Mustafa Erhan Ozer
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:12 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-18 12:14:00 -0000 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 12:19:52 -0000 (Tue, 18 Mar 2025) |
| EllapsedTime: 351.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 92609,7941,4000,590,91949,5702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,2646,4842,91647,5236,6401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3692,79087,4669,401,27125,1080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,5092,1312,23395,10857,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2992,8722,513,57761,7386,2542
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 929,6890,6556,27141,55037,54476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1497,3087,3759,79602,2788,8195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,3122,25828,6678,84833,3458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,3074,2677,6009,8842,2597
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,2303,1644,5538,406991,54148
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8651,5727,55970,4688,114814,3958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4035,5122,5506,2055,2194,929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5161,9927,3552,79144,795,3174
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63874,6324,10560,551,56302,1203
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 340024,183,3073,81034,118,2998
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,3703,2992,706,10000,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,2524,3988,27010,23395,844
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2629,8802,7355,2878,55283,10891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1444,4137,8818,5068,293,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51738,9692,1514,10841,6794,6891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9382,9409,155,11254,10059,3670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25915,9104,7391,56652,124454,55750
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1909,5019,7388,389,1581,406913
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55503,9663,5654,5270,2919,7384
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5901,8879,4855,6569,1509,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6821,155,1080,7078,1071,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9868,407010,64432,11095,116085,1348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5594,9868,7422,490,54600,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,81034,3030,3117,7381,5919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6571,5313,8473,56259,1234,28958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4143,1186,359,9945,4159,3899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,285126,7942,8842,5329,2717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790,706,389,6341,847,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1649,6536,2348,8600,2642,5277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25915,4232,7048,479,8651,128486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55340,3700,51082,63892,51422,55343
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,27429,9945,5970,405,9526
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5601,2247,4915,1497,50674,6536
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1585,6906,6718,122961,10316,10682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5160,57511,1369,23038,6584,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283120,56623,1646,572,169792,1582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407021,350,255231,9630,52,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1352,4137,2119,5473,64601,3692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51083,55340,410,292,5702,361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2592,1393,2158,5264,2115,27010
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4700,5331,10135,389692,7220,1185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1992,599,6788,4719,3074,3356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5728,84701,26354,2903,5741,7388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,10577,338,2517,55034,5009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7941,5277,9698,23600,2952,26088
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1636,347411,1801,3440,406913,9374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,6522,3480,7390,81034,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3174,55967,81033,10857,9332,4719
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1636,3382,51085,3295,79783,10135
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4040,18,7248,158,5625,64240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100529063,23389,28951,2166,7412,6789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 33,197322,1022,6521,6519,90624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51241,10159,6263,4311,6464,5291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29881,7052,6548,23054,104909134,197322
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,51458,91949,8802,387,4709
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4118,3767,89866,5789,7919,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6898,4314,6392,493753,3630,347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3899,2305,3155,11093,2904,686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347411,23395,57817,1442,2904,84342
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1634,5261,7372,2638,63874,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6319,118,3162,4306,2888,84833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2645,84557,585,6531,125170,5009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 183,3598,3569,53335,200205,26354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2642,84062,5551,9927,2683,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,6833,1329,4126,5255,3791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1356,142,4125,27235,1056,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 138050,23062,4758,6833,6821,60
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3141,10221,2673,4159,3115,79776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,728294,3576,5096,2571,55270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91647,7320,23400,6324,4688,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,3486,3767,89866,2584,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,1594,8431,27247,7428,283120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10580,5805,1185,54805,4942,6354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 435,351,4543,91574,1497,836
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 217,1589,2904,1346,3600,6868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4306,7942,2934,5741,406947,790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1803,847,28951,54575,3643,5256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1589,26175,51083,119559,148979,4023
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2791,79053,7372,3670,836,685
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1374,51116,599,10845,10,9698
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25821,4233,64241,3562,140803,23654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,2683,55034,1363,338328,64788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51103,3119,4878,6571,54552,35
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 479,55503,1558,129787,9370,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5592,3054,2244,3329,2161,1646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,79087,2588,64240,8462,7386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 38,55331,9663,1678,6550,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54968,5830,29947,3596,1890,79087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4313,9241,4015,122961,388372,3598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1201,64131,6821,2785,50943,27329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51004,50507,3240,8504,9698,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,94235,11093,3283,4688,7248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9054,22978,23417,121268,3423,55858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81034,1369,6647,7528,5091,387082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29843,4704,2588,79585,1471,6584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55343,558,1080,169026,84275,1813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10911,26175,728294,55818,58528,5306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7084,6789,6182,256471,8722,788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169792,8560,5599,339,5730,3481
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28958,644974,241,3062,2113,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6341,5161,23530,1789,9575,131669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8862,2798,7252,56623,23163,491
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4338,81704,186,410,338,81689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285126,27232,9409,2798,4357,6536
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,10135,4143,401,410,90480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,3576,2896,3460,10644,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4314,91869,445,80201,56999,22933
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55283,347411,27249,123263,11096,4729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,2200,1645,1558,57505,2101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6356,216,1019,2538,55967,7407
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
75.765 1.954 78.377
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.851 | 0.028 | 1.691 | |