5306,3990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 824,55532,1737,8841,2517,2305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,91942,2950,145264,3460,4704
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406991,200186,407009,5730,56997,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1558,654,35,160428,1027,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2937,1718,57001,2784,4256,4729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5095,886,114548,9091,1351,54106
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10580,85479,1629,170302,652,10062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100128525,11093,55858,7098,10195,3351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 491,1029,486,8639,6476,84987
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4713,7390,10019,27235,3375,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,8600,2109,35,51555,1606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57511,10000,2109,30061,8462,5345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84987,7840,5241,1277,121268,81034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 356,384,4729,3073,8694,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9572,3562,2571,4247,795,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2944,3948,3784,6535,3479,8802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4040,886,3480,55750,79633,2335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84889,6009,4899,2194,3425,124976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,8813,2776,1607,2309,347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51300,5071,2475,1582,407024,29843
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84447,54552,7528,23129,407008,51083
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,406913,130589,55486,347411,847
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
64.342 1.126 65.575
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.630 | 0.053 | 3.571 | |