| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-04-08 11:57 -0400 (Wed, 08 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4897 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1006/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.16.1 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.16.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz |
| StartedAt: 2026-04-08 00:26:01 -0400 (Wed, 08 Apr 2026) |
| EndedAt: 2026-04-08 00:41:07 -0400 (Wed, 08 Apr 2026) |
| EllapsedTime: 906.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.16.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 34.855 0.515 35.397
FSmethod 33.908 0.542 34.450
var_imp 33.606 0.555 34.162
pred_ensembel 12.758 0.084 11.589
enrichfindP 0.569 0.033 9.822
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.16.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 100.180357
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 104.805336
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 94.707298
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.902815
final value 93.836066
converged
Fitting Repeat 5
# weights: 103
initial value 101.488462
final value 94.011429
converged
Fitting Repeat 1
# weights: 305
initial value 99.105838
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 103.657787
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 100.743465
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 95.105179
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 110.845919
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 102.067322
iter 10 value 93.206256
iter 20 value 90.091410
iter 30 value 90.051215
iter 40 value 90.003399
iter 50 value 89.965730
final value 89.963089
converged
Fitting Repeat 2
# weights: 507
initial value 99.556749
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 98.863978
iter 10 value 91.034530
iter 20 value 88.171391
iter 30 value 88.094468
iter 40 value 88.042756
final value 88.042754
converged
Fitting Repeat 4
# weights: 507
initial value 97.474778
iter 10 value 93.507822
final value 93.478227
converged
Fitting Repeat 5
# weights: 507
initial value 122.506463
iter 10 value 93.836699
final value 93.836066
converged
Fitting Repeat 1
# weights: 103
initial value 96.564049
iter 10 value 94.053740
iter 20 value 92.367267
iter 30 value 90.369526
iter 40 value 88.206209
iter 50 value 87.904840
iter 60 value 87.500801
iter 70 value 87.232816
iter 80 value 87.124434
iter 90 value 87.071052
iter 100 value 86.851613
final value 86.851613
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.835974
iter 10 value 94.056592
iter 20 value 91.711377
iter 30 value 91.075347
iter 40 value 90.851960
iter 50 value 90.389373
iter 60 value 87.079568
iter 70 value 86.617590
iter 80 value 86.085756
iter 90 value 85.953535
iter 100 value 85.623532
final value 85.623532
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.045309
iter 10 value 94.055351
iter 20 value 88.614597
iter 30 value 88.408020
iter 40 value 87.765595
iter 50 value 87.143384
iter 60 value 87.083277
final value 87.083260
converged
Fitting Repeat 4
# weights: 103
initial value 96.364632
iter 10 value 94.057514
iter 20 value 93.979742
iter 30 value 93.167952
iter 40 value 93.094910
iter 50 value 91.909094
iter 60 value 91.899151
final value 91.899117
converged
Fitting Repeat 5
# weights: 103
initial value 97.510473
iter 10 value 93.894736
iter 20 value 88.083391
iter 30 value 86.671258
iter 40 value 85.983759
iter 50 value 85.572451
iter 60 value 85.317541
iter 70 value 85.089313
iter 80 value 85.054168
iter 90 value 85.041954
iter 100 value 85.023988
final value 85.023988
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 107.343917
iter 10 value 94.056473
iter 20 value 93.195782
iter 30 value 87.901874
iter 40 value 87.351185
iter 50 value 86.863763
iter 60 value 86.198494
iter 70 value 84.775967
iter 80 value 83.883753
iter 90 value 83.682674
iter 100 value 83.494626
final value 83.494626
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.086050
iter 10 value 94.176503
iter 20 value 93.858043
iter 30 value 93.555357
iter 40 value 92.845239
iter 50 value 89.183124
iter 60 value 87.349476
iter 70 value 86.401480
iter 80 value 85.989437
iter 90 value 85.562374
iter 100 value 85.200207
final value 85.200207
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.848679
iter 10 value 94.054265
iter 20 value 93.831887
iter 30 value 92.841644
iter 40 value 87.465673
iter 50 value 86.276927
iter 60 value 85.488747
iter 70 value 85.346335
iter 80 value 85.024083
iter 90 value 84.938240
iter 100 value 84.602669
final value 84.602669
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 132.637161
iter 10 value 93.904198
iter 20 value 93.787078
iter 30 value 92.626819
iter 40 value 92.356504
iter 50 value 92.268131
iter 60 value 91.943485
iter 70 value 87.836943
iter 80 value 87.551636
iter 90 value 86.942464
iter 100 value 85.394944
final value 85.394944
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.659406
iter 10 value 95.318361
iter 20 value 94.960345
iter 30 value 91.696944
iter 40 value 89.068133
iter 50 value 88.564870
iter 60 value 88.272455
iter 70 value 87.679775
iter 80 value 86.939440
iter 90 value 85.656758
iter 100 value 85.446197
final value 85.446197
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 123.231735
iter 10 value 100.018855
iter 20 value 89.707551
iter 30 value 88.900840
iter 40 value 88.049605
iter 50 value 86.647407
iter 60 value 85.866382
iter 70 value 85.675120
iter 80 value 85.112113
iter 90 value 84.154782
iter 100 value 83.629511
final value 83.629511
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 133.807770
iter 10 value 95.090971
iter 20 value 93.348318
iter 30 value 92.329512
iter 40 value 90.600551
iter 50 value 86.060148
iter 60 value 85.478088
iter 70 value 84.084688
iter 80 value 83.333162
iter 90 value 83.201867
iter 100 value 83.170730
final value 83.170730
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.154484
iter 10 value 94.638768
iter 20 value 91.670945
iter 30 value 88.766631
iter 40 value 88.385962
iter 50 value 87.984211
iter 60 value 85.427921
iter 70 value 84.730747
iter 80 value 84.091828
iter 90 value 83.862417
iter 100 value 83.732738
final value 83.732738
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.220873
iter 10 value 94.050343
iter 20 value 89.719272
iter 30 value 89.469841
iter 40 value 89.239456
iter 50 value 88.078024
iter 60 value 87.724232
iter 70 value 87.600033
iter 80 value 87.469836
iter 90 value 86.680552
iter 100 value 85.299735
final value 85.299735
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.432590
iter 10 value 94.091219
iter 20 value 93.275595
iter 30 value 90.067232
iter 40 value 87.195566
iter 50 value 86.998809
iter 60 value 86.660063
iter 70 value 85.697549
iter 80 value 84.541292
iter 90 value 84.093245
iter 100 value 83.482374
final value 83.482374
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 103.434919
final value 94.054617
converged
Fitting Repeat 2
# weights: 103
initial value 94.320510
final value 94.054619
converged
Fitting Repeat 3
# weights: 103
initial value 94.583537
final value 94.054521
converged
Fitting Repeat 4
# weights: 103
initial value 97.374959
iter 10 value 94.054435
iter 20 value 93.985713
iter 30 value 92.957617
iter 40 value 92.841886
final value 92.841740
converged
Fitting Repeat 5
# weights: 103
initial value 102.939390
iter 10 value 94.054688
iter 20 value 94.052931
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.455611
iter 10 value 93.840657
iter 20 value 93.836847
final value 93.836445
converged
Fitting Repeat 2
# weights: 305
initial value 94.226192
iter 10 value 94.053768
iter 20 value 90.172612
iter 30 value 88.642325
iter 40 value 88.641475
iter 50 value 88.599716
iter 60 value 88.581419
iter 60 value 88.581419
final value 88.581419
converged
Fitting Repeat 3
# weights: 305
initial value 95.713541
iter 10 value 93.841292
iter 20 value 93.836934
iter 30 value 92.277408
iter 40 value 91.586648
iter 50 value 89.468911
iter 60 value 88.976424
iter 70 value 88.972786
iter 80 value 88.972491
iter 90 value 88.349859
iter 100 value 87.602311
final value 87.602311
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.162718
iter 10 value 94.057095
iter 20 value 94.021394
iter 30 value 93.804962
final value 93.804953
converged
Fitting Repeat 5
# weights: 305
initial value 100.723412
iter 10 value 94.057848
iter 20 value 94.052973
iter 20 value 94.052972
iter 20 value 94.052972
final value 94.052972
converged
Fitting Repeat 1
# weights: 507
initial value 96.844258
iter 10 value 94.057923
iter 20 value 93.947113
final value 93.836236
converged
Fitting Repeat 2
# weights: 507
initial value 103.857280
iter 10 value 94.061033
iter 20 value 93.777686
iter 30 value 89.175538
iter 40 value 87.623768
iter 50 value 87.621349
iter 60 value 87.620797
iter 70 value 86.708747
iter 80 value 86.258936
iter 90 value 86.143169
iter 100 value 85.155510
final value 85.155510
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 112.089703
iter 10 value 94.064154
iter 20 value 94.013797
iter 30 value 89.042018
iter 40 value 88.033046
iter 50 value 87.103995
iter 60 value 87.012873
iter 70 value 86.980330
iter 80 value 86.950672
iter 90 value 86.676507
iter 100 value 86.432432
final value 86.432432
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.188067
iter 10 value 94.020308
iter 20 value 94.017084
iter 30 value 92.991061
iter 40 value 90.462267
iter 50 value 88.464019
iter 60 value 86.175742
iter 70 value 85.821895
iter 80 value 84.795400
iter 90 value 82.560107
iter 100 value 82.238475
final value 82.238475
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 101.130480
iter 10 value 93.679158
iter 20 value 88.980346
iter 30 value 87.806851
iter 40 value 87.185846
iter 50 value 87.161762
final value 87.161739
converged
Fitting Repeat 1
# weights: 103
initial value 96.930376
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.783921
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 109.441329
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 104.226776
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.577015
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 115.760723
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 110.383634
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.179230
iter 10 value 94.088482
iter 20 value 92.634917
iter 30 value 92.631434
final value 92.631431
converged
Fitting Repeat 4
# weights: 305
initial value 122.838644
iter 10 value 94.484877
final value 94.483810
converged
Fitting Repeat 5
# weights: 305
initial value 96.273272
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 95.160100
iter 10 value 90.347809
iter 20 value 90.342215
iter 30 value 90.336771
iter 40 value 90.306903
iter 50 value 89.665123
final value 89.663580
converged
Fitting Repeat 2
# weights: 507
initial value 96.798489
iter 10 value 94.275365
final value 94.275362
converged
Fitting Repeat 3
# weights: 507
initial value 94.429894
iter 10 value 94.273924
iter 20 value 94.230017
final value 94.228678
converged
Fitting Repeat 4
# weights: 507
initial value 114.228084
iter 10 value 94.310095
iter 20 value 94.275352
iter 20 value 94.275351
iter 20 value 94.275351
final value 94.275351
converged
Fitting Repeat 5
# weights: 507
initial value 98.842093
iter 10 value 82.961142
iter 20 value 80.076814
iter 30 value 80.009727
final value 79.966561
converged
Fitting Repeat 1
# weights: 103
initial value 98.755926
iter 10 value 93.661285
iter 20 value 82.360631
iter 30 value 81.134352
iter 40 value 80.838337
iter 50 value 80.828078
final value 80.827879
converged
Fitting Repeat 2
# weights: 103
initial value 101.451502
iter 10 value 87.320783
iter 20 value 81.321512
iter 30 value 81.168005
iter 40 value 80.884763
iter 50 value 80.828400
final value 80.827879
converged
Fitting Repeat 3
# weights: 103
initial value 105.186525
iter 10 value 94.484273
iter 20 value 91.960779
iter 30 value 90.296980
iter 40 value 90.026521
iter 50 value 82.110847
iter 60 value 81.888974
iter 70 value 81.639925
iter 80 value 80.997255
iter 90 value 80.528138
iter 100 value 80.510554
final value 80.510554
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.884728
iter 10 value 91.772705
iter 20 value 82.517738
iter 30 value 81.230691
iter 40 value 80.989134
iter 50 value 80.828562
final value 80.827879
converged
Fitting Repeat 5
# weights: 103
initial value 97.416092
iter 10 value 94.492424
iter 20 value 94.366016
iter 30 value 93.778366
iter 40 value 84.417356
iter 50 value 81.315539
iter 60 value 80.859862
iter 70 value 80.827892
final value 80.827879
converged
Fitting Repeat 1
# weights: 305
initial value 101.607855
iter 10 value 94.483482
iter 20 value 89.123218
iter 30 value 86.521812
iter 40 value 86.087067
iter 50 value 82.893513
iter 60 value 81.545864
iter 70 value 80.049328
iter 80 value 78.878911
iter 90 value 78.648767
iter 100 value 78.600840
final value 78.600840
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.948165
iter 10 value 93.245953
iter 20 value 88.355009
iter 30 value 87.582699
iter 40 value 85.782692
iter 50 value 82.310739
iter 60 value 81.349052
iter 70 value 79.788881
iter 80 value 76.950487
iter 90 value 76.303848
iter 100 value 76.255131
final value 76.255131
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.564605
iter 10 value 89.946789
iter 20 value 82.183653
iter 30 value 80.832340
iter 40 value 79.385131
iter 50 value 77.712005
iter 60 value 77.469088
iter 70 value 77.093819
iter 80 value 76.530430
iter 90 value 76.340472
iter 100 value 76.164635
final value 76.164635
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.645229
iter 10 value 94.358123
iter 20 value 83.274184
iter 30 value 82.355280
iter 40 value 81.749184
iter 50 value 79.693605
iter 60 value 78.917802
iter 70 value 78.167743
iter 80 value 77.967490
iter 90 value 77.231858
iter 100 value 76.914438
final value 76.914438
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.073207
iter 10 value 94.535965
iter 20 value 84.983665
iter 30 value 82.144071
iter 40 value 81.164407
iter 50 value 80.437920
iter 60 value 78.776020
iter 70 value 78.202288
iter 80 value 78.022951
iter 90 value 77.909114
iter 100 value 77.867160
final value 77.867160
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 115.314148
iter 10 value 96.501862
iter 20 value 87.291115
iter 30 value 83.470027
iter 40 value 81.970541
iter 50 value 79.665712
iter 60 value 76.784219
iter 70 value 76.095101
iter 80 value 75.823083
iter 90 value 75.679079
iter 100 value 75.567459
final value 75.567459
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.907777
iter 10 value 94.350237
iter 20 value 91.634219
iter 30 value 84.745083
iter 40 value 81.058372
iter 50 value 79.057711
iter 60 value 78.039883
iter 70 value 76.518861
iter 80 value 76.425757
iter 90 value 76.240350
iter 100 value 76.196680
final value 76.196680
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 120.342508
iter 10 value 94.457982
iter 20 value 83.142062
iter 30 value 82.255516
iter 40 value 79.058155
iter 50 value 78.479115
iter 60 value 78.071226
iter 70 value 77.906326
iter 80 value 77.722448
iter 90 value 77.581333
iter 100 value 77.567647
final value 77.567647
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 116.202982
iter 10 value 94.643385
iter 20 value 89.219681
iter 30 value 83.406105
iter 40 value 81.934587
iter 50 value 80.759177
iter 60 value 80.115325
iter 70 value 78.666878
iter 80 value 76.892069
iter 90 value 76.011164
iter 100 value 75.791429
final value 75.791429
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.891504
iter 10 value 97.647886
iter 20 value 89.531506
iter 30 value 87.159904
iter 40 value 82.888562
iter 50 value 77.992549
iter 60 value 77.220641
iter 70 value 76.477035
iter 80 value 76.303971
iter 90 value 76.017102
iter 100 value 75.910813
final value 75.910813
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.434118
final value 94.485925
converged
Fitting Repeat 2
# weights: 103
initial value 97.659250
iter 10 value 94.277145
iter 20 value 94.275455
iter 30 value 84.461660
iter 40 value 83.196591
iter 50 value 83.194906
iter 60 value 83.174970
iter 70 value 83.151183
iter 80 value 83.148097
iter 90 value 83.147025
final value 83.146610
converged
Fitting Repeat 3
# weights: 103
initial value 95.996818
iter 10 value 94.485676
iter 20 value 94.484225
final value 94.275470
converged
Fitting Repeat 4
# weights: 103
initial value 99.792689
final value 94.485605
converged
Fitting Repeat 5
# weights: 103
initial value 100.040474
final value 94.486560
converged
Fitting Repeat 1
# weights: 305
initial value 113.812876
iter 10 value 94.489676
iter 20 value 94.484972
iter 30 value 94.469199
iter 40 value 91.964654
iter 50 value 87.218320
iter 60 value 78.975155
iter 70 value 77.681362
iter 80 value 77.494902
iter 90 value 77.437248
iter 100 value 77.433545
final value 77.433545
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.574317
iter 10 value 94.489655
iter 20 value 94.484330
iter 30 value 88.489127
iter 40 value 82.407335
iter 50 value 77.275047
iter 60 value 76.454898
iter 70 value 76.161438
iter 80 value 76.153626
iter 90 value 76.153533
iter 100 value 76.153250
final value 76.153250
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 107.172857
iter 10 value 94.489322
iter 20 value 94.421112
iter 30 value 91.473945
iter 40 value 90.276364
iter 50 value 90.235631
iter 60 value 82.123258
iter 70 value 77.670355
iter 80 value 77.639724
iter 90 value 77.635622
iter 100 value 77.590920
final value 77.590920
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.936373
iter 10 value 94.489436
iter 20 value 94.448270
iter 30 value 94.243188
final value 94.229111
converged
Fitting Repeat 5
# weights: 305
initial value 102.220773
iter 10 value 94.281001
iter 20 value 93.614281
iter 30 value 86.626244
iter 30 value 86.626243
iter 30 value 86.626243
final value 86.626243
converged
Fitting Repeat 1
# weights: 507
initial value 98.098716
iter 10 value 94.283615
iter 20 value 94.277615
iter 30 value 94.275717
iter 30 value 94.275717
iter 30 value 94.275717
final value 94.275717
converged
Fitting Repeat 2
# weights: 507
initial value 103.155353
iter 10 value 94.470649
iter 20 value 94.443243
iter 30 value 84.990040
iter 40 value 84.601719
iter 50 value 84.554166
iter 60 value 77.838229
iter 70 value 77.033726
iter 80 value 76.730046
iter 90 value 76.652041
iter 100 value 76.528681
final value 76.528681
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 95.135841
iter 10 value 90.527892
iter 20 value 84.334966
iter 30 value 84.329548
iter 40 value 84.225445
iter 50 value 81.968307
iter 60 value 80.072569
iter 70 value 79.810644
iter 80 value 79.623027
iter 90 value 79.622295
iter 100 value 79.621747
final value 79.621747
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 108.092219
iter 10 value 94.492107
iter 20 value 94.428854
iter 30 value 91.189617
iter 40 value 81.322140
iter 50 value 81.008863
iter 60 value 80.976342
iter 70 value 80.924895
iter 80 value 80.917578
iter 90 value 80.876912
iter 100 value 80.805524
final value 80.805524
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.399545
iter 10 value 92.795095
iter 20 value 92.791360
iter 30 value 92.787119
iter 40 value 92.408578
iter 50 value 83.749900
iter 60 value 83.727479
final value 83.727462
converged
Fitting Repeat 1
# weights: 103
initial value 107.486977
final value 94.354396
converged
Fitting Repeat 2
# weights: 103
initial value 100.873127
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.929241
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 104.013913
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 109.441329
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 95.557856
iter 10 value 93.270649
iter 20 value 93.258413
final value 93.258385
converged
Fitting Repeat 2
# weights: 305
initial value 103.449382
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 96.895983
iter 10 value 92.633876
iter 20 value 92.631439
final value 92.631429
converged
Fitting Repeat 4
# weights: 305
initial value 98.171187
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 95.782789
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 109.637089
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 121.646403
final value 94.354396
converged
Fitting Repeat 3
# weights: 507
initial value 97.825796
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 118.895469
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 130.272277
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.077765
iter 10 value 94.451968
iter 20 value 87.994793
iter 30 value 85.789641
iter 40 value 85.698342
iter 50 value 85.625722
iter 60 value 85.307111
iter 70 value 85.220979
final value 85.220704
converged
Fitting Repeat 2
# weights: 103
initial value 100.864591
iter 10 value 94.488889
iter 20 value 92.812954
iter 30 value 84.984562
iter 40 value 84.488799
iter 50 value 84.099813
iter 60 value 83.571280
iter 70 value 83.004853
final value 83.002660
converged
Fitting Repeat 3
# weights: 103
initial value 99.888572
iter 10 value 93.614062
iter 20 value 86.435231
iter 30 value 85.248878
iter 40 value 84.364001
iter 50 value 84.103407
iter 60 value 81.762955
iter 70 value 81.460306
iter 80 value 81.253095
final value 81.250597
converged
Fitting Repeat 4
# weights: 103
initial value 100.063776
iter 10 value 94.495364
iter 20 value 94.487454
iter 30 value 94.384840
iter 40 value 94.382566
iter 50 value 93.857319
iter 60 value 93.587394
iter 70 value 93.224283
iter 80 value 91.715756
iter 90 value 86.865737
iter 100 value 82.648319
final value 82.648319
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.390246
iter 10 value 94.488438
iter 20 value 89.622584
iter 30 value 87.607622
iter 40 value 87.286232
iter 50 value 85.366588
iter 60 value 85.222789
iter 70 value 85.220993
final value 85.220704
converged
Fitting Repeat 1
# weights: 305
initial value 109.793383
iter 10 value 94.078719
iter 20 value 85.605723
iter 30 value 85.222701
iter 40 value 83.091287
iter 50 value 81.274448
iter 60 value 80.322510
iter 70 value 79.892279
iter 80 value 79.823330
iter 90 value 79.771836
iter 100 value 79.752916
final value 79.752916
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.870450
iter 10 value 94.493274
iter 20 value 92.442577
iter 30 value 84.710187
iter 40 value 83.890246
iter 50 value 82.372163
iter 60 value 80.361921
iter 70 value 79.980556
iter 80 value 79.792411
iter 90 value 79.741749
iter 100 value 79.638955
final value 79.638955
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.892293
iter 10 value 94.389228
iter 20 value 93.399172
iter 30 value 90.590078
iter 40 value 88.389924
iter 50 value 88.027778
iter 60 value 86.776728
iter 70 value 84.374283
iter 80 value 81.541438
iter 90 value 80.062786
iter 100 value 79.745085
final value 79.745085
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.348277
iter 10 value 94.504522
iter 20 value 93.991475
iter 30 value 89.613107
iter 40 value 83.622768
iter 50 value 82.051849
iter 60 value 80.458423
iter 70 value 80.152074
iter 80 value 79.962309
iter 90 value 79.885607
iter 100 value 79.706799
final value 79.706799
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.689087
iter 10 value 94.512195
iter 20 value 93.524111
iter 30 value 93.493902
iter 40 value 93.472104
iter 50 value 92.312623
iter 60 value 88.201305
iter 70 value 86.004317
iter 80 value 84.555581
iter 90 value 83.959605
iter 100 value 83.733046
final value 83.733046
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.317558
iter 10 value 94.792887
iter 20 value 94.668276
iter 30 value 94.573557
iter 40 value 93.566972
iter 50 value 89.847143
iter 60 value 86.365538
iter 70 value 83.895789
iter 80 value 82.153778
iter 90 value 81.645968
iter 100 value 81.350463
final value 81.350463
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.201437
iter 10 value 97.627595
iter 20 value 86.357039
iter 30 value 82.199725
iter 40 value 81.422678
iter 50 value 80.224266
iter 60 value 80.074186
iter 70 value 79.963743
iter 80 value 79.850517
iter 90 value 79.720113
iter 100 value 79.400117
final value 79.400117
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.944207
iter 10 value 94.701351
iter 20 value 94.547704
iter 30 value 87.247770
iter 40 value 87.159766
iter 50 value 85.081129
iter 60 value 82.423030
iter 70 value 81.562318
iter 80 value 80.575705
iter 90 value 80.163532
iter 100 value 79.811669
final value 79.811669
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.904608
iter 10 value 97.476312
iter 20 value 93.367978
iter 30 value 86.082018
iter 40 value 85.485450
iter 50 value 83.492158
iter 60 value 82.438659
iter 70 value 81.648970
iter 80 value 80.597698
iter 90 value 80.223896
iter 100 value 80.100090
final value 80.100090
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.563987
iter 10 value 99.065890
iter 20 value 94.432072
iter 30 value 85.980721
iter 40 value 84.259810
iter 50 value 82.375266
iter 60 value 81.857550
iter 70 value 81.627018
iter 80 value 80.969699
iter 90 value 80.592210
iter 100 value 79.951401
final value 79.951401
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.141749
final value 94.486196
converged
Fitting Repeat 2
# weights: 103
initial value 97.876299
iter 10 value 94.486064
final value 94.484350
converged
Fitting Repeat 3
# weights: 103
initial value 99.862041
final value 94.356001
converged
Fitting Repeat 4
# weights: 103
initial value 102.710485
final value 94.485887
converged
Fitting Repeat 5
# weights: 103
initial value 96.677218
iter 10 value 84.717181
iter 20 value 84.637311
iter 30 value 84.635841
final value 84.635830
converged
Fitting Repeat 1
# weights: 305
initial value 95.939877
iter 10 value 94.325706
iter 20 value 92.943007
iter 30 value 88.217090
iter 40 value 88.130724
iter 50 value 88.128285
iter 60 value 88.020306
iter 70 value 87.439629
iter 80 value 87.389724
final value 87.389707
converged
Fitting Repeat 2
# weights: 305
initial value 111.532612
iter 10 value 94.359550
iter 20 value 94.354792
final value 94.354503
converged
Fitting Repeat 3
# weights: 305
initial value 112.675303
iter 10 value 94.489045
iter 20 value 94.431539
iter 30 value 93.324889
final value 93.320988
converged
Fitting Repeat 4
# weights: 305
initial value 97.391749
iter 10 value 94.358896
iter 20 value 94.355039
final value 94.354517
converged
Fitting Repeat 5
# weights: 305
initial value 94.768554
iter 10 value 92.728268
iter 20 value 85.016081
iter 30 value 84.385176
iter 40 value 83.924576
iter 50 value 83.907951
iter 60 value 83.903289
iter 70 value 83.898143
iter 80 value 83.824194
iter 90 value 83.743088
iter 100 value 83.631901
final value 83.631901
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 102.087572
iter 10 value 94.493213
iter 20 value 93.079421
iter 30 value 88.481985
iter 40 value 88.365929
iter 50 value 87.980196
iter 60 value 83.587137
iter 70 value 83.548854
final value 83.548493
converged
Fitting Repeat 2
# weights: 507
initial value 97.719710
iter 10 value 94.491508
iter 20 value 93.843358
iter 30 value 93.320638
iter 40 value 84.964379
iter 50 value 83.232825
iter 60 value 81.330793
iter 70 value 81.298531
iter 80 value 81.283082
iter 90 value 81.210740
iter 100 value 81.151488
final value 81.151488
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.167923
iter 10 value 92.008508
iter 20 value 86.949471
iter 30 value 86.948298
iter 40 value 85.592492
iter 50 value 81.814452
iter 60 value 79.392778
iter 70 value 78.443629
iter 80 value 78.081020
iter 90 value 78.047262
iter 100 value 78.046924
final value 78.046924
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 118.043816
iter 10 value 93.168533
iter 20 value 92.586828
iter 30 value 92.582129
iter 40 value 92.579563
iter 50 value 92.579202
iter 60 value 92.578733
final value 92.578673
converged
Fitting Repeat 5
# weights: 507
initial value 110.846263
iter 10 value 94.492530
iter 20 value 94.484515
iter 30 value 93.060618
iter 40 value 83.927063
iter 50 value 83.918530
iter 60 value 83.915693
iter 70 value 83.915037
iter 80 value 83.559638
iter 90 value 83.528709
final value 83.528546
converged
Fitting Repeat 1
# weights: 103
initial value 101.733915
iter 10 value 88.818483
iter 20 value 85.190671
iter 30 value 85.132746
iter 40 value 85.131041
final value 85.131033
converged
Fitting Repeat 2
# weights: 103
initial value 93.857490
iter 10 value 88.022307
iter 20 value 84.897530
final value 84.488790
converged
Fitting Repeat 3
# weights: 103
initial value 98.081992
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.171188
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.948940
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 99.702296
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 101.899139
iter 10 value 93.631111
iter 20 value 93.629653
final value 93.629627
converged
Fitting Repeat 3
# weights: 305
initial value 94.252622
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 115.227146
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 101.554360
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 97.106875
final value 93.836066
converged
Fitting Repeat 2
# weights: 507
initial value 96.932562
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 100.866485
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 96.344194
iter 10 value 84.468177
iter 20 value 83.231365
iter 30 value 82.965371
iter 40 value 82.530739
iter 50 value 82.400367
iter 60 value 82.397824
iter 70 value 82.397651
final value 82.397630
converged
Fitting Repeat 5
# weights: 507
initial value 103.474625
final value 93.818713
converged
Fitting Repeat 1
# weights: 103
initial value 101.803006
iter 10 value 93.731883
iter 20 value 93.619152
iter 30 value 92.131577
iter 40 value 87.754584
iter 50 value 87.288326
iter 60 value 87.057246
iter 70 value 83.162690
iter 80 value 82.951960
iter 90 value 82.895735
iter 100 value 82.859150
final value 82.859150
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 100.477813
iter 10 value 94.265489
iter 20 value 94.052523
iter 30 value 93.806157
iter 40 value 93.689392
iter 50 value 91.967352
iter 60 value 84.980897
iter 70 value 83.766911
iter 80 value 83.515000
iter 90 value 83.181598
iter 100 value 82.260800
final value 82.260800
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 102.190537
iter 10 value 94.049188
iter 20 value 93.927085
iter 30 value 93.629055
iter 40 value 90.325163
iter 50 value 87.557506
iter 60 value 84.865123
iter 70 value 83.775371
iter 80 value 83.488052
iter 90 value 83.408589
iter 100 value 83.332244
final value 83.332244
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 105.926499
iter 10 value 93.649237
iter 20 value 84.821766
iter 30 value 84.508252
iter 40 value 84.450739
iter 50 value 84.448386
iter 60 value 84.429630
iter 70 value 84.164965
iter 80 value 82.522997
iter 90 value 82.414893
final value 82.413993
converged
Fitting Repeat 5
# weights: 103
initial value 104.200689
iter 10 value 94.055796
iter 20 value 92.913951
iter 30 value 91.953764
iter 40 value 89.569149
iter 50 value 87.296922
iter 60 value 85.154760
iter 70 value 84.217357
iter 80 value 84.136675
iter 90 value 83.322917
final value 83.322340
converged
Fitting Repeat 1
# weights: 305
initial value 100.799020
iter 10 value 91.688903
iter 20 value 85.209381
iter 30 value 84.952338
iter 40 value 84.053488
iter 50 value 81.374842
iter 60 value 80.954466
iter 70 value 80.369270
iter 80 value 80.175306
iter 90 value 80.041536
iter 100 value 79.795306
final value 79.795306
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.153634
iter 10 value 94.057678
iter 20 value 93.695426
iter 30 value 90.230809
iter 40 value 84.138432
iter 50 value 83.927524
iter 60 value 83.384282
iter 70 value 83.317450
iter 80 value 83.289052
iter 90 value 83.126330
iter 100 value 82.205372
final value 82.205372
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 132.197042
iter 10 value 93.567537
iter 20 value 89.046017
iter 30 value 85.122302
iter 40 value 83.354373
iter 50 value 81.862597
iter 60 value 81.531922
iter 70 value 81.292394
iter 80 value 81.091145
iter 90 value 80.368317
iter 100 value 80.068885
final value 80.068885
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 109.183249
iter 10 value 93.987101
iter 20 value 90.278227
iter 30 value 86.902633
iter 40 value 86.564981
iter 50 value 82.541515
iter 60 value 81.044961
iter 70 value 79.928439
iter 80 value 79.570488
iter 90 value 79.487969
iter 100 value 79.264587
final value 79.264587
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.776927
iter 10 value 94.029733
iter 20 value 89.735637
iter 30 value 83.577535
iter 40 value 82.161647
iter 50 value 81.417640
iter 60 value 81.065033
iter 70 value 80.392776
iter 80 value 80.149023
iter 90 value 80.046979
iter 100 value 79.889881
final value 79.889881
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 115.158119
iter 10 value 94.094865
iter 20 value 93.809955
iter 30 value 84.401854
iter 40 value 83.255351
iter 50 value 83.077837
iter 60 value 82.794949
iter 70 value 81.582143
iter 80 value 80.403637
iter 90 value 80.018324
iter 100 value 79.650781
final value 79.650781
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 117.457609
iter 10 value 94.154150
iter 20 value 88.049918
iter 30 value 86.736366
iter 40 value 81.042800
iter 50 value 80.604796
iter 60 value 79.802990
iter 70 value 79.583571
iter 80 value 79.469745
iter 90 value 79.395965
iter 100 value 79.295136
final value 79.295136
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.682840
iter 10 value 95.721371
iter 20 value 93.667487
iter 30 value 93.537529
iter 40 value 88.928273
iter 50 value 83.357183
iter 60 value 82.875919
iter 70 value 82.547420
iter 80 value 80.875933
iter 90 value 80.085723
iter 100 value 79.473772
final value 79.473772
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 114.412254
iter 10 value 94.072487
iter 20 value 93.689201
iter 30 value 90.053098
iter 40 value 86.813112
iter 50 value 84.651172
iter 60 value 83.234984
iter 70 value 80.849314
iter 80 value 79.476180
iter 90 value 79.293718
iter 100 value 79.211299
final value 79.211299
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.908974
iter 10 value 94.376893
iter 20 value 85.927993
iter 30 value 84.525837
iter 40 value 83.602856
iter 50 value 83.065124
iter 60 value 81.962198
iter 70 value 80.270962
iter 80 value 80.042534
iter 90 value 79.671647
iter 100 value 79.319925
final value 79.319925
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.433480
final value 94.054388
converged
Fitting Repeat 2
# weights: 103
initial value 102.366238
final value 94.054570
converged
Fitting Repeat 3
# weights: 103
initial value 97.701725
final value 94.054690
converged
Fitting Repeat 4
# weights: 103
initial value 100.436609
iter 10 value 94.056164
final value 94.054188
converged
Fitting Repeat 5
# weights: 103
initial value 99.037163
final value 94.054561
converged
Fitting Repeat 1
# weights: 305
initial value 103.923146
iter 10 value 93.853806
iter 20 value 93.841115
iter 30 value 93.837304
final value 93.836432
converged
Fitting Repeat 2
# weights: 305
initial value 100.716843
iter 10 value 94.057113
iter 20 value 94.050581
iter 30 value 86.560872
iter 40 value 82.915792
iter 50 value 82.915254
iter 60 value 82.648001
iter 70 value 82.350369
final value 82.350129
converged
Fitting Repeat 3
# weights: 305
initial value 99.357460
iter 10 value 89.974035
iter 20 value 86.987326
iter 30 value 86.978484
iter 40 value 86.788510
iter 50 value 86.675012
iter 60 value 85.965139
iter 70 value 85.936600
iter 80 value 85.927074
iter 90 value 85.921499
iter 100 value 85.920963
final value 85.920963
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 94.196976
iter 10 value 94.057713
iter 20 value 93.605368
iter 30 value 93.601953
iter 40 value 93.593148
iter 50 value 85.698766
iter 60 value 85.601218
iter 70 value 85.591986
iter 80 value 85.559887
iter 90 value 85.550828
final value 85.549797
converged
Fitting Repeat 5
# weights: 305
initial value 111.071456
iter 10 value 93.841845
iter 20 value 93.837443
iter 30 value 91.177287
iter 40 value 83.669523
iter 50 value 80.788127
iter 60 value 79.175893
iter 70 value 78.220377
iter 80 value 78.083685
iter 90 value 78.074677
iter 100 value 77.844146
final value 77.844146
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.458920
iter 10 value 94.060208
iter 20 value 93.818275
iter 30 value 83.914390
final value 83.911934
converged
Fitting Repeat 2
# weights: 507
initial value 100.099441
iter 10 value 85.773214
iter 20 value 84.289204
iter 30 value 84.284659
iter 40 value 84.281409
iter 50 value 84.069390
iter 60 value 83.808820
iter 70 value 83.806544
iter 80 value 83.636673
iter 90 value 81.848316
iter 100 value 78.604722
final value 78.604722
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 101.091169
iter 10 value 94.061420
iter 20 value 94.014700
iter 30 value 88.208086
iter 40 value 88.159972
iter 50 value 88.109952
iter 60 value 88.106040
iter 70 value 88.068080
iter 80 value 82.697741
iter 90 value 81.631737
iter 100 value 81.573190
final value 81.573190
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.882518
iter 10 value 94.061270
iter 20 value 94.052563
iter 30 value 83.913407
final value 83.911298
converged
Fitting Repeat 5
# weights: 507
initial value 107.051402
iter 10 value 93.771599
iter 20 value 93.610334
iter 30 value 93.581524
iter 40 value 93.578215
iter 50 value 93.537504
iter 60 value 93.522627
iter 70 value 93.362031
iter 80 value 82.853834
iter 90 value 81.368483
iter 100 value 81.130780
final value 81.130780
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.448798
iter 10 value 87.605298
iter 20 value 85.787265
final value 85.769539
converged
Fitting Repeat 2
# weights: 103
initial value 102.727987
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 104.002378
final value 94.470285
converged
Fitting Repeat 4
# weights: 103
initial value 101.155140
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 99.655347
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 105.899729
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 95.296105
iter 10 value 94.467349
final value 94.443190
converged
Fitting Repeat 3
# weights: 305
initial value 102.475597
iter 10 value 94.454588
iter 20 value 94.450858
final value 94.450827
converged
Fitting Repeat 4
# weights: 305
initial value 94.850823
iter 10 value 83.209681
iter 20 value 81.613640
iter 30 value 81.610863
final value 81.610860
converged
Fitting Repeat 5
# weights: 305
initial value 99.128078
iter 10 value 83.930365
iter 20 value 83.592845
iter 30 value 83.588976
final value 83.587879
converged
Fitting Repeat 1
# weights: 507
initial value 103.380998
iter 10 value 94.455556
final value 94.455163
converged
Fitting Repeat 2
# weights: 507
initial value 101.737220
final value 94.467389
converged
Fitting Repeat 3
# weights: 507
initial value 102.299295
iter 10 value 94.480520
iter 10 value 94.480520
iter 10 value 94.480520
final value 94.480520
converged
Fitting Repeat 4
# weights: 507
initial value 98.954542
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 94.951612
iter 10 value 94.467391
iter 10 value 94.467391
iter 10 value 94.467391
final value 94.467391
converged
Fitting Repeat 1
# weights: 103
initial value 97.219954
iter 10 value 94.568697
iter 20 value 94.450626
iter 30 value 91.491082
iter 40 value 86.907396
iter 50 value 83.856893
iter 60 value 82.902775
iter 70 value 82.410470
iter 80 value 82.170302
iter 90 value 82.052621
iter 100 value 81.943873
final value 81.943873
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 105.438358
iter 10 value 93.274813
iter 20 value 88.154836
iter 30 value 85.440432
iter 40 value 84.966128
iter 50 value 84.875551
iter 60 value 84.824855
iter 70 value 84.818820
iter 80 value 82.169601
iter 90 value 81.949323
iter 100 value 81.934681
final value 81.934681
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 111.004985
iter 10 value 94.486375
iter 20 value 92.736458
iter 30 value 87.830429
iter 40 value 86.199059
iter 50 value 82.891853
iter 60 value 82.460050
iter 70 value 82.172512
iter 80 value 82.012548
iter 90 value 81.713025
iter 100 value 81.619769
final value 81.619769
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.771297
iter 10 value 94.504114
iter 20 value 94.465665
iter 30 value 88.960124
iter 40 value 85.005051
iter 50 value 84.587755
iter 60 value 84.421878
iter 70 value 82.275114
iter 80 value 81.987447
iter 90 value 81.545853
iter 100 value 81.194413
final value 81.194413
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.401020
iter 10 value 94.510119
iter 20 value 94.484487
iter 30 value 87.622047
iter 40 value 86.423819
iter 50 value 84.575340
iter 60 value 84.305040
iter 70 value 84.236496
iter 80 value 84.226508
iter 90 value 84.222237
iter 100 value 82.943431
final value 82.943431
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 99.270595
iter 10 value 94.586322
iter 20 value 90.351126
iter 30 value 83.689447
iter 40 value 83.278334
iter 50 value 82.232265
iter 60 value 82.061796
iter 70 value 81.847503
iter 80 value 81.679246
iter 90 value 81.556773
iter 100 value 81.542590
final value 81.542590
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.127100
iter 10 value 95.023652
iter 20 value 89.094941
iter 30 value 84.138812
iter 40 value 83.431038
iter 50 value 82.997190
iter 60 value 81.633772
iter 70 value 80.595443
iter 80 value 80.044512
iter 90 value 79.763536
iter 100 value 79.646222
final value 79.646222
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.478169
iter 10 value 95.526049
iter 20 value 85.934491
iter 30 value 84.891249
iter 40 value 84.447138
iter 50 value 84.260063
iter 60 value 83.583840
iter 70 value 82.592697
iter 80 value 82.324545
iter 90 value 81.421036
iter 100 value 80.983767
final value 80.983767
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.719150
iter 10 value 97.893189
iter 20 value 90.883750
iter 30 value 88.830463
iter 40 value 86.452988
iter 50 value 85.802049
iter 60 value 84.307012
iter 70 value 84.210291
iter 80 value 83.817631
iter 90 value 83.198666
iter 100 value 81.064802
final value 81.064802
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.724457
iter 10 value 94.304053
iter 20 value 88.967733
iter 30 value 86.901289
iter 40 value 81.349315
iter 50 value 80.513392
iter 60 value 80.316542
iter 70 value 80.131611
iter 80 value 80.098669
iter 90 value 80.089257
iter 100 value 80.058209
final value 80.058209
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.466775
iter 10 value 94.533582
iter 20 value 88.415708
iter 30 value 87.479396
iter 40 value 86.874241
iter 50 value 84.196553
iter 60 value 83.372085
iter 70 value 82.839705
iter 80 value 81.289892
iter 90 value 80.862120
iter 100 value 80.293310
final value 80.293310
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 111.493338
iter 10 value 94.324360
iter 20 value 87.430926
iter 30 value 86.118597
iter 40 value 84.689428
iter 50 value 82.521574
iter 60 value 82.357809
iter 70 value 81.694246
iter 80 value 80.691453
iter 90 value 80.078143
iter 100 value 79.510405
final value 79.510405
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.108677
iter 10 value 92.195191
iter 20 value 84.330229
iter 30 value 83.358678
iter 40 value 83.075143
iter 50 value 82.412707
iter 60 value 81.630646
iter 70 value 81.292303
iter 80 value 80.959401
iter 90 value 80.731004
iter 100 value 80.044861
final value 80.044861
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.644336
iter 10 value 93.763815
iter 20 value 87.846524
iter 30 value 87.015216
iter 40 value 81.263653
iter 50 value 80.652728
iter 60 value 79.935989
iter 70 value 79.872121
iter 80 value 79.780464
iter 90 value 79.610720
iter 100 value 79.348856
final value 79.348856
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.875936
iter 10 value 94.584240
iter 20 value 93.148664
iter 30 value 89.061703
iter 40 value 87.724005
iter 50 value 84.742963
iter 60 value 82.936808
iter 70 value 82.464304
iter 80 value 81.770700
iter 90 value 81.179051
iter 100 value 80.396467
final value 80.396467
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.874424
final value 94.485656
converged
Fitting Repeat 2
# weights: 103
initial value 97.834966
final value 94.485733
converged
Fitting Repeat 3
# weights: 103
initial value 97.930710
final value 94.485812
converged
Fitting Repeat 4
# weights: 103
initial value 100.915151
iter 10 value 94.485857
iter 20 value 94.484271
iter 30 value 92.765111
iter 40 value 90.347049
iter 50 value 90.346073
iter 60 value 85.850253
iter 70 value 85.847447
iter 80 value 85.763075
iter 90 value 85.697909
final value 85.697467
converged
Fitting Repeat 5
# weights: 103
initial value 111.374670
final value 94.485711
converged
Fitting Repeat 1
# weights: 305
initial value 95.173456
iter 10 value 94.472621
iter 20 value 93.842200
iter 30 value 87.604206
iter 40 value 86.827790
iter 50 value 86.369293
iter 60 value 86.100366
iter 70 value 86.098986
iter 80 value 85.411877
iter 90 value 84.952108
iter 100 value 84.951973
final value 84.951973
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.492012
iter 10 value 94.481605
iter 20 value 94.472276
iter 30 value 94.467548
iter 40 value 90.604010
iter 50 value 85.524432
iter 60 value 85.400759
final value 85.400363
converged
Fitting Repeat 3
# weights: 305
initial value 98.479711
iter 10 value 94.472432
iter 20 value 94.441757
iter 30 value 94.145736
iter 40 value 94.129630
iter 50 value 94.091874
iter 60 value 94.053846
final value 94.053677
converged
Fitting Repeat 4
# weights: 305
initial value 111.602751
iter 10 value 94.489067
iter 20 value 94.482543
iter 30 value 94.127117
iter 40 value 86.640986
final value 86.640473
converged
Fitting Repeat 5
# weights: 305
initial value 95.090531
iter 10 value 94.485359
iter 20 value 94.434391
iter 30 value 94.429232
iter 40 value 94.390162
iter 50 value 82.994162
iter 60 value 80.899636
iter 70 value 80.093816
iter 80 value 79.774942
iter 90 value 79.485854
iter 100 value 79.401288
final value 79.401288
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 114.228790
iter 10 value 94.436995
iter 20 value 94.428967
iter 30 value 87.197072
iter 40 value 86.314026
iter 50 value 86.210001
final value 86.201139
converged
Fitting Repeat 2
# weights: 507
initial value 95.289907
iter 10 value 92.841807
iter 20 value 92.810122
iter 30 value 92.807741
iter 40 value 92.561479
iter 50 value 92.540343
final value 92.540256
converged
Fitting Repeat 3
# weights: 507
initial value 123.001099
iter 10 value 94.492792
iter 20 value 94.485060
iter 30 value 94.355179
iter 40 value 83.759007
iter 50 value 83.600955
iter 60 value 83.275473
iter 70 value 81.001571
iter 80 value 80.101663
iter 90 value 79.987810
iter 100 value 79.250668
final value 79.250668
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 103.632212
iter 10 value 94.492176
iter 20 value 94.484143
iter 30 value 87.035451
iter 40 value 84.525348
iter 50 value 84.454918
iter 60 value 83.475741
iter 70 value 82.199322
iter 80 value 80.803501
iter 90 value 77.854057
iter 100 value 77.475496
final value 77.475496
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.582499
iter 10 value 83.803656
iter 20 value 83.746028
iter 30 value 83.736761
iter 40 value 83.735789
iter 50 value 83.735177
final value 83.735153
converged
Fitting Repeat 1
# weights: 507
initial value 144.288814
iter 10 value 118.380195
iter 20 value 115.446222
iter 30 value 108.158518
iter 40 value 107.908679
iter 50 value 106.218097
iter 60 value 103.431086
iter 70 value 102.191707
iter 80 value 101.647903
iter 90 value 101.359854
iter 100 value 100.905808
final value 100.905808
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 137.396301
iter 10 value 118.103619
iter 20 value 108.813071
iter 30 value 107.578083
iter 40 value 106.808711
iter 50 value 105.458993
iter 60 value 102.408189
iter 70 value 101.611153
iter 80 value 101.318436
iter 90 value 101.242282
iter 100 value 101.148731
final value 101.148731
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.046915
iter 10 value 118.030885
iter 20 value 117.180734
iter 30 value 107.728085
iter 40 value 105.887509
iter 50 value 105.055455
iter 60 value 103.353677
iter 70 value 102.392568
iter 80 value 102.207754
iter 90 value 102.184465
iter 100 value 102.017743
final value 102.017743
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 133.324053
iter 10 value 118.557502
iter 20 value 105.470680
iter 30 value 104.911883
iter 40 value 103.798337
iter 50 value 103.105902
iter 60 value 101.862060
iter 70 value 101.375465
iter 80 value 100.863692
iter 90 value 100.492139
iter 100 value 100.416739
final value 100.416739
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 130.328839
iter 10 value 117.828413
iter 20 value 113.086327
iter 30 value 108.459198
iter 40 value 104.275312
iter 50 value 103.160372
iter 60 value 102.742791
iter 70 value 102.292063
iter 80 value 102.045844
iter 90 value 101.960279
iter 100 value 101.677530
final value 101.677530
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Apr 8 00:31:24 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.559 0.795 95.956
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.908 | 0.542 | 34.450 | |
| FreqInteractors | 0.449 | 0.034 | 0.483 | |
| calculateAAC | 0.032 | 0.000 | 0.032 | |
| calculateAutocor | 0.275 | 0.023 | 0.298 | |
| calculateCTDC | 0.076 | 0.000 | 0.076 | |
| calculateCTDD | 0.548 | 0.002 | 0.550 | |
| calculateCTDT | 0.185 | 0.000 | 0.185 | |
| calculateCTriad | 0.390 | 0.005 | 0.396 | |
| calculateDC | 0.084 | 0.000 | 0.084 | |
| calculateF | 0.304 | 0.000 | 0.304 | |
| calculateKSAAP | 0.105 | 0.001 | 0.107 | |
| calculateQD_Sm | 1.926 | 0.007 | 1.933 | |
| calculateTC | 1.551 | 0.028 | 1.580 | |
| calculateTC_Sm | 0.267 | 0.001 | 0.267 | |
| corr_plot | 34.855 | 0.515 | 35.397 | |
| enrichfindP | 0.569 | 0.033 | 9.822 | |
| enrichfind_hp | 0.061 | 0.001 | 1.925 | |
| enrichplot | 0.547 | 0.001 | 0.548 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.449 | 0.042 | 4.240 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.001 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.002 | |
| plotPPI | 0.081 | 0.001 | 0.082 | |
| pred_ensembel | 12.758 | 0.084 | 11.589 | |
| var_imp | 33.606 | 0.555 | 34.162 | |