Package: CellScore

Version: 1.2.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings CellScore_1.2.0.tar.gz

StartedAt: 2019-04-15 22:44:55 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 22:49:44 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 288.4 seconds

RetCode: 0

Status:  OK

CheckDir: CellScore.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:CellScore.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings CellScore_1.2.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/CellScore.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
CellScoreReport                32.832  0.696  33.587
heatmapOnOffMarkers            31.796  0.320  32.334
extractTransitions             28.936  0.308  29.278
ScatterplotCellScoreComponents 26.472  0.252  26.743
RugplotCellScore               25.764  0.224  26.029
PlotCosineSimHeatmap           21.180  0.164  21.365
BoxplotCellScore               17.660  0.324  18.016
CellScore                      17.608  0.324  17.979
PcaStandards                   16.556  0.236  16.808
CosineSimScore                 15.164  0.340  15.538
BarplotOnOff                   11.032  0.864  12.520
OnOff                          10.264  0.232  10.508
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL CellScore
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘CellScore’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CellScore)

name	user	system	elapsed
BarplotOnOff	11.032	0.864	12.520
BoxplotCellScore	17.660	0.324	18.016
CellScore	17.608	0.324	17.979
CellScoreReport	32.832	0.696	33.587
CosineSimScore	15.164	0.340	15.538
OnOff	10.264	0.232	10.508
PcaStandards	16.556	0.236	16.808
PlotCosineSimHeatmap	21.180	0.164	21.365
RugplotCellScore	25.764	0.224	26.029
ScatterplotCellScoreComponents	26.472	0.252	26.743
extractTransitions	28.936	0.308	29.278
heatmapOnOffMarkers	31.796	0.320	32.334
rugplotDonorTargetTest	0	0	0
scatterplotDonorTargetTest	0	0	0