| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-02-24 11:57 -0500 (Tue, 24 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4891 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1006/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.16.1 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.16.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz |
| StartedAt: 2026-02-24 00:25:42 -0500 (Tue, 24 Feb 2026) |
| EndedAt: 2026-02-24 00:40:45 -0500 (Tue, 24 Feb 2026) |
| EllapsedTime: 903.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.16.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 33.723 0.472 34.196
var_imp 32.839 0.631 33.472
FSmethod 32.666 0.433 33.101
pred_ensembel 12.705 0.098 11.521
enrichfindP 0.540 0.045 15.316
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.16.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 96.833263
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 98.758084
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 98.527545
iter 10 value 93.582419
final value 93.582418
converged
Fitting Repeat 4
# weights: 103
initial value 98.297623
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 110.237488
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 102.647443
iter 10 value 92.555650
iter 20 value 91.691333
iter 30 value 91.632825
final value 91.631953
converged
Fitting Repeat 2
# weights: 305
initial value 94.163569
iter 10 value 93.410332
final value 93.410246
converged
Fitting Repeat 3
# weights: 305
initial value 107.206441
iter 10 value 93.582418
iter 10 value 93.582418
iter 10 value 93.582418
final value 93.582418
converged
Fitting Repeat 4
# weights: 305
initial value 101.905377
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 97.408048
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 98.624646
iter 10 value 92.675378
iter 20 value 92.410492
iter 30 value 92.402248
final value 92.402236
converged
Fitting Repeat 2
# weights: 507
initial value 100.077718
final value 93.582418
converged
Fitting Repeat 3
# weights: 507
initial value 94.200731
final value 93.582418
converged
Fitting Repeat 4
# weights: 507
initial value 95.630958
iter 10 value 86.875885
iter 20 value 82.087254
iter 30 value 81.046814
iter 40 value 80.986448
iter 50 value 80.986280
final value 80.986275
converged
Fitting Repeat 5
# weights: 507
initial value 100.932147
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 96.893710
iter 10 value 91.487200
iter 20 value 83.553945
iter 30 value 82.252754
iter 40 value 81.858148
iter 50 value 81.524797
iter 60 value 81.442278
iter 70 value 81.436603
final value 81.436543
converged
Fitting Repeat 2
# weights: 103
initial value 108.006987
iter 10 value 94.195060
iter 20 value 94.047040
iter 30 value 83.679367
iter 40 value 83.430408
iter 50 value 81.934798
iter 60 value 81.832011
iter 70 value 81.824407
final value 81.824398
converged
Fitting Repeat 3
# weights: 103
initial value 103.299177
iter 10 value 94.054830
iter 20 value 87.644732
iter 30 value 83.375825
iter 40 value 81.972236
iter 50 value 81.850929
iter 60 value 81.825187
final value 81.824398
converged
Fitting Repeat 4
# weights: 103
initial value 99.917928
iter 10 value 94.025809
iter 20 value 93.637138
iter 30 value 93.527745
iter 40 value 93.483728
iter 50 value 83.318120
iter 60 value 80.998011
iter 70 value 80.752816
iter 80 value 79.432141
iter 90 value 78.273179
iter 100 value 77.976307
final value 77.976307
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.431080
iter 10 value 93.977075
iter 20 value 92.776087
iter 30 value 90.485455
iter 40 value 90.401460
iter 50 value 86.047411
iter 60 value 82.741505
iter 70 value 79.515822
iter 80 value 79.433550
iter 90 value 78.728911
iter 100 value 78.300371
final value 78.300371
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 113.599365
iter 10 value 93.965803
iter 20 value 84.297425
iter 30 value 83.562627
iter 40 value 81.776251
iter 50 value 81.639452
iter 60 value 81.498941
iter 70 value 81.025232
iter 80 value 80.046236
iter 90 value 78.593094
iter 100 value 78.175521
final value 78.175521
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.789472
iter 10 value 94.645153
iter 20 value 93.981982
iter 30 value 93.648159
iter 40 value 86.251637
iter 50 value 83.716209
iter 60 value 82.112740
iter 70 value 80.104253
iter 80 value 79.627950
iter 90 value 79.288797
iter 100 value 77.843493
final value 77.843493
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.089757
iter 10 value 94.238407
iter 20 value 93.534374
iter 30 value 92.616154
iter 40 value 86.601522
iter 50 value 84.847566
iter 60 value 84.395009
iter 70 value 83.962583
iter 80 value 81.307735
iter 90 value 80.749775
iter 100 value 79.151085
final value 79.151085
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.418648
iter 10 value 94.516164
iter 20 value 93.424244
iter 30 value 88.509281
iter 40 value 87.901494
iter 50 value 86.777633
iter 60 value 81.540223
iter 70 value 79.090697
iter 80 value 78.729308
iter 90 value 78.437022
iter 100 value 78.345252
final value 78.345252
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.342809
iter 10 value 93.844117
iter 20 value 89.547805
iter 30 value 88.049697
iter 40 value 82.975509
iter 50 value 80.613064
iter 60 value 79.682091
iter 70 value 78.842094
iter 80 value 78.548771
iter 90 value 77.956077
iter 100 value 77.478579
final value 77.478579
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.753658
iter 10 value 93.619386
iter 20 value 93.060702
iter 30 value 92.892417
iter 40 value 91.398893
iter 50 value 89.516272
iter 60 value 85.885617
iter 70 value 85.050094
iter 80 value 84.132529
iter 90 value 80.309347
iter 100 value 78.343442
final value 78.343442
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.061374
iter 10 value 93.992847
iter 20 value 83.979269
iter 30 value 81.855124
iter 40 value 79.813396
iter 50 value 78.449324
iter 60 value 77.922454
iter 70 value 77.017259
iter 80 value 76.697803
iter 90 value 76.555220
iter 100 value 76.425101
final value 76.425101
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.464425
iter 10 value 94.129515
iter 20 value 93.617116
iter 30 value 93.011940
iter 40 value 88.619716
iter 50 value 86.050712
iter 60 value 85.242663
iter 70 value 84.130340
iter 80 value 79.935226
iter 90 value 78.003078
iter 100 value 77.222552
final value 77.222552
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.839863
iter 10 value 94.125493
iter 20 value 90.926145
iter 30 value 87.839401
iter 40 value 85.709892
iter 50 value 85.313501
iter 60 value 84.626327
iter 70 value 82.747980
iter 80 value 81.798354
iter 90 value 81.270298
iter 100 value 80.294125
final value 80.294125
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.184430
iter 10 value 95.769607
iter 20 value 93.706512
iter 30 value 92.543572
iter 40 value 87.365844
iter 50 value 81.166957
iter 60 value 80.639489
iter 70 value 79.003408
iter 80 value 78.685142
iter 90 value 78.363597
iter 100 value 78.284668
final value 78.284668
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 110.592472
final value 94.054401
converged
Fitting Repeat 2
# weights: 103
initial value 95.844331
final value 94.054562
converged
Fitting Repeat 3
# weights: 103
initial value 98.479112
final value 94.054403
converged
Fitting Repeat 4
# weights: 103
initial value 95.085354
iter 10 value 93.412239
iter 20 value 93.406672
final value 93.291889
converged
Fitting Repeat 5
# weights: 103
initial value 95.843999
final value 94.054476
converged
Fitting Repeat 1
# weights: 305
initial value 98.205623
iter 10 value 93.494261
iter 20 value 93.469356
iter 30 value 93.465605
iter 40 value 92.909575
iter 50 value 83.340889
iter 60 value 80.652790
iter 70 value 80.591652
iter 80 value 80.556482
iter 90 value 80.554275
iter 100 value 80.546670
final value 80.546670
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.949723
iter 10 value 93.435423
iter 20 value 93.415416
iter 30 value 93.410781
iter 40 value 92.481597
iter 50 value 84.567844
iter 60 value 84.564650
iter 70 value 84.525225
iter 80 value 82.439510
iter 90 value 81.820642
iter 100 value 81.818793
final value 81.818793
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.305628
iter 10 value 94.056435
iter 20 value 93.639149
iter 30 value 93.464612
final value 93.464606
converged
Fitting Repeat 4
# weights: 305
initial value 122.756504
iter 10 value 93.587415
iter 20 value 93.583341
final value 93.582821
converged
Fitting Repeat 5
# weights: 305
initial value 101.412675
iter 10 value 92.571791
iter 20 value 92.253174
iter 30 value 92.251469
iter 40 value 91.068480
iter 50 value 89.377936
iter 60 value 89.259782
iter 70 value 89.149113
iter 80 value 89.148359
iter 90 value 89.147524
final value 89.147405
converged
Fitting Repeat 1
# weights: 507
initial value 102.347352
iter 10 value 94.060923
iter 20 value 86.622271
iter 30 value 82.307557
iter 40 value 82.269662
iter 50 value 82.231026
iter 60 value 82.165968
iter 70 value 82.165174
iter 80 value 79.881467
iter 90 value 79.655157
iter 100 value 79.217953
final value 79.217953
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 100.948276
iter 10 value 84.913319
iter 20 value 84.176445
iter 30 value 84.173626
iter 40 value 83.145889
iter 50 value 82.900234
iter 60 value 82.897861
final value 82.890831
converged
Fitting Repeat 3
# weights: 507
initial value 112.870926
iter 10 value 94.061004
iter 20 value 94.045242
iter 30 value 93.319485
iter 40 value 83.444136
iter 50 value 78.093301
iter 60 value 77.442572
iter 70 value 77.417893
iter 80 value 77.408221
iter 90 value 77.400678
iter 100 value 77.382739
final value 77.382739
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 118.653444
iter 10 value 93.591196
iter 20 value 93.560511
iter 30 value 93.162763
iter 40 value 90.076156
iter 50 value 85.426956
iter 60 value 83.419342
iter 70 value 83.295298
iter 80 value 83.295029
iter 90 value 83.293499
iter 90 value 83.293499
final value 83.293446
converged
Fitting Repeat 5
# weights: 507
initial value 98.396320
iter 10 value 93.962667
iter 20 value 93.952803
iter 30 value 93.172623
iter 40 value 84.781790
iter 50 value 83.936822
iter 60 value 83.936368
iter 60 value 83.936368
iter 60 value 83.936367
final value 83.936367
converged
Fitting Repeat 1
# weights: 103
initial value 98.475260
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.777537
iter 10 value 94.484255
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.538843
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 99.349090
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.238426
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 104.165682
iter 10 value 94.291920
final value 94.291893
converged
Fitting Repeat 2
# weights: 305
initial value 95.920930
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 101.506908
iter 10 value 91.458835
final value 91.404237
converged
Fitting Repeat 4
# weights: 305
initial value 95.911412
iter 10 value 94.291892
iter 10 value 94.291892
iter 10 value 94.291892
final value 94.291892
converged
Fitting Repeat 5
# weights: 305
initial value 95.449549
final value 94.291892
converged
Fitting Repeat 1
# weights: 507
initial value 107.538688
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 102.230770
final value 94.473119
converged
Fitting Repeat 3
# weights: 507
initial value 99.560099
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 108.316949
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 105.835812
final value 94.322896
converged
Fitting Repeat 1
# weights: 103
initial value 109.171714
iter 10 value 94.492030
iter 20 value 94.439028
iter 30 value 93.424472
iter 40 value 91.826714
iter 50 value 90.515102
iter 60 value 90.396118
iter 70 value 89.250231
iter 80 value 83.128479
iter 90 value 81.660917
iter 100 value 81.153047
final value 81.153047
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.448730
iter 10 value 94.488490
iter 20 value 94.415243
iter 30 value 92.880249
iter 40 value 87.792919
iter 50 value 82.488182
iter 60 value 81.633925
iter 70 value 81.202916
iter 80 value 80.846328
iter 90 value 80.667390
final value 80.667363
converged
Fitting Repeat 3
# weights: 103
initial value 97.087383
iter 10 value 94.486877
iter 20 value 94.486612
iter 30 value 86.646375
iter 40 value 84.878162
iter 50 value 84.541099
iter 60 value 84.322372
iter 70 value 83.468757
iter 80 value 83.279532
iter 90 value 83.127351
iter 100 value 82.694542
final value 82.694542
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.730432
iter 10 value 93.865046
iter 20 value 90.516530
iter 30 value 88.914898
iter 40 value 85.180063
iter 50 value 83.310795
iter 60 value 82.873323
iter 70 value 82.830916
iter 80 value 82.699723
final value 82.693747
converged
Fitting Repeat 5
# weights: 103
initial value 97.826887
iter 10 value 94.488455
iter 20 value 86.517317
iter 30 value 85.058888
iter 40 value 84.658996
iter 50 value 84.382794
iter 60 value 82.631854
iter 70 value 82.407116
iter 80 value 82.283455
iter 90 value 82.247317
final value 82.243180
converged
Fitting Repeat 1
# weights: 305
initial value 105.344279
iter 10 value 94.844963
iter 20 value 92.398188
iter 30 value 90.377167
iter 40 value 88.554632
iter 50 value 83.153193
iter 60 value 82.848089
iter 70 value 81.564642
iter 80 value 81.159253
iter 90 value 80.873798
iter 100 value 80.828823
final value 80.828823
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 118.945780
iter 10 value 89.891707
iter 20 value 86.391242
iter 30 value 85.699204
iter 40 value 83.156050
iter 50 value 80.273203
iter 60 value 79.821739
iter 70 value 79.572500
iter 80 value 79.533318
iter 90 value 79.514306
iter 100 value 79.503382
final value 79.503382
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.190195
iter 10 value 94.126957
iter 20 value 85.361674
iter 30 value 84.163379
iter 40 value 82.822881
iter 50 value 80.416767
iter 60 value 79.880492
iter 70 value 79.483264
iter 80 value 79.393020
iter 90 value 79.380563
iter 100 value 79.372625
final value 79.372625
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 101.371001
iter 10 value 93.913418
iter 20 value 84.833847
iter 30 value 84.225103
iter 40 value 81.996982
iter 50 value 81.133746
iter 60 value 80.398878
iter 70 value 80.234044
iter 80 value 79.808777
iter 90 value 79.528306
iter 100 value 79.393687
final value 79.393687
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.072156
iter 10 value 94.477735
iter 20 value 91.853271
iter 30 value 90.393086
iter 40 value 86.090339
iter 50 value 83.898248
iter 60 value 82.321612
iter 70 value 81.394274
iter 80 value 81.035466
iter 90 value 80.939598
iter 100 value 80.591526
final value 80.591526
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 109.848010
iter 10 value 95.052751
iter 20 value 91.065203
iter 30 value 88.522720
iter 40 value 84.616498
iter 50 value 83.660290
iter 60 value 82.968902
iter 70 value 82.263358
iter 80 value 81.367068
iter 90 value 80.208143
iter 100 value 79.463472
final value 79.463472
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.429936
iter 10 value 94.901787
iter 20 value 89.736555
iter 30 value 86.640706
iter 40 value 85.706674
iter 50 value 84.572598
iter 60 value 83.530003
iter 70 value 81.733039
iter 80 value 80.145420
iter 90 value 79.534555
iter 100 value 79.129587
final value 79.129587
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.091864
iter 10 value 92.103468
iter 20 value 84.806384
iter 30 value 84.204662
iter 40 value 84.089506
iter 50 value 83.856976
iter 60 value 81.938607
iter 70 value 81.214623
iter 80 value 80.940262
iter 90 value 80.766251
iter 100 value 80.734247
final value 80.734247
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.327316
iter 10 value 94.540827
iter 20 value 87.971323
iter 30 value 84.328307
iter 40 value 83.961396
iter 50 value 83.835905
iter 60 value 83.552476
iter 70 value 82.022980
iter 80 value 81.468775
iter 90 value 81.369655
iter 100 value 81.347137
final value 81.347137
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.075827
iter 10 value 92.940991
iter 20 value 84.756715
iter 30 value 84.002474
iter 40 value 82.782258
iter 50 value 82.614917
iter 60 value 82.532001
iter 70 value 82.096468
iter 80 value 80.773709
iter 90 value 80.034270
iter 100 value 79.834067
final value 79.834067
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.246784
final value 94.486125
converged
Fitting Repeat 2
# weights: 103
initial value 108.209716
final value 94.485773
converged
Fitting Repeat 3
# weights: 103
initial value 100.170471
iter 10 value 94.485875
iter 20 value 94.420332
iter 30 value 90.796147
iter 40 value 90.789560
final value 90.789524
converged
Fitting Repeat 4
# weights: 103
initial value 102.558227
final value 94.485884
converged
Fitting Repeat 5
# weights: 103
initial value 104.963228
final value 94.485773
converged
Fitting Repeat 1
# weights: 305
initial value 97.826465
iter 10 value 94.484735
iter 20 value 93.155715
iter 30 value 84.371168
final value 84.371164
converged
Fitting Repeat 2
# weights: 305
initial value 94.786459
iter 10 value 94.487560
iter 20 value 94.467487
iter 30 value 86.186097
iter 40 value 82.169750
iter 50 value 82.167893
iter 60 value 80.528664
iter 70 value 79.781312
iter 80 value 79.489934
iter 90 value 79.250903
iter 100 value 78.650866
final value 78.650866
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.463148
iter 10 value 94.488703
iter 20 value 94.443772
iter 30 value 90.776405
iter 40 value 83.862452
iter 50 value 83.163218
iter 60 value 83.158782
iter 70 value 83.157153
iter 70 value 83.157153
final value 83.157153
converged
Fitting Repeat 4
# weights: 305
initial value 97.847062
iter 10 value 94.490079
iter 20 value 94.489252
iter 30 value 94.432671
iter 40 value 91.880395
iter 50 value 91.873433
iter 60 value 91.872286
iter 70 value 89.502591
iter 80 value 83.775905
iter 90 value 82.729180
iter 100 value 82.727651
final value 82.727651
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.427201
iter 10 value 94.489321
iter 20 value 94.342856
iter 30 value 83.619439
iter 40 value 80.520986
iter 50 value 79.907966
iter 60 value 79.659208
iter 70 value 79.367585
iter 80 value 78.592633
iter 90 value 78.275033
iter 100 value 78.265706
final value 78.265706
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 96.793372
iter 10 value 94.300037
iter 20 value 93.783259
iter 30 value 84.051813
iter 40 value 82.719321
iter 50 value 82.690787
iter 60 value 82.689772
iter 70 value 80.045343
iter 80 value 79.185792
iter 90 value 78.327797
iter 100 value 78.310590
final value 78.310590
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.191086
iter 10 value 94.495271
iter 20 value 94.433188
iter 30 value 88.772659
iter 40 value 85.931847
iter 50 value 84.709887
iter 60 value 83.201530
iter 70 value 82.986479
iter 80 value 82.893305
iter 90 value 82.892225
iter 100 value 82.870545
final value 82.870545
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.204701
iter 10 value 94.330501
iter 20 value 92.940745
iter 30 value 83.830213
iter 40 value 83.594280
final value 83.594215
converged
Fitting Repeat 4
# weights: 507
initial value 106.125080
iter 10 value 94.492204
iter 20 value 94.216557
iter 30 value 87.926965
iter 40 value 83.340128
iter 50 value 83.221152
iter 60 value 82.163827
iter 70 value 82.133226
iter 80 value 82.132510
iter 90 value 82.130037
iter 100 value 81.943277
final value 81.943277
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.761936
iter 10 value 94.487743
iter 20 value 94.431443
iter 30 value 86.066751
iter 40 value 85.412211
iter 50 value 83.808390
iter 60 value 83.710701
iter 70 value 83.706741
iter 80 value 83.675496
iter 90 value 83.674199
iter 100 value 80.288792
final value 80.288792
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.901332
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 102.939935
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.840054
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.723450
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 97.101353
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 96.315738
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 99.018629
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 94.870845
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 98.885214
final value 94.484210
converged
Fitting Repeat 5
# weights: 305
initial value 99.985233
final value 93.772974
converged
Fitting Repeat 1
# weights: 507
initial value 97.065983
iter 10 value 93.619082
iter 20 value 90.793627
iter 30 value 90.788892
iter 40 value 90.788413
final value 90.788412
converged
Fitting Repeat 2
# weights: 507
initial value 96.003091
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 102.552587
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 107.354191
iter 10 value 93.879452
iter 20 value 89.790613
iter 30 value 89.377253
iter 40 value 89.025470
iter 50 value 89.020668
final value 89.020652
converged
Fitting Repeat 5
# weights: 507
initial value 99.671734
iter 10 value 93.806339
final value 93.772973
converged
Fitting Repeat 1
# weights: 103
initial value 105.643770
iter 10 value 93.733687
iter 20 value 92.679976
iter 30 value 84.552421
iter 40 value 84.087766
iter 50 value 83.192742
iter 60 value 82.623476
iter 70 value 82.231633
iter 80 value 82.054390
iter 80 value 82.054390
iter 80 value 82.054390
final value 82.054390
converged
Fitting Repeat 2
# weights: 103
initial value 106.610616
iter 10 value 94.444813
iter 20 value 93.638896
iter 30 value 92.907028
iter 40 value 86.545286
iter 50 value 85.469283
iter 60 value 84.032261
iter 70 value 83.912917
iter 80 value 82.886153
iter 90 value 82.194397
iter 100 value 82.054394
final value 82.054394
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.365798
iter 10 value 93.745049
iter 20 value 86.115514
iter 30 value 85.616953
iter 40 value 85.340685
iter 50 value 83.789333
iter 60 value 82.459218
iter 70 value 82.149727
iter 80 value 82.054393
final value 82.054390
converged
Fitting Repeat 4
# weights: 103
initial value 105.630277
iter 10 value 94.486598
iter 20 value 94.394336
iter 30 value 93.981138
iter 40 value 93.977004
iter 50 value 93.701365
iter 60 value 93.040972
iter 70 value 86.252705
iter 80 value 85.846907
iter 90 value 84.746191
iter 100 value 84.541370
final value 84.541370
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 116.773739
iter 10 value 94.557149
iter 20 value 94.393993
iter 30 value 94.082288
iter 40 value 91.836437
iter 50 value 84.657085
iter 60 value 84.051584
iter 70 value 83.837388
iter 80 value 83.218882
iter 90 value 82.412392
iter 100 value 82.106017
final value 82.106017
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 106.918032
iter 10 value 93.665583
iter 20 value 86.332057
iter 30 value 83.463872
iter 40 value 83.095406
iter 50 value 82.882185
iter 60 value 82.496493
iter 70 value 82.351008
iter 80 value 81.938333
iter 90 value 81.856659
iter 100 value 81.761869
final value 81.761869
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.246304
iter 10 value 94.521307
iter 20 value 94.401108
iter 30 value 93.594132
iter 40 value 87.693486
iter 50 value 84.799499
iter 60 value 83.488986
iter 70 value 83.286165
iter 80 value 82.776009
iter 90 value 82.557338
iter 100 value 82.236814
final value 82.236814
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.666619
iter 10 value 93.828628
iter 20 value 87.307915
iter 30 value 82.907947
iter 40 value 82.138458
iter 50 value 81.445142
iter 60 value 81.157569
iter 70 value 80.986079
iter 80 value 80.777691
iter 90 value 80.694382
iter 100 value 80.541324
final value 80.541324
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.183181
iter 10 value 94.607718
iter 20 value 89.680372
iter 30 value 85.834495
iter 40 value 84.879300
iter 50 value 84.244357
iter 60 value 84.205445
iter 70 value 83.989623
iter 80 value 82.971881
iter 90 value 81.808504
iter 100 value 81.171928
final value 81.171928
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.182696
iter 10 value 94.450366
iter 20 value 92.460493
iter 30 value 84.788395
iter 40 value 83.908502
iter 50 value 81.858971
iter 60 value 81.286832
iter 70 value 81.160623
iter 80 value 81.126983
iter 90 value 81.098041
iter 100 value 81.084834
final value 81.084834
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.231937
iter 10 value 94.247553
iter 20 value 87.785995
iter 30 value 86.261523
iter 40 value 85.070836
iter 50 value 83.784207
iter 60 value 83.650209
iter 70 value 83.481745
iter 80 value 82.207611
iter 90 value 81.137434
iter 100 value 81.027258
final value 81.027258
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 126.179629
iter 10 value 93.310007
iter 20 value 88.719508
iter 30 value 86.733530
iter 40 value 84.522161
iter 50 value 83.680320
iter 60 value 82.689208
iter 70 value 82.307696
iter 80 value 82.198087
iter 90 value 81.656046
iter 100 value 81.417835
final value 81.417835
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.162183
iter 10 value 93.686655
iter 20 value 89.439555
iter 30 value 85.998635
iter 40 value 84.743945
iter 50 value 82.984125
iter 60 value 81.865596
iter 70 value 81.675559
iter 80 value 81.429633
iter 90 value 81.088128
iter 100 value 80.952558
final value 80.952558
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 124.730965
iter 10 value 94.186466
iter 20 value 90.490640
iter 30 value 88.747866
iter 40 value 86.476498
iter 50 value 85.801842
iter 60 value 84.602060
iter 70 value 83.285256
iter 80 value 83.006856
iter 90 value 82.041251
iter 100 value 81.401804
final value 81.401804
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.743729
iter 10 value 94.321636
iter 20 value 90.661037
iter 30 value 87.217977
iter 40 value 84.745191
iter 50 value 82.915657
iter 60 value 81.490020
iter 70 value 81.371605
iter 80 value 81.132706
iter 90 value 80.812041
iter 100 value 80.716827
final value 80.716827
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.384368
iter 10 value 93.825751
final value 93.774851
converged
Fitting Repeat 2
# weights: 103
initial value 99.099726
final value 93.638729
converged
Fitting Repeat 3
# weights: 103
initial value 97.587710
final value 94.485904
converged
Fitting Repeat 4
# weights: 103
initial value 100.071423
final value 94.485648
converged
Fitting Repeat 5
# weights: 103
initial value 97.259171
final value 94.486126
converged
Fitting Repeat 1
# weights: 305
initial value 105.255409
iter 10 value 94.489121
iter 20 value 94.484932
iter 30 value 93.774114
final value 93.774093
converged
Fitting Repeat 2
# weights: 305
initial value 101.092242
iter 10 value 94.489396
iter 20 value 94.484637
iter 30 value 93.670640
iter 40 value 93.491327
iter 50 value 85.787731
iter 60 value 83.103693
iter 70 value 82.713318
iter 80 value 81.852443
iter 90 value 81.270760
iter 100 value 81.219718
final value 81.219718
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.170513
iter 10 value 93.398150
iter 20 value 93.390054
iter 30 value 93.388143
iter 40 value 93.387771
iter 50 value 93.382582
iter 60 value 86.102385
iter 70 value 85.905353
iter 80 value 85.902139
iter 90 value 85.902055
iter 90 value 85.902055
final value 85.902055
converged
Fitting Repeat 4
# weights: 305
initial value 96.790966
iter 10 value 94.328143
iter 20 value 92.584520
iter 30 value 85.490332
iter 40 value 85.490008
iter 50 value 85.463950
iter 60 value 85.462646
iter 70 value 85.462203
final value 85.462136
converged
Fitting Repeat 5
# weights: 305
initial value 97.421563
iter 10 value 94.489987
iter 20 value 94.449574
iter 30 value 91.030260
iter 40 value 85.679245
iter 50 value 85.638503
iter 60 value 85.601688
iter 70 value 85.597089
iter 80 value 85.581731
iter 90 value 85.577673
iter 100 value 85.577111
final value 85.577111
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 100.661910
iter 10 value 93.575569
iter 20 value 93.509252
iter 30 value 93.374271
final value 93.374264
converged
Fitting Repeat 2
# weights: 507
initial value 96.267958
iter 10 value 93.575974
iter 20 value 90.838508
iter 30 value 85.448920
iter 40 value 85.431699
iter 50 value 82.677492
iter 60 value 82.133554
iter 70 value 80.706719
iter 80 value 80.653671
iter 90 value 80.588538
iter 100 value 80.584775
final value 80.584775
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 94.594535
iter 10 value 91.330986
iter 20 value 91.328256
iter 30 value 90.740520
iter 40 value 89.036159
iter 50 value 87.830536
iter 60 value 87.829958
iter 70 value 87.828411
iter 80 value 86.468774
iter 90 value 85.376017
final value 85.375922
converged
Fitting Repeat 4
# weights: 507
initial value 100.827085
iter 10 value 93.783348
iter 20 value 93.781711
iter 30 value 92.394401
iter 40 value 87.225521
iter 50 value 87.170133
iter 60 value 86.500094
iter 70 value 84.017077
iter 80 value 83.579540
iter 90 value 83.185245
iter 100 value 83.053131
final value 83.053131
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.697883
iter 10 value 94.492911
iter 20 value 94.138674
iter 30 value 93.774361
final value 93.774266
converged
Fitting Repeat 1
# weights: 103
initial value 98.132960
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.988715
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.515679
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 109.627977
iter 10 value 93.941612
final value 93.809648
converged
Fitting Repeat 5
# weights: 103
initial value 100.751875
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.083817
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 2
# weights: 305
initial value 116.792613
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 99.009339
final value 94.354395
converged
Fitting Repeat 4
# weights: 305
initial value 105.456536
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.028944
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 101.648145
iter 10 value 90.707086
iter 20 value 88.328738
iter 30 value 88.250806
iter 40 value 87.114158
final value 87.113878
converged
Fitting Repeat 2
# weights: 507
initial value 102.158148
iter 10 value 94.243406
iter 20 value 85.171456
iter 30 value 84.479679
iter 40 value 84.128286
iter 50 value 84.119834
final value 84.119780
converged
Fitting Repeat 3
# weights: 507
initial value 101.012699
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 110.949998
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 101.753030
final value 94.353550
converged
Fitting Repeat 1
# weights: 103
initial value 105.907574
iter 10 value 94.453264
iter 20 value 94.173305
iter 30 value 94.148377
iter 40 value 93.925881
iter 50 value 87.619465
iter 60 value 84.166228
iter 70 value 83.825780
iter 80 value 83.613686
iter 90 value 82.768049
iter 100 value 81.971542
final value 81.971542
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.976396
iter 10 value 94.492894
iter 20 value 91.389331
iter 30 value 86.211990
iter 40 value 85.422080
iter 50 value 85.216052
iter 60 value 85.184318
iter 70 value 85.182870
iter 80 value 84.200931
iter 90 value 83.858884
iter 100 value 83.782463
final value 83.782463
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 97.009965
iter 10 value 94.411711
iter 20 value 93.998343
iter 30 value 90.150682
iter 40 value 84.714002
iter 50 value 84.387562
iter 60 value 83.609063
iter 70 value 82.915550
iter 80 value 82.236225
iter 90 value 82.196036
iter 100 value 82.159943
final value 82.159943
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 104.328747
iter 10 value 94.486831
iter 20 value 94.260404
iter 30 value 94.051410
iter 40 value 93.850927
iter 50 value 88.722076
iter 60 value 85.054669
iter 70 value 84.657548
iter 80 value 84.315459
iter 90 value 83.154164
iter 100 value 82.236708
final value 82.236708
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 108.361943
iter 10 value 94.256458
iter 20 value 92.228726
iter 30 value 91.721657
iter 40 value 91.661366
iter 50 value 91.660740
final value 91.660737
converged
Fitting Repeat 1
# weights: 305
initial value 104.885049
iter 10 value 94.488302
iter 20 value 94.471456
iter 30 value 87.714445
iter 40 value 86.194262
iter 50 value 85.283249
iter 60 value 84.086930
iter 70 value 83.855520
iter 80 value 82.281201
iter 90 value 81.521380
iter 100 value 81.122974
final value 81.122974
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.244376
iter 10 value 93.997067
iter 20 value 93.818626
iter 30 value 90.269949
iter 40 value 89.148233
iter 50 value 86.124659
iter 60 value 84.880020
iter 70 value 83.146502
iter 80 value 81.758916
iter 90 value 81.021090
iter 100 value 80.893260
final value 80.893260
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.297189
iter 10 value 94.452320
iter 20 value 92.669528
iter 30 value 85.512910
iter 40 value 82.239432
iter 50 value 81.964783
iter 60 value 81.820222
iter 70 value 81.459843
iter 80 value 81.078244
iter 90 value 80.717000
iter 100 value 80.573196
final value 80.573196
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 121.173469
iter 10 value 95.897040
iter 20 value 94.429090
iter 30 value 93.350534
iter 40 value 87.130847
iter 50 value 86.382046
iter 60 value 85.939224
iter 70 value 85.342422
iter 80 value 83.791235
iter 90 value 83.144531
iter 100 value 81.879839
final value 81.879839
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.829299
iter 10 value 93.749580
iter 20 value 84.993538
iter 30 value 84.341286
iter 40 value 83.815230
iter 50 value 82.818502
iter 60 value 82.128623
iter 70 value 81.940374
iter 80 value 81.832468
iter 90 value 81.781580
iter 100 value 81.603028
final value 81.603028
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 104.251591
iter 10 value 94.476884
iter 20 value 88.213981
iter 30 value 86.096256
iter 40 value 85.979023
iter 50 value 85.628497
iter 60 value 84.564686
iter 70 value 82.553773
iter 80 value 81.442600
iter 90 value 81.291018
iter 100 value 81.137834
final value 81.137834
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.953661
iter 10 value 94.753704
iter 20 value 93.424763
iter 30 value 85.632947
iter 40 value 82.827387
iter 50 value 82.421450
iter 60 value 81.900132
iter 70 value 81.562830
iter 80 value 80.883423
iter 90 value 80.743940
iter 100 value 80.440677
final value 80.440677
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 125.354827
iter 10 value 97.949104
iter 20 value 94.165230
iter 30 value 93.750412
iter 40 value 88.544372
iter 50 value 84.769694
iter 60 value 83.609337
iter 70 value 83.102615
iter 80 value 82.475857
iter 90 value 82.351437
iter 100 value 82.172017
final value 82.172017
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.916948
iter 10 value 94.488939
iter 20 value 92.579924
iter 30 value 91.715256
iter 40 value 87.378105
iter 50 value 85.124892
iter 60 value 83.292623
iter 70 value 82.972306
iter 80 value 82.480978
iter 90 value 81.720271
iter 100 value 80.928682
final value 80.928682
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 125.770396
iter 10 value 94.689201
iter 20 value 91.525170
iter 30 value 86.502993
iter 40 value 83.463074
iter 50 value 81.897295
iter 60 value 81.037860
iter 70 value 80.902522
iter 80 value 80.791872
iter 90 value 80.758062
iter 100 value 80.685924
final value 80.685924
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.568450
iter 10 value 93.212232
iter 20 value 93.076292
iter 30 value 93.043034
iter 40 value 88.495800
iter 50 value 88.251423
iter 60 value 86.040859
iter 70 value 85.529663
iter 80 value 85.490369
iter 90 value 85.490186
iter 100 value 85.489054
final value 85.489054
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.822795
iter 10 value 94.356348
iter 20 value 94.354507
iter 30 value 94.282419
iter 40 value 85.513580
iter 50 value 85.511985
iter 60 value 85.510861
iter 70 value 85.510401
iter 80 value 84.658393
iter 90 value 84.123983
iter 100 value 84.121090
final value 84.121090
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 109.689149
iter 10 value 94.485693
iter 20 value 94.484290
final value 94.484218
converged
Fitting Repeat 4
# weights: 103
initial value 115.618325
iter 10 value 94.485998
final value 94.484246
converged
Fitting Repeat 5
# weights: 103
initial value 99.155327
iter 10 value 94.485635
iter 10 value 94.485634
iter 10 value 94.485633
final value 94.485633
converged
Fitting Repeat 1
# weights: 305
initial value 103.624958
iter 10 value 94.489196
iter 20 value 94.357962
final value 93.810152
converged
Fitting Repeat 2
# weights: 305
initial value 97.537303
iter 10 value 94.485331
iter 20 value 94.478040
iter 30 value 93.938679
iter 40 value 93.753479
final value 93.753315
converged
Fitting Repeat 3
# weights: 305
initial value 100.435352
iter 10 value 94.488907
iter 20 value 94.484288
iter 30 value 93.439958
iter 40 value 91.934665
iter 50 value 91.922143
iter 60 value 88.447747
iter 70 value 84.700587
iter 80 value 84.150707
iter 90 value 83.559156
iter 100 value 82.695054
final value 82.695054
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 97.129588
iter 10 value 94.489150
iter 20 value 92.855751
iter 30 value 90.580085
iter 40 value 90.556554
final value 90.556540
converged
Fitting Repeat 5
# weights: 305
initial value 99.328496
iter 10 value 92.120613
iter 20 value 86.670015
iter 30 value 86.634095
iter 40 value 86.595950
iter 50 value 83.758935
iter 60 value 82.851823
iter 70 value 81.132257
iter 80 value 80.231132
iter 90 value 80.170115
iter 100 value 80.150610
final value 80.150610
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 96.914734
iter 10 value 94.120523
iter 20 value 94.109167
iter 30 value 94.107309
iter 40 value 91.844557
iter 50 value 91.055337
iter 60 value 91.052605
iter 70 value 91.050739
iter 80 value 91.025052
iter 90 value 90.777089
iter 100 value 90.631243
final value 90.631243
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 98.039712
iter 10 value 94.487516
iter 20 value 94.384110
iter 30 value 87.803382
iter 40 value 85.299350
iter 50 value 85.255264
final value 85.255260
converged
Fitting Repeat 3
# weights: 507
initial value 93.644348
iter 10 value 86.751588
iter 20 value 85.139130
iter 30 value 84.512513
iter 40 value 84.503753
iter 50 value 84.497661
iter 60 value 84.387564
iter 70 value 84.149019
iter 80 value 83.776609
iter 90 value 81.739477
iter 100 value 81.157690
final value 81.157690
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.646277
iter 10 value 94.361595
iter 20 value 94.245084
iter 30 value 93.816847
iter 40 value 93.810006
final value 93.809813
converged
Fitting Repeat 5
# weights: 507
initial value 99.883515
iter 10 value 94.368167
iter 20 value 93.919445
iter 30 value 93.305006
iter 40 value 91.542304
iter 50 value 91.094915
iter 60 value 91.037800
final value 91.037787
converged
Fitting Repeat 1
# weights: 103
initial value 106.805443
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 96.040763
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.264169
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 117.934119
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 110.771616
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.056652
iter 10 value 93.974677
iter 20 value 93.972878
iter 20 value 93.972877
iter 20 value 93.972877
final value 93.972877
converged
Fitting Repeat 2
# weights: 305
initial value 99.768458
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 99.102637
iter 10 value 94.032978
final value 94.032967
converged
Fitting Repeat 4
# weights: 305
initial value 103.488644
final value 94.017143
converged
Fitting Repeat 5
# weights: 305
initial value 94.543279
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 114.251394
final value 93.884577
converged
Fitting Repeat 2
# weights: 507
initial value 98.200377
final value 94.032967
converged
Fitting Repeat 3
# weights: 507
initial value 104.126699
iter 10 value 94.012545
iter 20 value 94.009989
final value 94.009972
converged
Fitting Repeat 4
# weights: 507
initial value 100.676044
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 120.125361
iter 10 value 94.075899
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 97.551733
iter 10 value 94.051056
iter 20 value 93.899368
iter 30 value 86.854739
iter 40 value 83.489054
iter 50 value 83.262650
iter 60 value 82.973011
iter 70 value 82.729672
iter 80 value 82.718118
final value 82.718067
converged
Fitting Repeat 2
# weights: 103
initial value 96.721951
iter 10 value 94.055327
iter 20 value 93.914027
iter 30 value 93.682160
iter 40 value 87.947658
iter 50 value 87.510213
iter 60 value 87.145738
iter 70 value 85.351458
iter 80 value 83.285925
iter 90 value 82.758613
iter 100 value 82.719068
final value 82.719068
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 107.263717
iter 10 value 94.013450
iter 20 value 91.120163
iter 30 value 86.413906
iter 40 value 84.056433
iter 50 value 83.474620
iter 60 value 83.373332
iter 70 value 83.306390
iter 80 value 83.228368
iter 90 value 82.867513
iter 100 value 82.722753
final value 82.722753
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.351417
iter 10 value 94.057665
iter 20 value 93.223608
iter 30 value 92.275803
iter 40 value 91.551947
iter 50 value 90.216759
iter 60 value 85.303624
iter 70 value 82.211158
iter 80 value 81.756427
iter 90 value 81.750204
iter 100 value 81.749941
final value 81.749941
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 98.472214
iter 10 value 94.040223
iter 20 value 90.643274
iter 30 value 87.112032
iter 40 value 86.665639
iter 50 value 84.067817
iter 60 value 82.326802
iter 70 value 82.259051
iter 80 value 82.257117
iter 90 value 82.256765
iter 90 value 82.256765
iter 90 value 82.256765
final value 82.256765
converged
Fitting Repeat 1
# weights: 305
initial value 101.730241
iter 10 value 93.998891
iter 20 value 87.732763
iter 30 value 86.435690
iter 40 value 86.125673
iter 50 value 83.289270
iter 60 value 82.720702
iter 70 value 82.469826
iter 80 value 82.079954
iter 90 value 82.064146
iter 100 value 82.010471
final value 82.010471
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.127583
iter 10 value 94.016897
iter 20 value 88.546578
iter 30 value 88.026993
iter 40 value 86.260302
iter 50 value 83.855953
iter 60 value 82.972751
iter 70 value 82.518734
iter 80 value 82.032385
iter 90 value 81.843798
iter 100 value 81.787773
final value 81.787773
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 129.914416
iter 10 value 94.066651
iter 20 value 93.868036
iter 30 value 90.879617
iter 40 value 85.730198
iter 50 value 83.469484
iter 60 value 82.300236
iter 70 value 82.271260
iter 80 value 82.226625
iter 90 value 82.192445
iter 100 value 81.974840
final value 81.974840
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.232617
iter 10 value 93.522769
iter 20 value 84.395430
iter 30 value 83.152926
iter 40 value 82.591294
iter 50 value 82.391373
iter 60 value 81.923840
iter 70 value 81.055681
iter 80 value 80.881057
iter 90 value 80.829395
iter 100 value 80.773537
final value 80.773537
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.259021
iter 10 value 93.980715
iter 20 value 93.824025
iter 30 value 93.022165
iter 40 value 90.347733
iter 50 value 84.302411
iter 60 value 83.850150
iter 70 value 83.643847
iter 80 value 83.019992
iter 90 value 82.917685
iter 100 value 82.629550
final value 82.629550
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 110.245528
iter 10 value 93.644613
iter 20 value 84.984573
iter 30 value 84.490874
iter 40 value 83.748548
iter 50 value 83.109536
iter 60 value 81.354617
iter 70 value 81.086026
iter 80 value 80.872208
iter 90 value 80.821622
iter 100 value 80.694856
final value 80.694856
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 122.003777
iter 10 value 94.290393
iter 20 value 92.086427
iter 30 value 88.629118
iter 40 value 87.720402
iter 50 value 86.515077
iter 60 value 85.554077
iter 70 value 85.459193
iter 80 value 85.095358
iter 90 value 83.347837
iter 100 value 82.362452
final value 82.362452
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 131.483182
iter 10 value 94.067856
iter 20 value 88.005447
iter 30 value 86.850638
iter 40 value 86.050039
iter 50 value 85.163244
iter 60 value 84.495485
iter 70 value 82.751303
iter 80 value 81.958310
iter 90 value 81.751979
iter 100 value 81.556894
final value 81.556894
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 140.887463
iter 10 value 93.343945
iter 20 value 86.285223
iter 30 value 83.537749
iter 40 value 82.672484
iter 50 value 81.532188
iter 60 value 81.008448
iter 70 value 80.758700
iter 80 value 80.642762
iter 90 value 80.621102
iter 100 value 80.535955
final value 80.535955
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.567070
iter 10 value 94.166776
iter 20 value 86.931683
iter 30 value 86.280337
iter 40 value 84.432649
iter 50 value 82.695462
iter 60 value 80.872660
iter 70 value 80.671262
iter 80 value 80.546289
iter 90 value 80.417445
iter 100 value 80.322056
final value 80.322056
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.161347
iter 10 value 94.054632
iter 20 value 94.052955
final value 94.052915
converged
Fitting Repeat 2
# weights: 103
initial value 97.870982
final value 94.054671
converged
Fitting Repeat 3
# weights: 103
initial value 109.156277
final value 94.054589
converged
Fitting Repeat 4
# weights: 103
initial value 103.723194
final value 94.054515
converged
Fitting Repeat 5
# weights: 103
initial value 96.112610
final value 94.054803
converged
Fitting Repeat 1
# weights: 305
initial value 122.563858
iter 10 value 94.037348
iter 20 value 94.033974
iter 30 value 90.051044
iter 40 value 86.522519
iter 50 value 85.735281
iter 60 value 85.730755
iter 70 value 84.517198
iter 80 value 84.279673
iter 90 value 84.030685
iter 90 value 84.030684
iter 90 value 84.030684
final value 84.030684
converged
Fitting Repeat 2
# weights: 305
initial value 109.454990
iter 10 value 94.057594
iter 20 value 94.034943
iter 30 value 93.716405
iter 40 value 84.320619
iter 50 value 83.305327
iter 60 value 83.302713
iter 70 value 83.300327
iter 80 value 83.242068
iter 90 value 82.893692
iter 100 value 82.871075
final value 82.871075
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.565235
iter 10 value 94.057302
iter 20 value 92.885596
iter 30 value 86.324257
iter 40 value 86.185791
iter 50 value 86.178131
iter 60 value 86.176102
iter 70 value 84.577943
iter 80 value 82.988437
iter 90 value 82.868859
final value 82.868461
converged
Fitting Repeat 4
# weights: 305
initial value 95.157094
iter 10 value 94.056015
iter 20 value 93.855764
iter 30 value 87.665602
iter 40 value 86.969673
iter 50 value 86.958453
final value 86.957808
converged
Fitting Repeat 5
# weights: 305
initial value 96.048816
iter 10 value 94.037617
iter 20 value 94.033307
iter 30 value 93.600433
iter 40 value 91.932617
iter 50 value 91.816559
final value 91.785546
converged
Fitting Repeat 1
# weights: 507
initial value 99.424751
iter 10 value 94.041468
iter 20 value 94.039887
iter 30 value 94.033821
final value 94.033805
converged
Fitting Repeat 2
# weights: 507
initial value 96.357520
iter 10 value 94.061384
iter 20 value 93.376573
iter 30 value 91.974072
iter 40 value 88.918864
iter 50 value 88.721852
iter 60 value 88.418776
iter 70 value 87.504243
iter 80 value 87.475706
final value 87.475638
converged
Fitting Repeat 3
# weights: 507
initial value 97.782811
iter 10 value 94.061483
iter 20 value 94.053343
iter 30 value 91.041485
iter 40 value 86.201821
iter 50 value 86.057723
iter 60 value 86.047208
iter 70 value 85.868063
iter 80 value 85.845800
iter 90 value 85.333335
iter 100 value 84.217231
final value 84.217231
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.416143
iter 10 value 94.060415
iter 20 value 93.833965
iter 30 value 87.994953
iter 40 value 85.169992
iter 50 value 85.144667
iter 60 value 85.128371
iter 70 value 85.127176
iter 80 value 85.127066
iter 90 value 85.122559
iter 100 value 85.118324
final value 85.118324
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.106136
iter 10 value 93.917586
iter 20 value 93.892663
iter 30 value 93.836132
iter 40 value 88.753117
iter 50 value 88.000929
iter 60 value 85.072325
iter 70 value 83.458421
iter 80 value 83.433278
iter 90 value 83.430679
iter 100 value 83.324990
final value 83.324990
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 125.139474
iter 10 value 117.977190
iter 20 value 113.961475
iter 30 value 107.269474
iter 40 value 105.056835
iter 50 value 102.902456
iter 60 value 102.459582
iter 70 value 101.551217
iter 80 value 101.451243
iter 90 value 101.247587
iter 100 value 101.079994
final value 101.079994
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 133.953141
iter 10 value 115.930239
iter 20 value 108.749293
iter 30 value 106.174993
iter 40 value 105.446613
iter 50 value 103.518473
iter 60 value 102.816025
iter 70 value 102.104921
iter 80 value 101.045458
iter 90 value 100.963369
iter 100 value 100.866925
final value 100.866925
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 126.282432
iter 10 value 117.890937
iter 20 value 117.692787
iter 30 value 110.979638
iter 40 value 109.661439
iter 50 value 105.890307
iter 60 value 103.898138
iter 70 value 102.756183
iter 80 value 102.431687
iter 90 value 101.981914
iter 100 value 101.483429
final value 101.483429
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 125.187693
iter 10 value 118.352370
iter 20 value 116.346184
iter 30 value 110.397312
iter 40 value 105.118591
iter 50 value 104.693063
iter 60 value 104.239954
iter 70 value 103.069748
iter 80 value 101.483732
iter 90 value 100.802266
iter 100 value 100.787054
final value 100.787054
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 131.825635
iter 10 value 117.896193
iter 20 value 117.803545
iter 30 value 117.442184
iter 40 value 112.858163
iter 50 value 106.596007
iter 60 value 105.586535
iter 70 value 103.510165
iter 80 value 102.746508
iter 90 value 102.475280
iter 100 value 102.206418
final value 102.206418
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Feb 24 00:31:01 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.320 0.777 95.349
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 32.666 | 0.433 | 33.101 | |
| FreqInteractors | 0.423 | 0.030 | 0.453 | |
| calculateAAC | 0.030 | 0.000 | 0.031 | |
| calculateAutocor | 0.295 | 0.013 | 0.308 | |
| calculateCTDC | 0.072 | 0.000 | 0.071 | |
| calculateCTDD | 0.515 | 0.001 | 0.515 | |
| calculateCTDT | 0.197 | 0.002 | 0.200 | |
| calculateCTriad | 0.341 | 0.005 | 0.347 | |
| calculateDC | 0.083 | 0.001 | 0.084 | |
| calculateF | 0.305 | 0.003 | 0.308 | |
| calculateKSAAP | 0.096 | 0.002 | 0.098 | |
| calculateQD_Sm | 1.571 | 0.005 | 1.576 | |
| calculateTC | 1.466 | 0.024 | 1.490 | |
| calculateTC_Sm | 0.242 | 0.002 | 0.244 | |
| corr_plot | 33.723 | 0.472 | 34.196 | |
| enrichfindP | 0.540 | 0.045 | 15.316 | |
| enrichfind_hp | 0.044 | 0.002 | 0.984 | |
| enrichplot | 0.485 | 0.001 | 0.486 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.402 | 0.018 | 3.797 | |
| getHPI | 0 | 0 | 0 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0.000 | 0.000 | 0.001 | |
| impute_missing_data | 0.002 | 0.000 | 0.002 | |
| plotPPI | 0.123 | 0.002 | 0.126 | |
| pred_ensembel | 12.705 | 0.098 | 11.521 | |
| var_imp | 32.839 | 0.631 | 33.472 | |