Mustafa Erhan Ozer
| Snapshot Date: 2025-02-03 13:40 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-04 11:42 -0500 (Tue, 04 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4716 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4478 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4489 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4442 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2100/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-02-04 06:27:48 -0500 (Tue, 04 Feb 2025) |
| EndedAt: 2025-02-04 06:34:30 -0500 (Tue, 04 Feb 2025) |
| EllapsedTime: 401.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.7.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1327,3692,728,2952,1186,1968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26291,1371,53632,1435,5741,3953
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,6748,1869,170302,57128,5052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5078,1544,57176,23062,29928,3283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1956,10135,256471,4357,5723,506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 189,3813,7345,229,632,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3357,1392,344,5276,5971,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50484,119559,1890,151306,1149,5824
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7292,256471,178,1116,105372280,487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,4704,114548,5265,105372280,476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2785,407011,51548,10352,9526,374291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51004,1232,8932,3728,1490,4594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2584,1277,90865,407007,486,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7275,2952,5745,65993,6582,5972
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1890,4976,410,3309,2516,27232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 409,407040,2517,5096,2952,5588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5563,9415,2052,538,2235,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406982,64240,5781,1645,4852,2904
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5069,4358,9868,2990,23556,3948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51116,5473,1182,158,3667,80331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,55818,7915,632,55486,498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5092,283459,5799,7275,7915,3065
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79731,2875,1491,665,367,10250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1072,728294,5499,255231,3569,3054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2688,79934,6775,5095,10159,51601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6517,359,1509,10857,138050,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7056,1339,2166,63899,1075,2334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80222,4233,4357,1636,84340,2335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,776,8431,5207,6389,3569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,6721,1201,4694,5321,2200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2113,57761,6576,6550,1950,999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,10577,768239,4288,5901,9415
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56999,6248,28234,94235,387082,1443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1491,1950,6579,4719,2006,1558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1543,1394,138050,9479,11035,7319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 567,51021,4337,123099,57818,3117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3091,3557,1807,338,201595,644096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 627,2159,1812,374291,23530,406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 844,7025,145264,7036,1621,90865
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10845,60386,253943,7076,5346,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,1028,496,26235,384,9698
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2785,654,10008,291,138050,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9382,2762,355,11255,5824,6462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4860,57085,2798,91942,3162,3081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5595,56922,57761,35,5428,6183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653509,824,1374,9377,4669,585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6821,81689,51103,55037,341,5506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7038,3558,9370,2647,4718,325
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51,593,84701,6339,5257,51206
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50814,54704,92609,28976,406922,498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2310,54575,55630,54148,2597,54675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 825,29968,51204,4035,1608,3980
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9698,57001,91452,91949,3291,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6513,2786,358,4705,2639,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 596,652,5122,6389,3308,55270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440138,401,6183,2785,133522,8659
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387787,11019,55967,200186,1499,51441
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57570,3382,9969,5830,6183,6948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5562,6492,51555,9971,253943,4319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8471,9091,627,51548,26088,285848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 587,84239,26354,5372,929,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2119,6339,57620,406913,391051,8772
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 655,23411,80267,5193,84693,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,7384,210,506,79001,5092
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,2194,189,1080,56052,3773
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51660,25813,6821,7428,64919,7220
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,116228,10000,3486,509,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6390,6338,23129,18,23411,51555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,2542,80201,26003,8462,2697
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84705,10352,1594,7025,28951,6556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,7381,940,929,2792,114814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114814,7320,3570,2260,27344,57818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1678,3486,185,131118,1056,4118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7388,1738,8471,140803,3486,79133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6401,10457,92609,2063,8600,51167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9241,5276,842,55486,131669,3938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84572,796,51241,57818,8799,2919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57001,5255,57048,2639,3759,55037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,2731,30061,51004,89874,10159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54968,599,3339,6338,5176,57104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5601,64788,63899,308,5617,22820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5473,80347,51099,265,3119,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4967,2155,1524,959,6536,5054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2516,9409,8517,79633,27247,10457
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 211,347411,2180,54600,1807,2571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,8473,5825,4803,2936,170302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11232,8854,2677,9180,90865,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3065,5515,5370,55526,1869,200539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4729,644096,2584,1080,11019,3123
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3172,4842,3062,55902,91647,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3284,5465,10874,15,7037,2271
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3991,5447,4744,6602,325,10875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 391051,53905,1650,2559,10221,9526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,1116,5370,55572,11136,6772
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54798,493753,50507,6718,1646,3030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,7037,5592,4842,2200,406906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9021,54576,25813,9479,120227,81033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3440,353,5584,2908,493,4232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3091,2571,5228,3113,51422,6897
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5277,10577,11222,1801,2717,642489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,10965,4256,10159,1347,55863
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51021,6347,84987,3162,79587,3066
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,4233,124976,6340,1813,84947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,4726,4312,54106,7026,3240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6319,79776,7376,9380,170302,7515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116931,1345,166785,5590,406934,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55331,85446,51004,3479,2806,197
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,6514,8743,5270,55630,55699
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 411,594,941,2166,10423,51604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26291,10644,3980,640,29843,51024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,85569,3418,11222,131669,7132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5315,26521,3569,1019,819,7428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3576,2992,3308,50507,3115,5207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5194,5551,2878,2056,6462,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,3658,4976,2303,3700,5277
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
127.96 1.87 130.04
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.74 | 0.07 | 1.94 | |