Mustafa Erhan Ozer
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:09 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-18 10:50:10 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 11:00:58 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 647.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 201595,847,11231,518,1072,1203
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26003,9445,160287,11096,5631,5836
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,186,8813,23274,2310,7480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6535,1737,120227,2109,5476,5189
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406938,55644,229,10423,4846,5236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1072,5744,2113,2516,2934,8675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10935,999,79572,4543,92667,116519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 686,6522,432369,728294,5313,4023
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7376,10116,4137,85446,84706,1353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60386,2791,54344,2678,5291,23236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,4889,1594,25828,5277,26191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10875,23543,55037,84833,79144,5713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91574,100303755,2053,3958,197,4942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1558,868,7124,3087,2629,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4502,407011,56606,4968,57215,5213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2647,50943,5740,4779,56302,112817
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7084,4758,155,4860,9377,587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,57511,1347,406947,104,1203
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5078,3073,4598,2593,653509,1802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84447,7274,513,9868,1675,2146
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2908,89866,5590,183,51300,7915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2571,57570,1678,2099,374291,3643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2101,858,123263,23411,3356,25821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,266,440138,81570,3098,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 539,8517,5443,4144,6582,10524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7391,51094,406938,1080,6908,1558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1185,132158,2110,3416,5126,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84275,81570,23395,80339,1806,432369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5306,6338,6720,4803,516,84705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,84342,5184,4247,4864,4144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,10642,5313,1281,2548,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6198,10059,5369,5009,58528,1801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4846,266,3559,2752,388743,51316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29968,55818,64801,5919,51167,572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23654,10845,6402,388962,55670,5053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 183,51085,131669,999,2890,5078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1890,81689,1182,7916,22852,23163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2653,999,80207,4524,10316,7840
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3600,138050,858,1182,118,1591
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10524,54148,1443,844,5009,3990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 958,8202,10062,90865,4697,4723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91942,367,5214,6934,3030,55503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2776,3700,6505,185,3507,51441
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4899,4337,11096,11232,643181,3759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8567,5369,3712,3485,8639,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23400,255738,6890,7018,140803,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8743,128486,2696,23389,124976,5660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,2146,284958,6319,84572,51116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10226,239,123283,330,2767,26517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5770,23411,7412,111240474,4159,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9971,10352,5581,92483,23409,2524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54968,200205,29926,4282,788,3627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6383,23543,3416,2629,105372280,64900
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2717,151,4524,57107,3570,197
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 189,9759,23291,8050,2146,55967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10159,2334,5925,10226,5499,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4967,6772,4853,150379,7040,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51478,1813,463,212,80070,5184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2998,1361,3033,2903,5286,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4023,7248,353500,9420,65080,4143
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79731,3329,85365,2720,256471,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5214,5830,1559,1672,64801,2101
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4306,7915,79736,339,2641,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3339,55858,1340,2157,55572,6999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,2100,1514,3312,3033,51082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51555,7942,384,57104,2689,3417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3117,6182,5592,5406,79934,6199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,4128,1361,388585,3684,694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1346,6341,11232,4544,4128,5770
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,5447,2695,8651,1361,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,5373,3373,80070,2806,3060
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9559,55331,91647,599,23556,211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8862,2890,5828,4118,2587,6925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3099,54205,3098,2805,28951,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2395,471,6721,2559,2348,79783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2799,51117,9997,2776,308,655
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1508,5563,7841,10559,4153,11035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54539,4887,4319,7019,5367,8743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,7225,15,387082,2034,7078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57505,60,4232,5330,4594,4627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 516,51081,85476,2052,27329,5601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,6548,2539,101180976,5256,406991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56652,7100,5825,2645,3283,6554
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,2919,790,161247,1621,1056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 65993,54806,1149,1675,4879,1641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,119559,1337,406934,64801,440503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,55343,2690,51555,1337,8651
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9091,5967,83439,26088,2247,63899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55270,104,5654,293,6718,79633
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2593,284184,3158,255231,2260,25828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4049,56302,3417,6390,60684,2784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 788,1071,177,3162,3949,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,3091,207,84274,6576,6505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,79944,4035,5728,3988,795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9131,549,1815,92483,3375,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 35,801,10891,1351,23543,7421
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11254,284958,196385,100303755,868,2597
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2720,1593,1621,2159,410,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84902,4594,5193,34,84705,3418
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5498,64087,114814,116931,642489,493753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4040,2115,11222,6925,8722,1812
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1544,3899,6897,123,5009,506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5367,216,5660,1409,54210,356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3062,54931,92935,655,5195,10383
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1371,5327,37,54805,7035,6888
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 38,5501,5830,9997,3934,57215
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6391,5789,2158,1813,79633,7018
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3489,858,26354,498,3460,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3309,1675,5828,134,132,2693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7157,4160,255308,9332,11035,5330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 219,5176,89874,999,2099,3174
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7351,54901,479,5306,2334,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8665,790955,9512,656,2100,3708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5054,8714,8842,3458,100128525,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3481,2835,84987,477,4714,4543
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
179.029 2.289 184.291
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.431 | 0.078 | 2.157 | |