Mustafa Erhan Ozer
| Snapshot Date: 2025-03-17 13:00 -0400 (Mon, 17 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_20 |
| git_last_commit: 1f89469 |
| git_last_commit_date: 2024-10-29 11:20:46 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-03-20 12:07 -0400 (Thu, 20 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4756 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4487 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4514 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4441 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4406 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2097/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.6.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.6.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz |
| StartedAt: 2025-03-18 06:22:20 -0400 (Tue, 18 Mar 2025) |
| EndedAt: 2025-03-18 06:28:08 -0400 (Tue, 18 Mar 2025) |
| EllapsedTime: 347.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.3 (2025-02-28 ucrt) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 79949,10667,5160,9382,3065,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51441,5919,9479,79133,56919,3627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2310,4049,5468,23369,1182,2936
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,3990,64601,617,351,51611
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5372,10524,2587,3551,4547,1558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29947,84061,5826,189,55572,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 491,3980,83884,10128,91869,8813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51181,1636,54148,54915,51024,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,4160,5069,2170,9479,3710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,5631,200205,4137,728294,1056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 821,9575,5789,5250,3920,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9415,130589,1514,33,4843,4722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2878,6387,6720,2712,3638,811
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,2052,23516,6648,3692,4855
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2348,56997,4878,2646,4684,1906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4312,4729,51441,4159,7919,7030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5372,5122,64900,212,4312,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 941,3562,54567,3663,5837,6548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50507,5792,80070,1607,26517,2115
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23474,8431,3416,3779,2305,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91452,4988,3673,131669,4803,3717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4790,7035,3875,644974,7099,2169
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284184,11222,407006,1363,65993,5054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,84987,10642,9692,355,1371
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2101,5277,2064,6584,513,6774
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2946,81034,85479,3673,84274,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5967,4716,4968,112817,1027,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1490,55768,55967,285,5499,90480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 445,4128,51081,627,79144,7350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 166785,5830,83439,249,25915,7076
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4694,617,10643,5250,847,6554
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8942,100130015,51128,10841,54549,347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3122,1843,92483,407004,91949,4842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,79633,8799,26291,1203,6566
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5579,2169,1629,6897,26235,57620
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84342,517,79087,27235,10316,57761
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5195,8772,2119,1514,4668,23462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,5367,27235,284958,55630,9332
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8660,790955,55270,1889,81704,7347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1394,2590,2937,3486,200539,51478
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1019,64801,2203,283459,3157,479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3552,9056,80222,85479,5068,2990
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1182,999,10166,2109,391051,197131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10116,2235,1371,477,79053,1557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91869,55902,207,1582,152078,5105
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5599,10457,801,3033,2806,1392
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,3312,90480,1443,2034,7352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29947,255738,2203,10560,4760,2592
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8842,2113,7297,10316,7916,50506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,665,79144,7026,5515,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,79796,9607,570,7431,427
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6888,6774,200810,5970,27089,2919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91452,1499,116228,6009,9377,90480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3779,4925,199,210,4313,1232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285126,3423,409,5329,4843,9451
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,538,2271,1789,5590,54896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,5161,1606,1353,23062,3155
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,5091,7038,1175,205327,3931
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1678,2539,201305,51608,7480,4125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,57048,4714,64131,2786,3240
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5562,54982,5274,9692,150,10686
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10165,84300,5175,29960,6582,1890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1910,284184,5331,336,1270,8813
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,462,3073,5745,64805,11231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1582,653509,9091,11254,10165,85365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3992,3482,2908,2328,8604,6582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,6891,4502,4288,51601,4286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 63931,134,9759,2053,7409,6439
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5409,4548,2697,4889,4153,4232
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,406922,7076,51085,407009,3490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55005,1769,590,51117,3091,1244
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,4760,132,1890,3122,6772
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644096,6811,10020,79068,4886,2572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1717,4878,3101,3784,9415,9663
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100131801,4726,5444,6715,7295,2310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 847,133522,111,1859,1641,3174
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,8504,219,3117,3158,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5328,23590,3791,1514,26175,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6522,55699,496,2919,80339,130589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11222,6383,3482,81689,10724,4915
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79934,5367,10013,7347,7295,79144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5445,487,5787,344,339,821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28957,3728,1909,3356,10857,1019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 351,3308,5443,4852,23054,2776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406982,590,1593,211,347,2806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2166,5625,111240474,708,1737,3952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6550,8862,8743,2155,50506,2147
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 868,5467,6464,2752,125170,3482
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,1583,64805,51082,479,5830
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6392,2762,2305,1340,5139,79796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3958,4715,6199,3988,6948,210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9692,84833,821,6714,1716,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5213,487,2203,84557,406,25974
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2314,1186,338328,11035,4598,5054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,7428,3630,9021,265,50814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55572,5080,4015,1175,107075310,8504
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4709,5370,653509,2166,3784,51167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26175,4256,55902,11213,150379,27329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 540,256471,338821,1230,1345,55278
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 491,200205,1499,31,7841,391051
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81570,7450,1442,6649,6515,729238
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,2740,406922,8818,10102,9945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7100,6448,54704,285126,685,84061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,5467,55818,8504,7040,599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406913,5190,8854,64900,338,7018
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3373,9969,5601,728,153642,582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8879,64788,4712,4879,5590,29947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148738,509,80331,1589,1593,3033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1718,5551,6891,364,2334,51144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2878,64805,27344,23530,2328,1435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4338,51004,4942,51601,7412,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 686,9759,65080,7057,116931,28957
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4942,8651,80222,6648,8813,23417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5740,27232,58528,27089,64116,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23462,10157,407010,476,8604,2793
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
73.82 2.04 76.62
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.59 | 0.12 | 1.44 | |