Mustafa Erhan Ozer
| Snapshot Date: 2025-02-03 13:00 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-06 12:11 -0500 (Thu, 06 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4753 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4501 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4524 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4476 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | NA | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-02-05 12:16:52 -0500 (Wed, 05 Feb 2025) |
| EndedAt: 2025-02-05 12:23:28 -0500 (Wed, 05 Feb 2025) |
| EllapsedTime: 396.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6649,9575,2787,4886,11232,358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,4126,6182,2702,1468,83548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,6714,55902,9056,1678,4705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1950,3929,85365,506,4286,79585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55670,85446,79776,5595,728,3630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81033,116931,22820,308,9560,54575
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 940,3382,9919,653,79587,8879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79133,479,4724,51204,585,229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,5239,2740,150379,374291,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4828,111240474,3383,1027,1956,6833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10842,1356,3948,10316,26291,1634
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2235,3692,3117,29960,3945,26762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 492,26119,4233,685,2064,7351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3417,200539,1339,653509,3988,37
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10059,219,10383,2538,4160,116228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,26354,6476,10938,5970,283459
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,10116,52,57017,498,2908
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10857,23369,23054,10875,5579,2689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1815,285126,6715,3483,10537,5826
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4149,60,471,51300,5239,3479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9997,867,9945,7030,6338,5787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8660,2678,2786,84274,84572,6505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 140803,79944,5139,4854,1629,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7388,593,4714,5295,2243,11131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3098,6714,4695,2328,2063,3783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 340024,8471,8945,83693,387787,6938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2643,162417,5499,4803,9095,51300
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,570,9945,51660,488,149461
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1672,4126,175,1769,5019,26762
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2890,4982,79053,718,642489,4925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9759,1646,37,9370,2834,2710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5291,10911,1629,51099,1327,4705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7276,6324,26503,330,4728,54902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1277,4899,55034,107075310,15,5972
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 155,4012,2063,2690,64689,10013
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1376,2584,10965,1234,1634,6649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7351,1802,5443,596,100128525,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,125170,23411,285,283459,6714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1524,2184,51660,2548,1672,3953
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5744,5592,7099,22845,4779,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,1608,6772,23175,339,4852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10221,6513,1234,23062,7132,2875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9997,6898,10753,50814,9429,407024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10999,1802,5465,1027,819,51081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2712,2653,3939,1186,406922,388962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84062,1890,29947,2170,291,3480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203859,55005,57511,4069,6868,9374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4726,81033,3939,1401,1910,8675
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,4700,4351,1348,80270,29926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2108,5447,55526,150,1340,387082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1435,137682,3034,3992,22868,1645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,130120,51608,3813,80201,3954
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7056,55937,4669,4728,84889,341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,5828,3784,85569,54600,3934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,2919,3700,3795,3065,85476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 642489,9698,285,10999,2169,3486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4688,718,10559,64432,7319,5293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5288,2305,48,90865,9388,929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3290,406982,7030,9498,6748,729230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80267,255231,10316,2944,2689,51144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57620,51660,1490,189,3240,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6929,3030,2642,6772,1992,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,3606,114548,5139,6934,10423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6938,7384,5327,406,1327,137682
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,2998,3141,3673,629,7391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2739,1956,708,3783,6401,1203
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56938,6720,4925,51128,51099,5744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 122961,406947,1890,162417,30061,2538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,4729,3482,51181,3081,8648
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,942,9365,340024,4758,8604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 275,2247,7916,4855,7528,166785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5445,2395,27344,6908,1589,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1490,2314,55644,6584,89874,4709
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51128,3339,7471,3586,846,162417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4968,284958,22868,7248,1557,5498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,56999,8462,3988,4015,2799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152078,3417,84947,3284,388962,4790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6401,27089,6556,6579,1843,7347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 283459,5723,10686,10875,6748,27089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,487,5950,51083,4159,2647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28957,5009,26235,9607,6891,181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406937,4843,1678,284958,2835,4968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 158,4709,10316,2717,7388,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,4729,6775,4137,3795,7220
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2683,51021,6356,25839,23369,2944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10062,2710,2030,54902,929,54600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,490,219,4049,3356,83884
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4758,4878,4982,4973,27089,2688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3773,79644,4899,8675,181,8243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,9388,5167,1493,2571,3712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 364,5078,7941,3081,81033,5925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,5243,200205,4313,1351,9021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,1371,101180976,80347,540,56923
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,79783,3929,84340,2587,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3570,388585,6522,177,133,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51052,2161,795,2314,3673,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,7038,2713,7319,152078,4968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3291,4714,79731,85446,4712,25915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,9429,3551,3060,3596,590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4851,84275,149461,2516,54344,2688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 836,1813,8854,91574,5836,221458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83548,7515,11222,4842,51083,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54575,1728,63892,4976,29928,4137
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,4627,3087,177,2787,79572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2053,56945,10423,3551,3156,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,4313,493,2244,1392,7292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5563,4357,4843,134,8879,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148738,79796,353,7428,367,2588
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4719,3283,2110,7276,55572,790955
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3460,87178,7040,1734,54476,6338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6329,1956,55283,410,5315,54915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 154,5723,56652,1028,219,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23417,81704,7381,2710,2792,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 384,627,9672,5588,407010,1499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407004,3606,4988,10682,29960,118
--> return NULL...
2025-02-05 12:23:18.028 R[39177:191009923] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
125.833 1.404 128.429
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.990 | 0.049 | 1.542 | |