Mustafa Erhan Ozer
| Snapshot Date: 2025-02-03 13:00 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-06 12:09 -0500 (Thu, 06 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4753 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4501 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4524 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4476 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | NA | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-02-04 11:02:37 -0500 (Tue, 04 Feb 2025) |
| EndedAt: 2025-02-04 11:12:25 -0500 (Tue, 04 Feb 2025) |
| EllapsedTime: 588.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1890,7252,718,60684,5365,5967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,5631,2166,1608,100128525,4256
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,6522,8560,107075310,138050,2309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1813,7471,4803,10165,5447,92483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,8567,2542,405,1201,5925
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,1608,4543,56729,6199,7292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4976,3162,65080,5053,4719,9759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1843,3990,2597,6716,3101,344905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 572,3728,55572,4779,7019,4719
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54552,5161,170302,55340,3598,3636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,10059,5836,940,2713,846
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3162,10724,8802,79661,54600,196385
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,6770,5365,2638,23411,79053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3489,7057,6999,4828,3708,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2949,55818,6788,6770,22797,3240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3458,3240,941,8854,54901,4860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1636,4654,3480,4803,27125,5331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2155,1401,83985,3483,125988,55768
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3156,152926,3663,161247,51085,51094
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5274,4967,55788,348,5836,5276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5367,406906,29929,2639,6566,265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7386,28234,26354,3945,84274,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2688,285,7422,2115,51,11231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2170,6718,2539,23516,125988,2548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2629,350,107075310,54805,9332,1543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 161247,149461,5971,1442,89866,3373
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3172,1346,347411,80224,4286,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1339,388753,2683,6403,51117,596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64805,6571,3060,9672,10616,10221
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 24147,9526,100,2559,3558,644096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79158,51079,5660,10891,185,7515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,7494,4790,10000,28951,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10165,63931,7172,958,2572,4547
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,55024,7297,55967,9241,1992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3170,4311,1583,57817,79644,6445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,2310,551,5214,5787,9779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9572,2689,4886,85446,9076,1634
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,4337,54539,56052,4942,5970
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389,706,5467,2052,3099,7480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,8471,3875,5373,1581,801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7297,8642,7428,7879,5792,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8714,7100,9919,383,7040,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,8802,6929,407021,3416,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131669,2689,2591,3779,4842,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51601,4282,84705,3033,55532,10316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79934,4982,10874,23163,5406,2904
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7040,124976,29947,100506742,5139,54567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55699,4318,55768,6715,64131,10269
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56923,3990,8877,1813,253943,8567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 583,10379,540,2157,2516,10243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6514,9607,64432,27249,10116,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,22797,83548,285126,3172,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51094,4035,1581,9420,51604,8604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8772,3630,55902,4358,627,154
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4502,886,84239,1493,4153,51099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,432369,3054,5191,265,4720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5713,4851,6927,2266,18,9507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,56922,768239,51117,2932,3304
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2115,26060,407040,8600,84300,54896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6774,4149,25828,120227,29078,80331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2591,81570,2538,3373,6938,8243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,5730,2638,55343,3569,4609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,5971,131669,90624,6183,203
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54577,3899,57570,4718,26003,537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1585,3663,6775,5321,2100,3990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,10724,51660,5211,4899,5781
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11136,55818,3939,54982,79585,91452
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1355,2745,54549,388585,207,6390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56997,6341,388743,6564,170302,3600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54931,23417,181,64900,5184,89874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,463,80070,6576,6352,5080
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,5967,582,83985,9054,23409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6261,200205,5192,2739,10019,60
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7841,79796,10667,203859,581,10019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2864,3416,11255,3692,100,3113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2695,131118,389,64900,2146,6263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7389,344905,7320,3783,126328,7295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55699,57104,10059,5257,161247,10008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4899,5176,8714,7515,2946,5228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7325,25821,8877,2194,563,9076
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 38,9968,29947,654,1499,3636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,335,123283,6571,10243,9672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26762,91647,10062,5836,50484,91452
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23400,2690,64919,2934,1644,10686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55486,4012,9560,2793,4889,7225
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2303,5617,7385,64116,7076,265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,10841,7056,55278,54802,10221
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3598,10094,1244,793,54331,5601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2712,5189,7276,388962,5214,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1757,84572,2950,2875,26235,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1056,1649,2200,1537,81689,54331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7248,22852,476,1649,6009,1636
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,79661,1392,1621,3991,4656
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3284,3155,1392,2908,80270,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3717,5255,63892,6788,9429,256471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3596,5581,83548,89874,26175,84274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2335,208,111240474,4256,7284,25828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,407007,1585,3030,2740,27329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 316,4306,338821,84342,51116,4000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,4729,8942,2184,5728,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6199,350,3423,80270,5792,10857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2581,1514,255231,2118,23163,4720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23274,3480,407021,642489,498,8604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 583,6263,4543,462,3030,5741
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,7345,5581,7048,64689,5971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54106,2592,7078,51555,101180976,6556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2904,54675,10842,3784,56652,8560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10466,2115,23753,2548,10379,80222
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3552,2786,115286,407040,407004,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2243,2235,940,2395,185,2113
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2990,6522,7097,1281,4035,3481
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2152,2653,1409,27010,84701,2944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23556,4357,138050,325,79087,4282
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29880,6198,100130015,25839,384,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3700,2745,84947,801,4312,3988
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
106.281 2.117 110.930
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.365 | 0.072 | 1.921 | |