Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-17 12:12 -0400 (Mon, 17 Mar 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4399 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 979/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.12.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: HPiP |
Version: 1.12.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HPiP_1.12.0.tar.gz |
StartedAt: 2025-03-14 07:05:55 -0000 (Fri, 14 Mar 2025) |
EndedAt: 2025-03-14 07:12:22 -0000 (Fri, 14 Mar 2025) |
EllapsedTime: 387.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings HPiP_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck’ * using R version 4.4.3 (2025-02-28) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 35.299 0.304 35.755 corr_plot 34.820 0.164 35.043 FSmethod 33.976 0.251 34.292 pred_ensembel 17.756 0.791 17.420 enrichfindP 0.515 0.024 23.024 getFASTA 0.128 0.007 5.812 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.20-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 97.624854 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.356508 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.097113 iter 10 value 94.209303 iter 10 value 94.209302 iter 10 value 94.209302 final value 94.209302 converged Fitting Repeat 4 # weights: 103 initial value 94.513234 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 101.202302 iter 10 value 93.930732 final value 93.930686 converged Fitting Repeat 1 # weights: 305 initial value 101.230365 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 107.523939 iter 10 value 94.436793 iter 10 value 94.436793 iter 10 value 94.436792 final value 94.436792 converged Fitting Repeat 3 # weights: 305 initial value 97.332374 iter 10 value 93.834118 iter 20 value 93.625093 iter 30 value 93.623580 final value 93.623578 converged Fitting Repeat 4 # weights: 305 initial value 107.091566 final value 94.275362 converged Fitting Repeat 5 # weights: 305 initial value 97.709682 final value 94.275363 converged Fitting Repeat 1 # weights: 507 initial value 111.391379 final value 94.275362 converged Fitting Repeat 2 # weights: 507 initial value 121.115320 final value 94.484210 converged Fitting Repeat 3 # weights: 507 initial value 105.761557 final value 94.275362 converged Fitting Repeat 4 # weights: 507 initial value 112.892776 iter 10 value 94.484248 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 98.885449 final value 94.275362 converged Fitting Repeat 1 # weights: 103 initial value 96.646915 iter 10 value 94.502589 iter 20 value 94.486441 iter 30 value 90.019384 iter 40 value 89.245640 iter 50 value 86.900783 iter 60 value 85.755696 iter 70 value 85.540311 iter 80 value 84.172302 iter 90 value 81.022818 iter 100 value 80.698870 final value 80.698870 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 102.789302 iter 10 value 94.479111 iter 20 value 90.843888 iter 30 value 86.622190 iter 40 value 86.174578 iter 50 value 84.803362 iter 60 value 83.979924 iter 70 value 81.557690 iter 80 value 80.529288 iter 90 value 80.454707 iter 100 value 80.446701 final value 80.446701 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 97.688369 iter 10 value 94.514732 iter 20 value 88.473243 iter 30 value 87.571503 final value 87.569714 converged Fitting Repeat 4 # weights: 103 initial value 101.426771 iter 10 value 93.846653 iter 20 value 93.470270 iter 30 value 89.171088 iter 40 value 84.841335 iter 50 value 84.069863 iter 60 value 83.968428 iter 70 value 83.771742 iter 80 value 83.739669 iter 90 value 83.523602 iter 100 value 81.685906 final value 81.685906 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 100.160042 iter 10 value 94.488550 iter 20 value 94.121740 iter 30 value 93.414958 iter 40 value 90.206719 iter 50 value 82.686049 iter 60 value 81.174770 iter 70 value 80.530943 iter 80 value 80.373891 iter 90 value 80.337638 iter 100 value 80.314510 final value 80.314510 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 112.879014 iter 10 value 93.945166 iter 20 value 85.798566 iter 30 value 85.491681 iter 40 value 82.660339 iter 50 value 81.782949 iter 60 value 81.138611 iter 70 value 80.919794 iter 80 value 80.810938 iter 90 value 80.718869 iter 100 value 80.251551 final value 80.251551 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.862101 iter 10 value 94.733551 iter 20 value 93.641363 iter 30 value 93.368562 iter 40 value 93.263414 iter 50 value 85.387597 iter 60 value 85.048145 iter 70 value 82.898482 iter 80 value 81.512338 iter 90 value 80.625765 iter 100 value 80.443443 final value 80.443443 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.407395 iter 10 value 93.395711 iter 20 value 90.118422 iter 30 value 88.565794 iter 40 value 83.297794 iter 50 value 81.461515 iter 60 value 80.591921 iter 70 value 79.938605 iter 80 value 79.204822 iter 90 value 78.652599 iter 100 value 78.490302 final value 78.490302 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 117.882371 iter 10 value 95.202280 iter 20 value 93.250570 iter 30 value 89.494581 iter 40 value 84.528362 iter 50 value 81.489381 iter 60 value 81.009256 iter 70 value 80.971443 iter 80 value 80.880071 iter 90 value 80.401986 iter 100 value 79.760077 final value 79.760077 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 119.204299 iter 10 value 94.228215 iter 20 value 88.238720 iter 30 value 83.648758 iter 40 value 81.547172 iter 50 value 81.220683 iter 60 value 81.048446 iter 70 value 80.719165 iter 80 value 80.631891 iter 90 value 80.594280 iter 100 value 80.431363 final value 80.431363 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.899263 iter 10 value 94.567966 iter 20 value 94.154129 iter 30 value 92.098597 iter 40 value 89.292448 iter 50 value 88.639858 iter 60 value 84.442198 iter 70 value 81.095131 iter 80 value 79.830534 iter 90 value 79.114712 iter 100 value 78.934794 final value 78.934794 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 123.208342 iter 10 value 94.857539 iter 20 value 94.195859 iter 30 value 93.695570 iter 40 value 92.467920 iter 50 value 91.755193 iter 60 value 91.447410 iter 70 value 84.938649 iter 80 value 84.259702 iter 90 value 82.403813 iter 100 value 81.032644 final value 81.032644 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.995963 iter 10 value 96.321930 iter 20 value 89.000112 iter 30 value 87.941515 iter 40 value 85.254551 iter 50 value 83.953054 iter 60 value 83.617357 iter 70 value 82.284530 iter 80 value 81.724446 iter 90 value 80.909812 iter 100 value 79.948114 final value 79.948114 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.957343 iter 10 value 95.521059 iter 20 value 94.969962 iter 30 value 94.398256 iter 40 value 86.946863 iter 50 value 82.793901 iter 60 value 82.438734 iter 70 value 82.081307 iter 80 value 81.617014 iter 90 value 80.202553 iter 100 value 79.585358 final value 79.585358 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.225152 iter 10 value 94.517939 iter 20 value 93.494480 iter 30 value 88.910803 iter 40 value 85.895580 iter 50 value 84.637054 iter 60 value 83.131455 iter 70 value 81.447754 iter 80 value 80.293044 iter 90 value 80.131032 iter 100 value 80.039126 final value 80.039126 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.295524 final value 94.485818 converged Fitting Repeat 2 # weights: 103 initial value 97.567619 final value 94.485759 converged Fitting Repeat 3 # weights: 103 initial value 94.495446 final value 94.486025 converged Fitting Repeat 4 # weights: 103 initial value 98.596882 final value 94.485973 converged Fitting Repeat 5 # weights: 103 initial value 95.362693 final value 94.485886 converged Fitting Repeat 1 # weights: 305 initial value 100.398468 iter 10 value 94.280522 iter 20 value 94.276863 iter 30 value 93.697791 final value 93.688574 converged Fitting Repeat 2 # weights: 305 initial value 102.616343 iter 10 value 94.352853 iter 20 value 94.346556 iter 30 value 94.269591 iter 40 value 93.730623 iter 50 value 93.633832 iter 60 value 93.625058 iter 70 value 88.611647 iter 80 value 82.025597 iter 90 value 81.655331 iter 100 value 81.641020 final value 81.641020 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 96.083584 iter 10 value 94.488778 iter 20 value 94.484297 final value 94.484285 converged Fitting Repeat 4 # weights: 305 initial value 102.169457 iter 10 value 94.489068 iter 20 value 94.378385 iter 30 value 93.689760 iter 40 value 93.689128 final value 93.689032 converged Fitting Repeat 5 # weights: 305 initial value 94.825955 iter 10 value 94.487226 iter 20 value 94.351160 iter 30 value 93.628402 iter 40 value 90.140942 iter 50 value 89.407813 iter 60 value 89.334758 final value 89.299868 converged Fitting Repeat 1 # weights: 507 initial value 98.805974 iter 10 value 94.491431 iter 20 value 93.481254 iter 30 value 93.309042 final value 93.299853 converged Fitting Repeat 2 # weights: 507 initial value 98.885541 iter 10 value 94.490013 iter 20 value 94.277173 final value 94.275605 converged Fitting Repeat 3 # weights: 507 initial value 100.580593 iter 10 value 94.283712 iter 20 value 94.277265 iter 30 value 90.058023 iter 40 value 87.134837 iter 50 value 85.031488 iter 60 value 84.981963 iter 70 value 84.974554 iter 80 value 84.973224 iter 90 value 84.972760 final value 84.972365 converged Fitting Repeat 4 # weights: 507 initial value 96.806802 iter 10 value 94.284187 iter 20 value 94.278839 iter 30 value 94.277763 iter 40 value 93.998109 iter 50 value 92.506091 iter 60 value 90.565877 iter 70 value 90.522023 final value 90.522008 converged Fitting Repeat 5 # weights: 507 initial value 110.194811 iter 10 value 94.273438 iter 20 value 94.217721 iter 30 value 94.213141 iter 40 value 94.209461 final value 94.209424 converged Fitting Repeat 1 # weights: 103 initial value 113.663503 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 104.148969 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 111.501703 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 102.191314 final value 94.026542 converged Fitting Repeat 5 # weights: 103 initial value 95.697413 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 113.860262 iter 10 value 94.473770 final value 94.473684 converged Fitting Repeat 2 # weights: 305 initial value 103.680581 iter 10 value 91.558304 final value 91.556378 converged Fitting Repeat 3 # weights: 305 initial value 97.077677 iter 10 value 94.118631 final value 94.026542 converged Fitting Repeat 4 # weights: 305 initial value 115.805598 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 108.745621 final value 94.026542 converged Fitting Repeat 1 # weights: 507 initial value 104.281364 iter 10 value 87.408887 iter 20 value 86.881808 iter 30 value 86.880177 final value 86.880173 converged Fitting Repeat 2 # weights: 507 initial value 102.602975 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 99.413166 iter 10 value 85.408503 iter 20 value 85.351353 final value 85.348401 converged Fitting Repeat 4 # weights: 507 initial value 125.281631 iter 10 value 93.701658 iter 10 value 93.701657 iter 10 value 93.701657 final value 93.701657 converged Fitting Repeat 5 # weights: 507 initial value 121.759252 final value 94.443182 converged Fitting Repeat 1 # weights: 103 initial value 103.791629 iter 10 value 88.842758 iter 20 value 87.008275 iter 30 value 86.908106 iter 40 value 86.296271 iter 50 value 85.839466 iter 60 value 85.469822 iter 70 value 85.366055 final value 85.364438 converged Fitting Repeat 2 # weights: 103 initial value 104.637513 iter 10 value 94.473977 iter 20 value 93.923512 iter 30 value 93.904147 iter 40 value 93.900121 iter 50 value 93.899932 iter 60 value 93.899865 iter 70 value 93.760171 iter 80 value 89.504646 iter 90 value 88.979278 iter 100 value 88.715664 final value 88.715664 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 100.133182 iter 10 value 94.025405 iter 20 value 88.969046 iter 30 value 88.273902 iter 40 value 84.499730 iter 50 value 83.551394 iter 60 value 83.181505 iter 70 value 83.061454 iter 80 value 83.026007 final value 83.025834 converged Fitting Repeat 4 # weights: 103 initial value 106.545044 iter 10 value 94.112827 iter 20 value 93.842349 iter 30 value 93.265516 iter 40 value 87.855293 iter 50 value 86.366571 iter 60 value 84.131896 iter 70 value 83.754649 iter 80 value 83.569948 iter 90 value 83.258824 iter 100 value 83.131202 final value 83.131202 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 103.713433 iter 10 value 94.431879 iter 20 value 92.319557 iter 30 value 91.658649 iter 40 value 90.032011 iter 50 value 84.030275 iter 60 value 83.123217 iter 70 value 82.932978 iter 80 value 82.860976 iter 90 value 82.790969 iter 100 value 82.631850 final value 82.631850 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 121.858988 iter 10 value 94.483367 iter 20 value 92.979788 iter 30 value 85.198918 iter 40 value 84.229735 iter 50 value 83.086463 iter 60 value 82.612260 iter 70 value 82.207653 iter 80 value 82.119511 iter 90 value 82.071384 iter 100 value 81.768513 final value 81.768513 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.159698 iter 10 value 94.595601 iter 20 value 93.814703 iter 30 value 86.793772 iter 40 value 84.914190 iter 50 value 84.268990 iter 60 value 84.165911 iter 70 value 83.553951 iter 80 value 83.097900 iter 90 value 82.714358 iter 100 value 82.597209 final value 82.597209 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.170145 iter 10 value 95.461783 iter 20 value 93.654033 iter 30 value 86.150545 iter 40 value 84.134919 iter 50 value 83.389470 iter 60 value 82.775975 iter 70 value 82.623404 iter 80 value 82.101341 iter 90 value 81.799905 iter 100 value 81.698723 final value 81.698723 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.560829 iter 10 value 94.381980 iter 20 value 92.534974 iter 30 value 92.203404 iter 40 value 91.980223 iter 50 value 85.118500 iter 60 value 83.821022 iter 70 value 83.253460 iter 80 value 82.613333 iter 90 value 81.982987 iter 100 value 81.858424 final value 81.858424 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.423137 iter 10 value 94.624209 iter 20 value 94.296529 iter 30 value 86.481762 iter 40 value 85.013766 iter 50 value 84.597287 iter 60 value 84.279910 iter 70 value 83.341168 iter 80 value 82.414640 iter 90 value 81.902805 iter 100 value 81.804784 final value 81.804784 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 121.324976 iter 10 value 98.996960 iter 20 value 95.442110 iter 30 value 90.814652 iter 40 value 86.926284 iter 50 value 84.244980 iter 60 value 83.186930 iter 70 value 82.153522 iter 80 value 81.898611 iter 90 value 81.710262 iter 100 value 81.686632 final value 81.686632 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.521471 iter 10 value 95.505600 iter 20 value 94.049315 iter 30 value 86.750352 iter 40 value 84.942012 iter 50 value 83.969730 iter 60 value 83.006595 iter 70 value 82.860493 iter 80 value 82.526064 iter 90 value 82.139467 iter 100 value 81.946946 final value 81.946946 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.535529 iter 10 value 94.460985 iter 20 value 92.285835 iter 30 value 85.636096 iter 40 value 83.036272 iter 50 value 82.003912 iter 60 value 81.841775 iter 70 value 81.528024 iter 80 value 81.451551 iter 90 value 81.411206 iter 100 value 81.224806 final value 81.224806 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.397671 iter 10 value 94.689800 iter 20 value 94.466968 iter 30 value 88.816037 iter 40 value 86.774392 iter 50 value 85.839648 iter 60 value 84.236171 iter 70 value 83.358975 iter 80 value 82.467620 iter 90 value 82.151487 iter 100 value 82.008488 final value 82.008488 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.383354 iter 10 value 91.177158 iter 20 value 90.326240 iter 30 value 88.850351 iter 40 value 85.672085 iter 50 value 83.682443 iter 60 value 83.095403 iter 70 value 82.845254 iter 80 value 82.497882 iter 90 value 81.943376 iter 100 value 81.794685 final value 81.794685 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.231771 iter 10 value 94.457959 iter 20 value 88.400550 iter 30 value 88.393285 iter 40 value 88.392972 iter 50 value 86.463475 iter 60 value 86.456962 final value 86.454847 converged Fitting Repeat 2 # weights: 103 initial value 97.871288 final value 94.485556 converged Fitting Repeat 3 # weights: 103 initial value 94.136391 iter 10 value 93.807606 final value 93.796924 converged Fitting Repeat 4 # weights: 103 initial value 95.837337 final value 94.485779 converged Fitting Repeat 5 # weights: 103 initial value 111.417854 final value 94.485862 converged Fitting Repeat 1 # weights: 305 initial value 125.352951 iter 10 value 94.034291 iter 20 value 94.030715 iter 30 value 93.928434 iter 40 value 93.799794 iter 50 value 93.797458 iter 60 value 93.764729 iter 70 value 86.349941 iter 80 value 83.776879 iter 90 value 83.564469 iter 100 value 83.558677 final value 83.558677 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.069531 iter 10 value 94.448107 iter 20 value 93.771822 iter 30 value 92.885598 iter 40 value 92.877716 iter 50 value 90.321984 iter 60 value 90.305548 iter 70 value 90.304729 iter 80 value 88.543916 iter 90 value 83.303433 iter 100 value 81.670984 final value 81.670984 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.354179 iter 10 value 94.488650 iter 20 value 94.034084 final value 94.026689 converged Fitting Repeat 4 # weights: 305 initial value 99.934597 iter 10 value 91.405972 iter 20 value 89.392672 iter 30 value 89.368515 iter 40 value 89.356646 iter 50 value 87.228788 iter 60 value 87.218663 final value 87.218449 converged Fitting Repeat 5 # weights: 305 initial value 101.147600 iter 10 value 94.032052 iter 20 value 94.030775 iter 30 value 94.026898 final value 94.026772 converged Fitting Repeat 1 # weights: 507 initial value 109.432529 iter 10 value 94.493183 iter 20 value 94.484692 iter 30 value 93.944625 iter 40 value 85.879225 iter 50 value 85.202032 iter 60 value 83.972369 iter 70 value 83.083668 iter 80 value 81.284678 iter 90 value 80.790271 iter 100 value 80.458396 final value 80.458396 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.227084 iter 10 value 93.115450 iter 20 value 84.153451 iter 30 value 83.992823 iter 40 value 83.887880 iter 50 value 83.358443 iter 60 value 83.300125 iter 70 value 83.296163 iter 80 value 83.248983 iter 90 value 83.174902 iter 100 value 83.170008 final value 83.170008 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 123.717205 iter 10 value 94.492271 iter 20 value 94.484250 iter 30 value 94.385818 iter 40 value 93.802746 iter 50 value 93.753132 final value 93.752998 converged Fitting Repeat 4 # weights: 507 initial value 96.672214 iter 10 value 94.485788 iter 20 value 93.855790 iter 30 value 87.256981 iter 40 value 85.550102 iter 50 value 85.450799 iter 60 value 85.450007 iter 70 value 85.265051 iter 80 value 85.182147 iter 90 value 83.607403 iter 100 value 82.616041 final value 82.616041 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.731482 iter 10 value 94.492263 iter 20 value 94.471502 iter 30 value 86.863125 iter 40 value 86.452590 iter 50 value 86.399904 iter 60 value 86.393220 final value 86.393212 converged Fitting Repeat 1 # weights: 103 initial value 99.333372 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 96.501364 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 101.146658 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 99.704391 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 112.488096 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 96.742704 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 98.937142 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 102.129533 iter 10 value 94.008705 final value 94.008696 converged Fitting Repeat 4 # weights: 305 initial value 109.696324 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 102.214417 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 128.701397 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 100.765374 iter 10 value 92.723927 final value 92.723810 converged Fitting Repeat 3 # weights: 507 initial value 111.094614 iter 10 value 94.053115 final value 94.052911 converged Fitting Repeat 4 # weights: 507 initial value 111.076550 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 113.543208 final value 94.008696 converged Fitting Repeat 1 # weights: 103 initial value 101.508238 iter 10 value 94.078615 final value 94.056802 converged Fitting Repeat 2 # weights: 103 initial value 115.341746 iter 10 value 93.985226 iter 20 value 93.198871 iter 30 value 92.457461 iter 40 value 83.213283 iter 50 value 82.785410 iter 60 value 82.471570 iter 70 value 82.445277 iter 80 value 82.357081 iter 90 value 82.285416 final value 82.284861 converged Fitting Repeat 3 # weights: 103 initial value 103.539538 iter 10 value 92.230129 iter 20 value 87.913874 iter 30 value 85.405050 iter 40 value 84.779723 iter 50 value 84.612844 iter 60 value 84.229514 iter 70 value 84.122855 iter 80 value 83.898429 iter 90 value 82.289654 iter 100 value 82.167967 final value 82.167967 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 104.267143 iter 10 value 92.968545 iter 20 value 85.796859 iter 30 value 84.729435 iter 40 value 84.411680 iter 50 value 82.532801 iter 60 value 82.320560 iter 70 value 82.246145 iter 80 value 82.164819 final value 82.159659 converged Fitting Repeat 5 # weights: 103 initial value 103.260403 iter 10 value 94.956478 iter 20 value 94.054202 iter 30 value 87.816133 iter 40 value 83.680557 iter 50 value 83.125058 iter 60 value 82.570380 iter 70 value 82.300706 iter 80 value 82.176555 iter 90 value 82.159664 final value 82.159659 converged Fitting Repeat 1 # weights: 305 initial value 104.099228 iter 10 value 92.656083 iter 20 value 84.460848 iter 30 value 83.889649 iter 40 value 82.627409 iter 50 value 82.006754 iter 60 value 81.279860 iter 70 value 79.967442 iter 80 value 79.696040 iter 90 value 79.638647 iter 100 value 79.598294 final value 79.598294 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.873702 iter 10 value 93.646127 iter 20 value 91.209482 iter 30 value 88.132225 iter 40 value 86.256392 iter 50 value 82.345568 iter 60 value 81.555113 iter 70 value 80.811821 iter 80 value 79.720383 iter 90 value 79.527489 iter 100 value 79.483526 final value 79.483526 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 98.716255 iter 10 value 93.978174 iter 20 value 93.618179 iter 30 value 92.340183 iter 40 value 85.234742 iter 50 value 82.966739 iter 60 value 82.456149 iter 70 value 82.100308 iter 80 value 82.062546 iter 90 value 81.851205 iter 100 value 81.076251 final value 81.076251 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 116.659090 iter 10 value 95.305927 iter 20 value 91.640605 iter 30 value 88.316082 iter 40 value 85.993971 iter 50 value 83.143147 iter 60 value 81.949557 iter 70 value 81.154309 iter 80 value 80.849567 iter 90 value 80.106123 iter 100 value 79.814072 final value 79.814072 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.782219 iter 10 value 94.148508 iter 20 value 93.433934 iter 30 value 88.277066 iter 40 value 83.475607 iter 50 value 82.363522 iter 60 value 81.909852 iter 70 value 81.709032 iter 80 value 81.677845 iter 90 value 81.634147 iter 100 value 81.258860 final value 81.258860 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 149.176956 iter 10 value 98.447962 iter 20 value 95.539807 iter 30 value 89.450634 iter 40 value 87.204725 iter 50 value 86.820227 iter 60 value 84.983493 iter 70 value 83.076020 iter 80 value 81.598007 iter 90 value 81.279873 iter 100 value 80.901359 final value 80.901359 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.797386 iter 10 value 93.957830 iter 20 value 85.731228 iter 30 value 85.268646 iter 40 value 84.089102 iter 50 value 81.249370 iter 60 value 80.076410 iter 70 value 79.810810 iter 80 value 79.731910 iter 90 value 79.662568 iter 100 value 79.584454 final value 79.584454 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 121.270260 iter 10 value 93.864687 iter 20 value 91.775524 iter 30 value 87.183170 iter 40 value 84.656273 iter 50 value 84.290142 iter 60 value 82.524339 iter 70 value 82.244724 iter 80 value 81.656230 iter 90 value 81.281610 iter 100 value 81.143068 final value 81.143068 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.474711 iter 10 value 94.328313 iter 20 value 93.670570 iter 30 value 93.617599 iter 40 value 91.881338 iter 50 value 84.166972 iter 60 value 82.800957 iter 70 value 81.211164 iter 80 value 80.226994 iter 90 value 79.828806 iter 100 value 79.507450 final value 79.507450 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 115.857898 iter 10 value 93.799170 iter 20 value 86.999346 iter 30 value 84.235599 iter 40 value 84.046281 iter 50 value 82.725467 iter 60 value 81.377769 iter 70 value 80.526017 iter 80 value 79.587127 iter 90 value 79.316224 iter 100 value 79.264187 final value 79.264187 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.991717 iter 10 value 94.054737 iter 20 value 94.052929 final value 94.052918 converged Fitting Repeat 2 # weights: 103 initial value 107.511411 iter 10 value 94.054556 iter 20 value 94.052978 final value 94.052915 converged Fitting Repeat 3 # weights: 103 initial value 97.143047 iter 10 value 94.045305 final value 94.044809 converged Fitting Repeat 4 # weights: 103 initial value 94.282098 final value 94.054500 converged Fitting Repeat 5 # weights: 103 initial value 107.609030 final value 94.054426 converged Fitting Repeat 1 # weights: 305 initial value 98.357909 iter 10 value 94.056523 final value 94.052929 converged Fitting Repeat 2 # weights: 305 initial value 98.457694 iter 10 value 93.609677 iter 20 value 93.605185 final value 93.604854 converged Fitting Repeat 3 # weights: 305 initial value 97.984010 iter 10 value 93.583523 iter 20 value 93.579140 iter 30 value 93.558960 iter 40 value 93.500969 iter 50 value 85.689985 iter 60 value 83.469238 final value 83.469237 converged Fitting Repeat 4 # weights: 305 initial value 116.643497 iter 10 value 94.057810 iter 20 value 94.052989 iter 30 value 94.007190 iter 40 value 93.579629 iter 50 value 93.578952 final value 93.578948 converged Fitting Repeat 5 # weights: 305 initial value 106.398756 iter 10 value 94.057382 iter 20 value 92.525445 iter 30 value 86.475810 iter 40 value 86.469285 iter 50 value 86.469116 iter 60 value 86.468424 iter 70 value 85.753285 iter 80 value 82.760504 iter 90 value 82.630717 iter 100 value 82.344748 final value 82.344748 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 95.716808 iter 10 value 83.833145 iter 20 value 83.819432 iter 30 value 83.525067 iter 40 value 83.482541 iter 50 value 83.077962 iter 60 value 81.430598 iter 70 value 80.371565 iter 80 value 80.092353 final value 80.092002 converged Fitting Repeat 2 # weights: 507 initial value 109.754436 iter 10 value 94.017280 iter 20 value 94.009101 final value 94.008892 converged Fitting Repeat 3 # weights: 507 initial value 113.715379 iter 10 value 85.103408 iter 20 value 82.812278 iter 30 value 82.811567 iter 40 value 82.805623 iter 50 value 82.805498 final value 82.804505 converged Fitting Repeat 4 # weights: 507 initial value 97.768326 iter 10 value 94.016869 iter 20 value 93.505558 iter 30 value 87.969178 iter 40 value 87.930131 iter 50 value 87.929296 iter 60 value 84.559022 iter 70 value 81.967570 iter 80 value 79.524208 iter 90 value 79.131004 iter 100 value 79.128432 final value 79.128432 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.012291 iter 10 value 94.016896 iter 20 value 94.009793 iter 30 value 91.246860 iter 40 value 85.653985 iter 50 value 83.882000 iter 60 value 83.366536 iter 70 value 80.705588 iter 80 value 80.024472 iter 90 value 79.933742 final value 79.933426 converged Fitting Repeat 1 # weights: 103 initial value 111.935885 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 102.309877 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 107.841181 iter 10 value 94.303447 final value 94.289216 converged Fitting Repeat 4 # weights: 103 initial value 101.094744 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 98.077717 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.428824 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 94.816882 final value 94.484215 converged Fitting Repeat 3 # weights: 305 initial value 102.556845 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 95.350166 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 114.261625 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 113.901022 iter 10 value 94.484211 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 103.953996 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 95.687017 iter 10 value 93.330739 iter 20 value 90.434047 iter 30 value 87.486114 iter 40 value 87.481202 final value 87.481074 converged Fitting Repeat 4 # weights: 507 initial value 108.961745 final value 93.701657 converged Fitting Repeat 5 # weights: 507 initial value 103.044175 final value 94.428839 converged Fitting Repeat 1 # weights: 103 initial value 99.599943 iter 10 value 93.342808 iter 20 value 88.305532 iter 30 value 88.117862 iter 40 value 85.198689 iter 50 value 84.781833 iter 60 value 84.693653 iter 70 value 83.804579 iter 80 value 83.546096 iter 90 value 83.339191 iter 100 value 83.257597 final value 83.257597 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 98.783727 iter 10 value 94.383360 iter 20 value 94.381924 iter 30 value 91.099134 iter 40 value 88.334596 iter 50 value 87.093627 iter 60 value 86.817948 iter 70 value 85.959575 iter 80 value 84.869704 iter 90 value 83.578815 iter 100 value 83.265243 final value 83.265243 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 99.617978 iter 10 value 94.463150 iter 20 value 92.833262 iter 30 value 91.431064 iter 40 value 91.229446 iter 50 value 91.097267 iter 60 value 91.090474 final value 91.090431 converged Fitting Repeat 4 # weights: 103 initial value 102.435973 iter 10 value 94.486687 iter 20 value 94.220196 iter 30 value 94.118855 iter 40 value 94.115020 iter 50 value 94.113766 iter 60 value 94.113001 final value 94.112594 converged Fitting Repeat 5 # weights: 103 initial value 107.714481 iter 10 value 94.488526 iter 20 value 94.251698 iter 30 value 92.359770 iter 40 value 88.831909 iter 50 value 86.622062 iter 60 value 85.287745 iter 70 value 83.286047 iter 80 value 81.904601 iter 90 value 81.590552 iter 100 value 81.490499 final value 81.490499 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 101.646181 iter 10 value 94.488412 iter 20 value 94.417275 iter 30 value 87.811700 iter 40 value 86.204553 iter 50 value 82.882463 iter 60 value 82.425156 iter 70 value 81.878600 iter 80 value 81.283531 iter 90 value 81.095175 iter 100 value 80.984316 final value 80.984316 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.798683 iter 10 value 94.715956 iter 20 value 91.225973 iter 30 value 86.857566 iter 40 value 84.579297 iter 50 value 83.368694 iter 60 value 83.284547 iter 70 value 83.065659 iter 80 value 82.992200 iter 90 value 82.337154 iter 100 value 81.755942 final value 81.755942 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.322094 iter 10 value 93.718915 iter 20 value 84.279247 iter 30 value 83.783613 iter 40 value 83.561823 iter 50 value 83.288483 iter 60 value 83.070183 iter 70 value 82.505880 iter 80 value 81.195304 iter 90 value 80.661961 iter 100 value 80.282491 final value 80.282491 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.598948 iter 10 value 94.374155 iter 20 value 88.179329 iter 30 value 84.374071 iter 40 value 83.728660 iter 50 value 82.622421 iter 60 value 82.427919 iter 70 value 82.276809 iter 80 value 82.265539 iter 90 value 82.261771 iter 100 value 82.236450 final value 82.236450 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 106.316903 iter 10 value 95.113519 iter 20 value 91.197065 iter 30 value 87.530678 iter 40 value 87.008493 iter 50 value 86.893929 iter 60 value 83.834816 iter 70 value 83.549096 iter 80 value 83.380629 iter 90 value 83.353183 iter 100 value 83.218847 final value 83.218847 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 135.232859 iter 10 value 94.417464 iter 20 value 89.972793 iter 30 value 87.075771 iter 40 value 85.177212 iter 50 value 81.062398 iter 60 value 80.717366 iter 70 value 80.190316 iter 80 value 80.101815 iter 90 value 79.894228 iter 100 value 79.843882 final value 79.843882 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 159.369325 iter 10 value 95.578432 iter 20 value 94.492970 iter 30 value 94.187569 iter 40 value 89.051065 iter 50 value 86.488435 iter 60 value 85.040211 iter 70 value 84.317184 iter 80 value 81.085467 iter 90 value 80.023541 iter 100 value 79.687884 final value 79.687884 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 120.994439 iter 10 value 94.645195 iter 20 value 86.205179 iter 30 value 84.979059 iter 40 value 84.775387 iter 50 value 84.518643 iter 60 value 83.550711 iter 70 value 82.992341 iter 80 value 81.626722 iter 90 value 81.342540 iter 100 value 80.901476 final value 80.901476 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 113.153812 iter 10 value 94.442326 iter 20 value 91.822982 iter 30 value 88.350518 iter 40 value 84.914888 iter 50 value 82.597940 iter 60 value 81.819231 iter 70 value 81.594369 iter 80 value 80.355220 iter 90 value 80.088622 iter 100 value 79.939788 final value 79.939788 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 108.718383 iter 10 value 93.239139 iter 20 value 87.273012 iter 30 value 83.736370 iter 40 value 82.376418 iter 50 value 80.442906 iter 60 value 79.746582 iter 70 value 79.331349 iter 80 value 79.232942 iter 90 value 79.125617 iter 100 value 79.048415 final value 79.048415 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.717389 iter 10 value 94.485992 iter 20 value 94.398199 iter 30 value 94.074091 final value 94.066899 converged Fitting Repeat 2 # weights: 103 initial value 101.809802 final value 94.486093 converged Fitting Repeat 3 # weights: 103 initial value 105.707610 final value 94.485762 converged Fitting Repeat 4 # weights: 103 initial value 101.615125 final value 94.485941 converged Fitting Repeat 5 # weights: 103 initial value 99.597346 iter 10 value 94.486223 final value 94.484228 converged Fitting Repeat 1 # weights: 305 initial value 97.158558 iter 10 value 94.358376 iter 20 value 94.338495 iter 30 value 87.679316 iter 40 value 81.744001 iter 50 value 81.438535 iter 60 value 81.166237 iter 70 value 81.131837 iter 80 value 81.008942 iter 90 value 80.980782 iter 100 value 80.979977 final value 80.979977 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.273675 iter 10 value 85.115265 iter 20 value 83.038862 iter 30 value 83.030890 iter 40 value 83.009065 iter 50 value 83.005500 iter 60 value 82.692549 iter 70 value 82.136785 iter 80 value 81.129565 iter 90 value 80.768280 iter 100 value 80.599709 final value 80.599709 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 106.396590 iter 10 value 94.359159 iter 20 value 94.357739 iter 20 value 94.357739 iter 20 value 94.357739 final value 94.357739 converged Fitting Repeat 4 # weights: 305 initial value 96.527961 iter 10 value 94.359366 iter 20 value 94.294468 iter 30 value 83.035425 iter 40 value 83.029259 iter 50 value 82.876400 iter 60 value 82.475638 iter 70 value 81.952281 iter 80 value 78.962608 iter 90 value 78.335234 iter 100 value 78.296924 final value 78.296924 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.301624 iter 10 value 94.488908 iter 20 value 94.484021 iter 30 value 94.112698 final value 94.112616 converged Fitting Repeat 1 # weights: 507 initial value 102.802412 iter 10 value 93.709508 iter 20 value 93.598627 iter 30 value 89.824597 iter 40 value 84.882170 iter 50 value 83.219291 iter 60 value 83.150833 iter 70 value 82.974259 iter 80 value 81.827299 final value 81.825518 converged Fitting Repeat 2 # weights: 507 initial value 96.646013 iter 10 value 94.491049 iter 20 value 88.781574 iter 30 value 86.316668 iter 40 value 86.300406 iter 50 value 86.300159 iter 60 value 86.297043 iter 70 value 86.115976 iter 80 value 85.700576 iter 90 value 82.454029 iter 100 value 81.789366 final value 81.789366 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 99.933008 iter 10 value 94.491183 iter 20 value 94.368435 iter 30 value 92.927196 iter 40 value 91.248632 iter 50 value 91.243074 iter 60 value 91.242650 iter 70 value 91.242017 iter 80 value 91.188147 iter 90 value 83.522604 iter 100 value 82.099974 final value 82.099974 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 98.293565 iter 10 value 94.492199 iter 20 value 94.484707 iter 30 value 94.258758 iter 40 value 85.260850 iter 50 value 85.040254 iter 60 value 85.040138 final value 85.039957 converged Fitting Repeat 5 # weights: 507 initial value 101.718478 iter 10 value 94.362565 iter 20 value 94.355803 iter 30 value 91.082883 iter 40 value 82.875989 iter 50 value 82.395838 iter 60 value 81.894931 iter 70 value 81.665077 iter 80 value 81.662746 final value 81.662719 converged Fitting Repeat 1 # weights: 103 initial value 101.570709 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 111.849431 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 94.341200 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 96.316258 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 100.420057 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 100.988470 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 97.220679 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 95.460491 iter 10 value 85.485890 iter 20 value 84.530857 iter 30 value 84.525372 final value 84.525346 converged Fitting Repeat 4 # weights: 305 initial value 94.232483 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 105.669874 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 119.284605 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 99.930317 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 101.619811 final value 94.038251 converged Fitting Repeat 4 # weights: 507 initial value 120.916155 iter 10 value 92.275879 iter 20 value 92.081194 iter 30 value 90.720627 final value 90.702385 converged Fitting Repeat 5 # weights: 507 initial value 102.140950 iter 10 value 93.757693 iter 20 value 92.731596 final value 92.731183 converged Fitting Repeat 1 # weights: 103 initial value 102.597640 iter 10 value 93.972191 iter 20 value 88.222441 iter 30 value 87.915976 iter 40 value 87.622547 iter 50 value 87.426651 iter 60 value 85.257013 iter 70 value 84.976407 iter 80 value 84.418978 iter 90 value 84.303865 iter 100 value 84.233663 final value 84.233663 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 110.627189 iter 10 value 93.954608 iter 20 value 87.569856 iter 30 value 85.613478 iter 40 value 84.631104 iter 50 value 83.543213 iter 60 value 82.868629 iter 70 value 82.780672 final value 82.780646 converged Fitting Repeat 3 # weights: 103 initial value 114.918455 iter 10 value 94.061710 iter 20 value 92.231322 iter 30 value 89.005077 iter 40 value 87.177877 iter 50 value 86.920837 iter 60 value 84.903619 iter 70 value 83.754125 iter 80 value 83.337892 iter 90 value 81.897413 iter 100 value 80.764694 final value 80.764694 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 100.850132 iter 10 value 94.056688 iter 20 value 93.629297 iter 30 value 89.062993 iter 40 value 87.410277 iter 50 value 84.243494 iter 60 value 83.635949 iter 70 value 83.614834 final value 83.614817 converged Fitting Repeat 5 # weights: 103 initial value 103.295478 iter 10 value 93.874104 iter 20 value 86.830013 iter 30 value 84.700173 iter 40 value 83.603278 iter 50 value 82.979537 iter 60 value 82.243797 iter 70 value 81.197095 iter 80 value 80.954675 final value 80.936416 converged Fitting Repeat 1 # weights: 305 initial value 106.889002 iter 10 value 94.025629 iter 20 value 93.580480 iter 30 value 89.387749 iter 40 value 85.232766 iter 50 value 83.828440 iter 60 value 82.340980 iter 70 value 81.412756 iter 80 value 80.760477 iter 90 value 80.278476 iter 100 value 79.400563 final value 79.400563 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.443714 iter 10 value 94.066251 iter 20 value 93.594197 iter 30 value 92.696528 iter 40 value 91.043359 iter 50 value 89.047809 iter 60 value 87.990455 iter 70 value 84.267488 iter 80 value 83.894220 iter 90 value 82.672460 iter 100 value 81.930602 final value 81.930602 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.357865 iter 10 value 94.072030 iter 20 value 92.940753 iter 30 value 88.005808 iter 40 value 86.923688 iter 50 value 85.495880 iter 60 value 83.434598 iter 70 value 81.206164 iter 80 value 80.716392 iter 90 value 80.230568 iter 100 value 79.944655 final value 79.944655 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.728339 iter 10 value 94.142030 iter 20 value 88.251670 iter 30 value 86.237243 iter 40 value 84.978040 iter 50 value 81.965390 iter 60 value 80.320959 iter 70 value 79.423199 iter 80 value 79.171252 iter 90 value 79.130518 final value 79.123916 converged Fitting Repeat 5 # weights: 305 initial value 104.687132 iter 10 value 93.986093 iter 20 value 90.625377 iter 30 value 85.924587 iter 40 value 85.478896 iter 50 value 83.158576 iter 60 value 82.227263 iter 70 value 81.465258 iter 80 value 81.426422 iter 90 value 80.998742 iter 100 value 80.168264 final value 80.168264 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 110.517083 iter 10 value 97.200703 iter 20 value 91.882748 iter 30 value 90.182973 iter 40 value 87.856193 iter 50 value 84.846558 iter 60 value 81.709596 iter 70 value 81.159282 iter 80 value 79.847479 iter 90 value 79.557780 iter 100 value 79.414511 final value 79.414511 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 114.638422 iter 10 value 93.983613 iter 20 value 90.770458 iter 30 value 85.936695 iter 40 value 84.693381 iter 50 value 82.123230 iter 60 value 80.138743 iter 70 value 79.802458 iter 80 value 79.579991 iter 90 value 79.515268 iter 100 value 79.490371 final value 79.490371 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 117.732720 iter 10 value 94.060656 iter 20 value 86.876671 iter 30 value 85.586390 iter 40 value 85.028906 iter 50 value 82.695851 iter 60 value 81.481568 iter 70 value 81.175748 iter 80 value 79.778550 iter 90 value 79.410161 iter 100 value 79.263931 final value 79.263931 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.987245 iter 10 value 93.382668 iter 20 value 86.790292 iter 30 value 85.089131 iter 40 value 83.948878 iter 50 value 81.402658 iter 60 value 80.731753 iter 70 value 80.325301 iter 80 value 79.845135 iter 90 value 79.196406 iter 100 value 79.089035 final value 79.089035 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.033508 iter 10 value 93.753163 iter 20 value 87.390679 iter 30 value 83.162490 iter 40 value 81.495354 iter 50 value 80.657503 iter 60 value 80.344314 iter 70 value 79.813758 iter 80 value 79.566450 iter 90 value 79.464629 iter 100 value 79.445187 final value 79.445187 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.888670 final value 94.054515 converged Fitting Repeat 2 # weights: 103 initial value 105.609212 iter 10 value 94.054678 iter 20 value 94.012945 iter 30 value 88.178620 iter 40 value 83.080164 iter 50 value 83.045701 iter 60 value 83.044616 iter 70 value 83.044216 iter 80 value 83.041709 iter 90 value 83.035208 iter 100 value 82.505654 final value 82.505654 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.726794 final value 94.054560 converged Fitting Repeat 4 # weights: 103 initial value 104.861752 final value 94.054435 converged Fitting Repeat 5 # weights: 103 initial value 102.751080 final value 94.054418 converged Fitting Repeat 1 # weights: 305 initial value 104.801526 iter 10 value 94.057734 iter 20 value 93.940509 iter 30 value 90.400769 iter 40 value 86.797336 iter 50 value 86.557345 final value 86.544295 converged Fitting Repeat 2 # weights: 305 initial value 105.235462 iter 10 value 94.057235 iter 20 value 94.051230 iter 30 value 91.074273 iter 40 value 90.863194 iter 50 value 90.859450 iter 60 value 90.858553 final value 90.858268 converged Fitting Repeat 3 # weights: 305 initial value 99.838181 iter 10 value 94.057842 iter 20 value 94.052995 iter 30 value 93.204763 iter 40 value 92.097714 final value 92.096239 converged Fitting Repeat 4 # weights: 305 initial value 98.189012 iter 10 value 94.057810 iter 20 value 89.129131 iter 30 value 85.275836 iter 40 value 85.113023 final value 85.112213 converged Fitting Repeat 5 # weights: 305 initial value 94.742187 iter 10 value 94.056964 iter 20 value 93.829151 iter 30 value 89.867846 iter 40 value 89.865701 iter 50 value 89.865181 iter 60 value 89.862411 iter 70 value 89.861827 iter 80 value 89.450758 iter 90 value 89.070113 final value 89.069977 converged Fitting Repeat 1 # weights: 507 initial value 96.470825 iter 10 value 94.059538 iter 20 value 93.859821 iter 30 value 84.736348 iter 40 value 84.488821 final value 84.488629 converged Fitting Repeat 2 # weights: 507 initial value 115.266921 iter 10 value 94.046656 iter 20 value 93.879606 iter 30 value 91.540317 iter 40 value 91.488330 iter 50 value 91.487669 iter 60 value 91.485434 iter 70 value 91.370471 iter 80 value 91.369348 iter 90 value 91.366372 iter 100 value 91.365423 final value 91.365423 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.019878 iter 10 value 94.047067 iter 20 value 94.041433 final value 94.039476 converged Fitting Repeat 4 # weights: 507 initial value 103.015007 iter 10 value 94.060418 iter 20 value 94.038425 iter 30 value 87.757084 iter 40 value 87.345508 iter 50 value 87.335847 final value 87.335417 converged Fitting Repeat 5 # weights: 507 initial value 113.060891 iter 10 value 94.060454 iter 20 value 94.053017 iter 30 value 88.537254 iter 40 value 84.976858 iter 50 value 84.972472 iter 60 value 84.963097 iter 70 value 84.817914 iter 80 value 84.106695 iter 90 value 79.430830 iter 100 value 78.851025 final value 78.851025 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 133.677397 iter 10 value 117.763515 iter 20 value 117.611564 iter 30 value 107.250782 iter 40 value 106.847975 iter 50 value 106.062245 iter 60 value 106.046572 iter 70 value 105.939893 final value 105.932151 converged Fitting Repeat 2 # weights: 305 initial value 123.940004 iter 10 value 117.871262 iter 20 value 117.648347 iter 30 value 106.415687 iter 40 value 104.505251 iter 50 value 104.453188 iter 60 value 104.452194 final value 104.452024 converged Fitting Repeat 3 # weights: 305 initial value 123.990299 iter 10 value 117.211103 iter 20 value 115.437301 iter 30 value 105.647370 iter 40 value 103.805461 iter 50 value 102.446684 iter 60 value 102.423421 iter 70 value 102.422836 iter 80 value 102.420938 iter 90 value 102.402334 iter 100 value 101.882878 final value 101.882878 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 122.030847 iter 10 value 117.894735 iter 20 value 113.041407 iter 30 value 108.777831 final value 107.004015 converged Fitting Repeat 5 # weights: 305 initial value 132.354035 iter 10 value 117.853587 iter 20 value 117.849145 iter 30 value 117.549878 iter 40 value 117.549825 iter 40 value 117.549825 final value 117.549825 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Fri Mar 14 07:12:18 2025 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 51.816 1.082 129.277
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 33.976 | 0.251 | 34.292 | |
FreqInteractors | 0.290 | 0.008 | 0.298 | |
calculateAAC | 0.042 | 0.004 | 0.047 | |
calculateAutocor | 0.641 | 0.020 | 0.663 | |
calculateCTDC | 0.089 | 0.000 | 0.089 | |
calculateCTDD | 0.733 | 0.000 | 0.734 | |
calculateCTDT | 0.244 | 0.004 | 0.248 | |
calculateCTriad | 0.439 | 0.000 | 0.439 | |
calculateDC | 0.123 | 0.000 | 0.123 | |
calculateF | 0.422 | 0.004 | 0.427 | |
calculateKSAAP | 0.127 | 0.004 | 0.132 | |
calculateQD_Sm | 2.311 | 0.012 | 2.328 | |
calculateTC | 2.240 | 0.024 | 2.269 | |
calculateTC_Sm | 0.336 | 0.000 | 0.337 | |
corr_plot | 34.820 | 0.164 | 35.043 | |
enrichfindP | 0.515 | 0.024 | 23.024 | |
enrichfind_hp | 0.073 | 0.008 | 1.506 | |
enrichplot | 0.487 | 0.040 | 0.528 | |
filter_missing_values | 0.002 | 0.000 | 0.002 | |
getFASTA | 0.128 | 0.007 | 5.812 | |
getHPI | 0.000 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.002 | 0.000 | 0.002 | |
plotPPI | 0.083 | 0.008 | 0.091 | |
pred_ensembel | 17.756 | 0.791 | 17.420 | |
var_imp | 35.299 | 0.304 | 35.755 | |