Package: CellScore

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CellScore_1.2.0.tar.gz

StartedAt: 2019-04-15 22:51:22 -0400 (Mon, 15 Apr 2019)

EndedAt: 2019-04-15 22:57:44 -0400 (Mon, 15 Apr 2019)

EllapsedTime: 382.3 seconds

RetCode: 0

Status:  OK

CheckDir: CellScore.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CellScore.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CellScore_1.2.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/CellScore.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CellScore/DESCRIPTION’ ... OK
* this is package ‘CellScore’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CellScore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
CellScoreReport                45.299  3.693  49.464
heatmapOnOffMarkers            38.042  3.160  41.682
RugplotCellScore               35.635  2.685  38.870
ScatterplotCellScoreComponents 35.205  2.686  38.564
extractTransitions             35.165  2.695  38.429
PlotCosineSimHeatmap           27.924  1.773  30.022
PcaStandards                   20.021  1.268  21.448
BoxplotCellScore               19.392  1.609  21.169
CosineSimScore                 19.303  1.310  20.825
CellScore                      16.526  1.459  18.054
BarplotOnOff                   13.341  2.162  15.673
OnOff                          10.903  1.733  12.759
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CellScore
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘CellScore’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CellScore)

name	user	system	elapsed
BarplotOnOff	13.341	2.162	15.673
BoxplotCellScore	19.392	1.609	21.169
CellScore	16.526	1.459	18.054
CellScoreReport	45.299	3.693	49.464
CosineSimScore	19.303	1.310	20.825
OnOff	10.903	1.733	12.759
PcaStandards	20.021	1.268	21.448
PlotCosineSimHeatmap	27.924	1.773	30.022
RugplotCellScore	35.635	2.685	38.870
ScatterplotCellScoreComponents	35.205	2.686	38.564
extractTransitions	35.165	2.695	38.429
heatmapOnOffMarkers	38.042	3.160	41.682
rugplotDonorTargetTest	0.001	0.001	0.001
scatterplotDonorTargetTest	0.000	0.001	0.001