Mustafa Erhan Ozer
| Snapshot Date: 2025-02-03 13:00 -0500 (Mon, 03 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-02-06 12:12 -0500 (Thu, 06 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4753 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4501 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4524 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4476 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4407 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | NA | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-02-04 11:33:45 -0000 (Tue, 04 Feb 2025) |
| EndedAt: 2025-02-04 11:39:24 -0000 (Tue, 04 Feb 2025) |
| EllapsedTime: 338.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 12.3.1 (openEuler 12.3.1-36.oe2403)
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.2/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 4973,4723,6387,100128525,57761,6517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 268,7919,53905,5836,2244,3141
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152926,1361,6721,54802,10221,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56999,79001,5625,9927,2998,335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5830,29968,7018,3992,2517,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26119,4729,3992,3416,5053,7494
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1557,5919,5373,1769,5276,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 101180976,51128,3358,2006,2787,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5563,8431,3557,6329,6492,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133522,51004,55331,28234,2697,148738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5744,6445,6927,2804,2645,56302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54331,153,2695,406906,5265,1394
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5161,51092,6401,51293,3598,5096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,2710,81033,28958,2034,6329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2903,4720,5901,54549,6609,8665
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5447,7052,5369,2100,64805,1072
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 729238,81033,123283,15,1582,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,114814,2793,2878,291,51181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4552,7248,29078,3356,4313,857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3552,1601,5660,4852,6794,5331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2638,9630,26517,7916,6770,4889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25915,1537,440138,7038,6925,10686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,10667,5660,427,3899,5830
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7352,2110,79001,8678,3174,285362
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,596,1374,80331,2786,84334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56259,3373,5563,4846,2597,3489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4351,4318,941,6833,1806,7026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406,169026,64432,2804,123099,3606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4358,336,344,205327,7040,123283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 411,929,4627,6582,8862,51094
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54552,54901,7076,1373,26175,51099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160428,23304,151,3172,2572,3507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54539,145264,85479,7376,8743,161247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1186,23038,63931,51099,3485,201595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5538,4925,54331,56922,1537,7037
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3162,844,4705,4720,268,6716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2746,411,83854,55163,116085,6721
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406,1351,5328,847,5970,6183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4719,3570,91869,55065,104,2896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3929,2696,23389,1490,197131,6338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4803,9630,537,94235,4128,1353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,795,1489,65985,10999,361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388962,54600,3240,29880,56259,406991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51422,5126,3440,1621,79934,57001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2266,4864,4714,50506,10667,7390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,118,729230,1435,9630,4656
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 940,26175,1889,2099,3551,8714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57817,518,9692,4878,7097,5054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3291,959,6401,7386,1471,353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2581,5078,9365,3073,8743,655
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4069,6236,7942,7098,593,1347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7172,2155,388753,79068,491,48
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23411,52,4968,5901,338821,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 410,6199,5625,5499,3054,5139
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51024,4724,92667,94235,57505,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,10842,91949,64131,4012,284958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2762,1537,83884,10008,3155,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1738,6338,9131,5241,2055,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,4695,37,3034,4968,11019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1363,51085,1815,2746,7515,57176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3242,3060,22797,2308,10195,84693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7124,7018,11095,1543,5241,1497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63899,1893,407011,3074,3458,211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,3958,9672,4968,166785,153642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2752,1524,5373,4843,11131,2100
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80267,5468,50943,6339,52,6891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3953,3636,9672,6565,55670,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5126,3759,197131,5901,2157,54539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5925,2203,4724,51604,6932,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,55526,5264,6720,4790,5571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284184,151,8842,3813,22796,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1348,51103,2590,859,583,10845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 120227,6464,2310,6338,790,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 119559,2101,4282,7076,406,1514
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1906,54809,3507,4878,345,7428
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7019,2590,6248,6556,23054,3710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,3458,5406,29928,5443,6775
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,627,7287,7076,79736,54982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84902,148979,91942,1208,4319,5261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2678,169792,5444,6948,80347,506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,199,10599,388,84447,5836
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,5476,7372,3073,653,54549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8802,1641,241,3032,627,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,112817,4760,1029,5476,4153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5345,6401,8802,6571,57678,9512
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,6402,5068,10874,948,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 197322,8660,54575,4718,4968,27125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4780,197322,81689,2170,2100,867
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84300,2864,116228,538,4247,2932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6647,4286,4035,8604,3709,1859
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,7325,43,10008,80339,22978
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 640,5465,35,2876,387787,2896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3899,6678,2335,6462,655,4012
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10991,10062,116150,3658,64919,51604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7052,5286,9388,2495,4159,8560
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3759,122961,84274,367,125988,6403
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,5498,51144,5372,10524,10935
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2752,3717,7276,11132,3586,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 847,493,57570,51604,8877,1116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1815,2740,4594,3596,7424,5919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1444,4543,9377,2641,2006,5239
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,1558,1859,133,4544,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,256471,10730,3606,54931,9971
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1571,2303,23038,3113,147007,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 517,291,51083,56999,3101,3703
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5230,3562,22820,4694,10965,53905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4000,134,197322,5601,11213,5369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,6445,656,1234,133,27089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 221935,55283,3784,5228,2890,1374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4726,6183,3054,2109,8567,7319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1584,5369,55005,2948,51458,344905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1644,341,137682,1594,6519,9382
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1815,1490,655,1786,55670,5443
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64689,3480,3645,539,5476,85365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3954,462,7391,2720,3710,55037
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
74.226 1.033 75.832
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.728 | 0.031 | 1.554 | |