Mustafa Erhan Ozer
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:11 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-19 11:18:39 -0400 (Wed, 19 Mar 2025) |
| EndedAt: 2025-03-19 11:26:59 -0400 (Wed, 19 Mar 2025) |
| EllapsedTime: 499.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 116228,2752,4828,2524,2030,8642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2280,54931,5590,2169,6391,10891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7167,347,64601,5901,84987,582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51608,22797,2487,54896,266,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2115,6564,11095,406991,2948,1594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3486,10842,4318,3291,11131,410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,64801,292,6925,1337,7528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6403,81033,6748,5919,3489,929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,10000,6183,28958,7494,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55967,1443,685,1769,23410,3356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6382,6347,10269,2949,1346,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1029,7289,4548,7376,518,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8854,1468,10874,285362,64241,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,22796,55005,11231,6199,4256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2790,1491,886,2119,84334,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10466,643181,9054,2495,9498,5331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5105,6908,6748,112817,10991,3486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10102,9759,3507,54148,2908,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407007,3684,213,55699,5971,1200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 836,6387,1718,80339,2760,1327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407010,292,2587,574447,942,1509
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9095,4160,3586,3954,1491,11132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7124,8675,7389,51738,10891,23516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 471,427,56652,4286,558,6342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,3101,4288,7056,79001,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23062,128486,1629,292,5228,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5563,5467,123,7386,3651,10157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2118,1347,389692,9945,84833,1636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3073,4338,22901,2628,221458,57017
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54802,5781,6354,493,9968,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3728,656,221935,123,2571,4654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84987,706,4843,3759,1906,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5071,54210,1490,23054,10891,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4828,2642,1337,4889,10642,940
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3483,929,90480,5743,54896,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2303,1393,84701,25813,6531,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2998,100303755,9095,27010,64601,51119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1022,10991,56919,7018,80222,513
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285362,9560,2740,81034,5744,5581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1394,6571,1029,7038,7132,48
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 795,2936,3156,4860,23291,6198
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,3643,2053,170302,1268,6821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55270,5728,4314,8862,81034,3783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54578,5595,1889,5728,134,6898
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 574447,4137,7421,213,1585,5580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6716,83985,11019,1493,241,10457
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 191,5741,1019,10842,3033,7124
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7879,5581,53632,6649,6932,3558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6236,570,1672,79796,64805,1369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5236,241,2745,2581,1514,6522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2944,6531,23516,6517,1956,6183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,79068,6891,2155,1802,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,5476,445,5860,11213,200810
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4697,285362,4656,6492,3954,94235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4337,2548,11131,7355,2646,1352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 958,629,825,50506,183,2717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3600,84275,5506,729238,6715,3460
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10226,3692,89874,5069,406906,26227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,3945,5009,123099,128486,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2034,5625,56729,3552,8678,9498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130589,3309,2693,114814,367,407024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10559,80222,3630,1769,3358,5071
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 189,57817,5515,1080,2820,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 112817,3995,4594,1789,197322,10316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1672,51167,4232,1443,8678,2835
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,1185,84987,2697,2713,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64805,1629,2712,3630,6584,26191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 374291,1072,4656,6464,9451,113235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 265,708,4780,6569,7275,183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51099,2109,3373,570,1175,706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 196385,1649,55768,83693,2152,200810
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53905,6374,5315,55024,10221,2119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1499,153642,6901,2475,4988,948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100,217,51316,29078,3157,10013
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5346,411,2937,10128,79144,201595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55331,4853,26762,2740,2597,23175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1244,10457,4720,2108,2653,51052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5538,8195,5331,6262,4233,38
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3157,3141,729230,25915,7515,8195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4598,2053,83693,5288,2584,664
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 477,255231,137994,3728,3172,203859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389,4720,3357,7941,9663,283459
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6009,197322,116931,51206,3995,4126
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5584,2572,79602,498,64900,4842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388,29960,2778,1327,10845,6721
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2820,341,43,325,3480,2335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5925,2876,6718,80222,1019,50484
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,7276,155,4758,427,2590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79602,821,1675,7097,57104,37
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,1607,1968,6514,2678,84239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7471,23395,2847,5122,4143,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6748,9429,3685,1909,643181,210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2348,5276,23530,7099,57085,3710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 137994,513,344905,4159,7098,55937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54806,79001,60684,2876,9021,90624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5277,1558,5581,5365,55750,60386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 383,3240,10644,5428,4729,55970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5728,2792,27141,1992,231,867
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,79949,7097,7384,1347,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1910,2864,89874,9672,6794,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406947,5792,51458,9692,4744,6402
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2587,11132,2110,2310,6556,3663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1401,1641,55278,1282,79661,1582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6505,3440,84947,91949,7276,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,3980,10159,54549,3684,54968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2864,325,58528,5052,23389,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55768,5507,351,2517,9692,4160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7384,4724,4312,1803,1355,2793
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5538,27235,4709,100506742,7036,6932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6678,23274,15,55644,153,118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5276,9420,123263,57761,1815,6548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5745,2745,84902,4524,5160,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3931,2161,5498,1327,84833,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10643,2056,55970,55005,1489,7097
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,8604,3284,516,2694,51144
--> return NULL...
2025-03-19 11:26:48.044 R[72032:306671650] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
235.095 1.832 239.399
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.978 | 0.049 | 1.623 | |