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###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:BulkSignalR.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings BulkSignalR_0.99.22.tar.gz
###
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/BulkSignalR.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'BulkSignalR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BulkSignalR' version '0.99.22'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BulkSignalR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'BulkSignalR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cacheClear
> ### Title: Delete cache content.
> ### Aliases: cacheClear
> 
> ### ** Examples
> 
> cacheClear(dir="database")
→ BulkSignalR cache "database" has been deleted.
- Location: C:\Users\biocbuild\AppData\Local/R/cache/R/BulkSignalR/database
- No. of files: 0

> # need to recreate database in order to run examples well
> createDatabase(verbose=TRUE)
Warning: download failed
  web resource path: 'https://partage-dev.montp.inserm.fr:9192/CBSB/SignalR/database/SignalR.db'
  local file path: 'C:\Users\biocbuild\AppData\Local/R/cache/R/BulkSignalR/database/b0b436d46bfb_SignalR.db'
  reason: Failed writing received data to disk/application [partage-dev.montp.inserm.fr]: Failure writing output to destination, passed 16384 returned 0
Warning: bfcadd() failed; resource removed
  rid: BFC1
  fpath: 'https://partage-dev.montp.inserm.fr:9192/CBSB/SignalR/database/SignalR.db'
  reason: download failed
Error in .util_download(x, rid[i], proxy, config, "bfcadd()", ...) : 
  bfcadd() failed; see warnings()
Calls: createDatabase ... .cacheAdd -> <Anonymous> -> <Anonymous> -> .util_download
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  > library(testthat)
  > library(BulkSignalR)
  Local "database" is up to date.
  
  adding rname 'SignalR.db'
  Error: package or namespace load failed for 'BulkSignalR':
   .onLoad failed in loadNamespace() for 'BulkSignalR', details:
    call: BiocFileCache::bfcrpath(bfc, rnames = basename(url))
    error: not all 'rnames' found or unique.
  In addition: Warning message:
  In value[[3L]](cond) : 
  trying to add rname 'SignalR.db' produced error:
    all(rtype == "web" | file.exists(fpath)) is not TRUE
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/BulkSignalR.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL BulkSignalR
###
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'BulkSignalR' ...
** this is package 'BulkSignalR' version '0.99.22'
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BulkSignalR)

R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(BulkSignalR)
Local "database" is up to date.

adding rname 'SignalR.db'
Error: package or namespace load failed for 'BulkSignalR':
 .onLoad failed in loadNamespace() for 'BulkSignalR', details:
  call: BiocFileCache::bfcrpath(bfc, rnames = basename(url))
  error: not all 'rnames' found or unique.
In addition: Warning message:
In value[[3L]](cond) : 
trying to add rname 'SignalR.db' produced error:
  all(rtype == "web" | file.exists(fpath)) is not TRUE
Execution halted