Mustafa Erhan Ozer
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:06 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-18 03:35:54 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 03:40:40 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 285.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 64131,80207,10221,55331,241,4700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1716,2946,50943,29947,9409,3440
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 35,5476,1443,824,1072,2034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9365,8309,9420,131669,8877,857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55331,6351,249,57085,84889,5095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55750,1201,8600,23462,1392,336
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6834,4854,10195,728294,3939,15
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3562,57570,23474,84693,6392,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,3423,8803,53905,7841,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 33,7026,10269,2101,5743,79068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10250,111,54567,409,64241,4684
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3624,84239,2805,64240,57104,120227
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5551,2052,23369,80339,1327,6898
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,91949,105372280,55024,3065,51116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3948,3066,55768,9779,3122,1355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7471,492,283120,4942,6248,255231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9575,4968,1718,6535,11095,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3712,8567,3576,7407,23389,2992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3990,587,2864,8462,79585,1277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407006,2683,56938,7077,3728,256471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25839,28976,5590,1468,665,6609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6928,7297,7466,3953,5331,7025
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,6324,31,181,57380,105372280
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9971,51458,2303,6391,2310,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285362,4143,7376,5092,150379,6439
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57017,6901,7421,685,2308,10008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57048,7098,23516,55532,7389,2184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 788,9445,4758,1468,4988,2992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1234,2934,83884,2805,3423,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3091,629,210,284184,15,9779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4598,6786,10724,90865,7941,6392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,9692,2788,6356,84300,5551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,6324,9759,6263,8517,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6554,5230,51081,5080,728294,4543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407011,2678,3938,51241,9414,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8642,92609,11254,255308,2170,6571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 35,55503,3658,3875,6519,406947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5787,3551,23409,5315,5078,5409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4256,796,9526,3954,25821,3030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,1555,1201,2310,26235,336
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4712,6390,23462,4760,55970,63931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1950,2030,506,11093,1583,5105
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1593,1807,325,54539,116085,2908
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2760,133522,3339,56919,22796,54901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2990,471,7916,8309,5189,5078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,3630,197131,9380,55526,1802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 205327,406906,1352,10999,3034,64788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9380,5091,650,4724,2155,8945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,4023,5189,599,7919,6565
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,6439,9415,1728,83693,10841
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3458,4842,7056,5594,27089,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,409,10580,2309,51081,5328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2990,5191,64241,2548,2328,55753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23409,4878,3490,2784,2305,1909
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2952,81033,5445,23291,5970,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5373,5629,793,795,51548,26354
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8772,5745,121268,54896,27329,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6351,128486,83854,90865,55572,1813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23291,476,5629,4049,28234,169026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 325,83693,1992,10062,3480,8772
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,3416,2787,122961,821,858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,1806,9377,79949,5327,89874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7515,3600,6868,427,407011,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7292,55331,2762,7466,3418,5053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406934,9968,25813,10159,79587,79934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 384,1363,407011,54896,150,4594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2990,7289,650,7077,53335,64919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2559,23474,6564,2314,285362,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56945,55937,1586,116519,2937,5465
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6890,2303,1543,8722,1524,84889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5213,5105,5468,54210,825,629
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 201305,10841,2990,4627,10116,6616
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56922,3598,203859,132,4000,1029
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51083,6339,2155,210,3490,2739
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51079,4714,162417,35,2864,2677
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4159,23400,5825,85446,3931,100131801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1909,3073,6374,54809,644096,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79731,10059,32,1027,9663,706
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8722,1361,5184,471,54901,6934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3779,23395,51,7384,406991,644096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,3991,4722,51099,4338,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7052,4023,133,3295,114548,23274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4744,9056,27125,5563,6515,4718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23654,5276,4357,3552,118,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5167,1806,50943,8678,811,821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,55278,92667,538,55630,6550
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79736,1644,5925,23175,2806,3791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7019,8050,51422,2778,205327,4288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,27141,57017,1376,11019,2784
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5162,2593,1230,2119,6354,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,4153,4144,2834,599,8803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10457,7157,51176,2101,2690,790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51119,5162,55788,6718,7480,55186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388372,4159,406934,81033,6382,6718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2166,128486,7018,25821,23516,26088
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387787,5467,6786,6391,7351,1374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3172,477,84317,186,6647,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 387787,4314,374291,6462,178,10423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5327,51004,5962,1636,10383,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53905,5095,201595,10000,8932,2683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406922,2108,5584,130120,10875,1234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2335,9672,6199,149461,5162,23411
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6515,123263,1376,84317,203859,5443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 540,7287,6715,4035,94235,56623
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4716,203068,6324,779,29881,56729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4318,50943,4684,4724,23543,3728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7220,1491,1812,2592,100529063,2303
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28957,64689,81704,8694,10250,1650
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7025,60684,462,219,6390,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,51458,56945,64788,5345,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6649,4015,10730,51601,406906,3958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,152926,2334,2180,5364,100529063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 129787,2200,65985,4149,4887,56623
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7424,7052,6531,55343,374291,5331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85446,2161,26354,6897,166785,268
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
65.885 2.748 68.740
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.728 | 0.084 | 0.951 | |